![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
ClCG01G009320 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCAGCAGTCCAAAAGATTTACTCAAAGAAGTCGATGGGATTGGGAAGCTTCAAGCAGCGGGTCTAAACAAGGGCCACAACCTGTGCAGAAAAATTCACCTACAAATAATCAAGGAGCCTCCTCCAAAACAAAAATTGACACCCCACCTACCATTAGAACCGAACATAGACACAACAACAAAGAACTCCAACCCCTATGGCAAACCAACTCTCGAAAAATGCTTCATATGTGGTAAAAGTGGACATTTATCAAACAACTGTCCAAATAGAAGAACAATAGCATTGGCTGAGGAAGACACTTTAGCCCCAGAATCAAAAGAGGATTTGTTGGAAGAGGGCACTGATTTTTTGGAGCCGGACAAAGGGGACAACCTTTCTTGTGTTCTCCAAAGATTGTTGCTTGCTCCAAAAACTGATTCCCATCCTCAATGCCACTCATTGTTCAAAACATGATGCACTGTCAAGGGGAAACTCTTCAATATCATTATCGACAGTGGGAGCTCCGAAAATATGGTTTCTAAAAAAATAGTTCGTGCTTTGAATCTTATGGTTGAATCCCATCCCAACCCTTATAAGGTTGGCTGGACTAAGAAAGGAGGAGAAGCTCAAGTCACATAAATCTGCACAGTGGAATTCTCCATTGGCAACAACTACAAAGATCAAATTTTGTGTGACGTTTTGGATATGGATGCATGTCATATCCTTCTTGGCCGCCCTTGGCAATATGATTTGCAGGCTTATCACAAAGGGAGAGATAACACTTACGAATTCTCTAGGCATGGGAGAAAGATCGTCTTGTTGCCATTGTCTAAACTGAATCCATCAACTCCAAAGATACAAGGGGACAATTATTCAGCATCATCTCTGGAAAACAATTCTCCAAGGTGCATGATGAAACTATATGGGGATTGATTGTTAAAGGAGATGTCAAAACAGAAAATGAATCACATTTTCCAACAACAATTCAACACCTATTCACAGAATTCCCAAGCATTCTCAATTCCTCCACGAGTCTACCTCCCCTTCGAGACATAAAACATAAAATTGACCTCATTCTTGGATCCACACTTCCCCACCTTCCACATTACAAAATGAGCCCAAAAGAGTATCAAATCATACATGATCACGTCCAGGAACTTCTTGAGAAAGGGTGTATGCAACCAAGCATTAGTCCTTGTGTTGTACAAGCTCTTCTCACACCCAAAAAAGACGGCAGTTGGCACATGCGTGTAGACAGCAGGGCAATAAACTGAATAACAGTCAAATATAGGTTCCCCATCCCTCGGGTTGGTGATTTATTAGACCAACTTGGCGGTGCTACGCTTTTTTCAAAGCTAGACCTTCGAAGTGGGTATCACCAAATCAGAATAAGACCCGGGGATGAATGGAAGACTGCATTTAAGACAAATGAAGGGCTCTTTGAATGGCTTGTCATGCCATTCGGTCTCTCCAATGCCCCAAGCACCTTTATGCAGCTAATGAACAAGGTTTTTCTTCCCTCTCTTAACAAATTTGTAGTAATCTATTTTGATGACATCCTCATTTATAGCAATAATGTGGAGGATCATAAAACCCACCTACATAAAGTTTTTTCCACCCTAGCAAAAAAACAATGGGATATAAACATCAAAAAATGTGTCTTTTTAGTTGAAGAAATTGCCTTTTTAGGATTCATCATTGGAAATAATGAGATAAAAGTTGATCCCCGAAAGGTTGAGGCTATTGCCAATTGGCCTACACCCACATCCATGAAACAGATCCAATCATTTTTAGGTTTAGCATCTTTTTATAGGAAGTTCATCAAAAATTTCAGCACCATAGCATCTTCCCTTACAGACTGCCTTAAGAAAAACAATTACAAATTCTTGGAGTAAAATTCTCAATTCAATTCTATATTATGAGGGAAGGGGGAAGCCTATTATTTATAGGCAAAGGAAAATAGCTTAATTCCTAACTGCAGTTAGAATTTTACTAAATAAAACAGACAGCATTTAATTGTTTTGCTGACTGAAATAAAAACATAATAAACTATTAAAGCTATTTAATTGTTACATCGAAACTGCTTCAAAATGGTGAAATAAGCATGTGACATTGACAATTTTTAAATGGATTACTAACCAGTTCCATAGCATAATGGCAAAATGGCAGTTTATTACATCAAAGAAGCCACTCTATAATATGTACATACACTTGGTGGTCAATTTGTTACCTTAGAAAAGCCAGATACTTGGTCTGCATATTCCCACATAAGTTCTCCACAGCATCCTTTAAATCCATGAGTTCACAGCACAGTCTTCTAATTCCCTACACAGGCACCATTTTCTTATATCAAATCCAGAATGAACAAAAAGAAAAAGAAAAAAAATGCAAACTTAAAATTTAAAATACAGAGATACACAGTTCAAAGTCAAAGTAGTGTTTCAGTGGTTAGTTGTTGCCATGAACCTACCATCAACTGTCAAGGATTAAGTAACCAATAGCTCTAACCCTTATTCGTGTTGATTGAAGTCCTTTTAGGTTTATCTTTTATGTAACGATAGCATAGGGATTTTCGTTTTTAACTCCTTTTCTGTTGGAATTTTTTTCTCTTTTTTTTTTTTGGGTTTGTTCATCTTCTTTCGTGTTTCTCAAAGAAAGCTTGGTTTTTGGTTTGATTGTTTATTTTTTAAAAAAGTTGGACTTCGATGGAGAAATTGAATGAACTCTTGTATCCCCACTGTCTCCTATGCTGTGATCACAAATGAATAACTAAGGGGGAGGTTTAAAGTGTCTTTGACGCCATAGACAAGGGGATTTCCTTTCCATTTTCTATTGGATCTCATGGGATTTAGATAAAAAATCTCCAGTTTCTTTACGATATTCTATACTTTTAAGTTGTGGAAGAGAGGAAAATTCTTTTAACTTTCTTCGACCTCATATAAACCTTTGAGGCCAGTCTCTTGTCTTAAAAGTGACCTTGTGAAATCAGTGGTGGCAGGCATCAATCTCAGAAGACCATTTTTGGGTGGGTATTGGAGGAAGGGGTGAGCTTAAGAGACAGATAAGCTTTCCTCCTCCACATTAGTAGTGAGGTAATCGTCCGCTTCTAGCTCTTGTTGAGATTTACATTTATCCACCAGAAATTCTCTGCACCAAGCAGATCAGAAAAGGGAGACCAAAGGGAATTTCCTAATTCCAACATCAATGACGAATGCATCAACGGCTAA ATGAGCAGCAGTCCAAAAGATTTACTCAAAGAAGTCGATGGGATTGGGAAGCTTCAAGCAGCGGGTCTAAACAAGGGCCACAACCTGTGCAGAAAAATTCACCTACAAATAATCAAGGAGCCTCCTCCAAAACAAAAATTGACACCCCACCTACCATTAGAACCGAACATAGACACAACAACAAAGAACTCCAACCCCTATGGCAAACCAACTCTCGAAAAATGCTTCATATGTGGTAAAAGTGGACATTTATCAAACAACTGTCCAAATAGAAGAACAATAGCATTGGCTGAGGAAGACACTTTAGCCCCAGAATCAAAAGAGGATTTGTTGGAAGAGGGCACTGATTTTTTGGAGCCGGACAAAGGGGACAACCTTTCTTGTAGATACACAGTTCAAAGTCAAAGTAGTGTTTCAGTGAAATTCTCTGCACCAAGCAGATCAGAAAAGGGAGACCAAAGGGAATTTCCTAATTCCAACATCAATGACGAATGCATCAACGGCTAA ATGAGCAGCAGTCCAAAAGATTTACTCAAAGAAGTCGATGGGATTGGGAAGCTTCAAGCAGCGGGTCTAAACAAGGGCCACAACCTGTGCAGAAAAATTCACCTACAAATAATCAAGGAGCCTCCTCCAAAACAAAAATTGACACCCCACCTACCATTAGAACCGAACATAGACACAACAACAAAGAACTCCAACCCCTATGGCAAACCAACTCTCGAAAAATGCTTCATATGTGGTAAAAGTGGACATTTATCAAACAACTGTCCAAATAGAAGAACAATAGCATTGGCTGAGGAAGACACTTTAGCCCCAGAATCAAAAGAGGATTTGTTGGAAGAGGGCACTGATTTTTTGGAGCCGGACAAAGGGGACAACCTTTCTTGTAGATACACAGTTCAAAGTCAAAGTAGTGTTTCAGTGAAATTCTCTGCACCAAGCAGATCAGAAAAGGGAGACCAAAGGGAATTTCCTAATTCCAACATCAATGACGAATGCATCAACGGCTAA MSSSPKDLLKEVDGIGKLQAAGLNKGHNLCRKIHLQIIKEPPPKQKLTPHLPLEPNIDTTTKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEPDKGDNLSCRYTVQSQSSVSVKFSAPSRSEKGDQREFPNSNINDECING Homology
BLAST of ClCG01G009320 vs. NCBI nr
Match: KAA0040480.1 (hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa] >TYK23480.1 hypothetical protein E5676_scaffold278G00510 [Cucumis melo var. makuwa]) HSP 1 Score: 77.4 bits (189), Expect = 1.3e-10 Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 0
BLAST of ClCG01G009320 vs. NCBI nr
Match: KAA0059834.1 (uncharacterized protein E6C27_scaffold108G001170 [Cucumis melo var. makuwa]) HSP 1 Score: 76.3 bits (186), Expect = 2.9e-10 Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 0
BLAST of ClCG01G009320 vs. NCBI nr
Match: PON83156.1 (Zinc finger, CCHC-type [Trema orientale]) HSP 1 Score: 74.7 bits (182), Expect = 8.4e-10 Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of ClCG01G009320 vs. NCBI nr
Match: XP_031745523.1 (uncharacterized protein LOC116405899 [Cucumis sativus]) HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09 Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 0
BLAST of ClCG01G009320 vs. NCBI nr
Match: KAA0033794.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK22340.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match: A0A5D3DJB8 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00510 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11 Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 0
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match: A0A5A7UXS4 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G001170 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10 Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 0
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match: A0A2P5EC93 (Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_211300 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10 Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match: A0A5A7SRH4 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00580 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 7.0e-10 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match: A0A5A7T256 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003810 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 9.1e-10 Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|