ClCG01G009320 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G009320
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionZf-CCHC domain-containing protein
LocationCG_Chr01: 12819425 .. 12822633 (+)
RNA-Seq ExpressionClCG01G009320
SyntenyClCG01G009320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAGCAGTCCAAAAGATTTACTCAAAGAAGTCGATGGGATTGGGAAGCTTCAAGCAGCGGGTCTAAACAAGGGCCACAACCTGTGCAGAAAAATTCACCTACAAATAATCAAGGAGCCTCCTCCAAAACAAAAATTGACACCCCACCTACCATTAGAACCGAACATAGACACAACAACAAAGAACTCCAACCCCTATGGCAAACCAACTCTCGAAAAATGCTTCATATGTGGTAAAAGTGGACATTTATCAAACAACTGTCCAAATAGAAGAACAATAGCATTGGCTGAGGAAGACACTTTAGCCCCAGAATCAAAAGAGGATTTGTTGGAAGAGGGCACTGATTTTTTGGAGCCGGACAAAGGGGACAACCTTTCTTGTGTTCTCCAAAGATTGTTGCTTGCTCCAAAAACTGATTCCCATCCTCAATGCCACTCATTGTTCAAAACATGATGCACTGTCAAGGGGAAACTCTTCAATATCATTATCGACAGTGGGAGCTCCGAAAATATGGTTTCTAAAAAAATAGTTCGTGCTTTGAATCTTATGGTTGAATCCCATCCCAACCCTTATAAGGTTGGCTGGACTAAGAAAGGAGGAGAAGCTCAAGTCACATAAATCTGCACAGTGGAATTCTCCATTGGCAACAACTACAAAGATCAAATTTTGTGTGACGTTTTGGATATGGATGCATGTCATATCCTTCTTGGCCGCCCTTGGCAATATGATTTGCAGGCTTATCACAAAGGGAGAGATAACACTTACGAATTCTCTAGGCATGGGAGAAAGATCGTCTTGTTGCCATTGTCTAAACTGAATCCATCAACTCCAAAGATACAAGGGGACAATTATTCAGCATCATCTCTGGAAAACAATTCTCCAAGGTGCATGATGAAACTATATGGGGATTGATTGTTAAAGGAGATGTCAAAACAGAAAATGAATCACATTTTCCAACAACAATTCAACACCTATTCACAGAATTCCCAAGCATTCTCAATTCCTCCACGAGTCTACCTCCCCTTCGAGACATAAAACATAAAATTGACCTCATTCTTGGATCCACACTTCCCCACCTTCCACATTACAAAATGAGCCCAAAAGAGTATCAAATCATACATGATCACGTCCAGGAACTTCTTGAGAAAGGGTGTATGCAACCAAGCATTAGTCCTTGTGTTGTACAAGCTCTTCTCACACCCAAAAAAGACGGCAGTTGGCACATGCGTGTAGACAGCAGGGCAATAAACTGAATAACAGTCAAATATAGGTTCCCCATCCCTCGGGTTGGTGATTTATTAGACCAACTTGGCGGTGCTACGCTTTTTTCAAAGCTAGACCTTCGAAGTGGGTATCACCAAATCAGAATAAGACCCGGGGATGAATGGAAGACTGCATTTAAGACAAATGAAGGGCTCTTTGAATGGCTTGTCATGCCATTCGGTCTCTCCAATGCCCCAAGCACCTTTATGCAGCTAATGAACAAGGTTTTTCTTCCCTCTCTTAACAAATTTGTAGTAATCTATTTTGATGACATCCTCATTTATAGCAATAATGTGGAGGATCATAAAACCCACCTACATAAAGTTTTTTCCACCCTAGCAAAAAAACAATGGGATATAAACATCAAAAAATGTGTCTTTTTAGTTGAAGAAATTGCCTTTTTAGGATTCATCATTGGAAATAATGAGATAAAAGTTGATCCCCGAAAGGTTGAGGCTATTGCCAATTGGCCTACACCCACATCCATGAAACAGATCCAATCATTTTTAGGTTTAGCATCTTTTTATAGGAAGTTCATCAAAAATTTCAGCACCATAGCATCTTCCCTTACAGACTGCCTTAAGAAAAACAATTACAAATTCTTGGAGTAAAATTCTCAATTCAATTCTATATTATGAGGGAAGGGGGAAGCCTATTATTTATAGGCAAAGGAAAATAGCTTAATTCCTAACTGCAGTTAGAATTTTACTAAATAAAACAGACAGCATTTAATTGTTTTGCTGACTGAAATAAAAACATAATAAACTATTAAAGCTATTTAATTGTTACATCGAAACTGCTTCAAAATGGTGAAATAAGCATGTGACATTGACAATTTTTAAATGGATTACTAACCAGTTCCATAGCATAATGGCAAAATGGCAGTTTATTACATCAAAGAAGCCACTCTATAATATGTACATACACTTGGTGGTCAATTTGTTACCTTAGAAAAGCCAGATACTTGGTCTGCATATTCCCACATAAGTTCTCCACAGCATCCTTTAAATCCATGAGTTCACAGCACAGTCTTCTAATTCCCTACACAGGCACCATTTTCTTATATCAAATCCAGAATGAACAAAAAGAAAAAGAAAAAAAATGCAAACTTAAAATTTAAAATACAGAGATACACAGTTCAAAGTCAAAGTAGTGTTTCAGTGGTTAGTTGTTGCCATGAACCTACCATCAACTGTCAAGGATTAAGTAACCAATAGCTCTAACCCTTATTCGTGTTGATTGAAGTCCTTTTAGGTTTATCTTTTATGTAACGATAGCATAGGGATTTTCGTTTTTAACTCCTTTTCTGTTGGAATTTTTTTCTCTTTTTTTTTTTTGGGTTTGTTCATCTTCTTTCGTGTTTCTCAAAGAAAGCTTGGTTTTTGGTTTGATTGTTTATTTTTTAAAAAAGTTGGACTTCGATGGAGAAATTGAATGAACTCTTGTATCCCCACTGTCTCCTATGCTGTGATCACAAATGAATAACTAAGGGGGAGGTTTAAAGTGTCTTTGACGCCATAGACAAGGGGATTTCCTTTCCATTTTCTATTGGATCTCATGGGATTTAGATAAAAAATCTCCAGTTTCTTTACGATATTCTATACTTTTAAGTTGTGGAAGAGAGGAAAATTCTTTTAACTTTCTTCGACCTCATATAAACCTTTGAGGCCAGTCTCTTGTCTTAAAAGTGACCTTGTGAAATCAGTGGTGGCAGGCATCAATCTCAGAAGACCATTTTTGGGTGGGTATTGGAGGAAGGGGTGAGCTTAAGAGACAGATAAGCTTTCCTCCTCCACATTAGTAGTGAGGTAATCGTCCGCTTCTAGCTCTTGTTGAGATTTACATTTATCCACCAGAAATTCTCTGCACCAAGCAGATCAGAAAAGGGAGACCAAAGGGAATTTCCTAATTCCAACATCAATGACGAATGCATCAACGGCTAA

mRNA sequence

ATGAGCAGCAGTCCAAAAGATTTACTCAAAGAAGTCGATGGGATTGGGAAGCTTCAAGCAGCGGGTCTAAACAAGGGCCACAACCTGTGCAGAAAAATTCACCTACAAATAATCAAGGAGCCTCCTCCAAAACAAAAATTGACACCCCACCTACCATTAGAACCGAACATAGACACAACAACAAAGAACTCCAACCCCTATGGCAAACCAACTCTCGAAAAATGCTTCATATGTGGTAAAAGTGGACATTTATCAAACAACTGTCCAAATAGAAGAACAATAGCATTGGCTGAGGAAGACACTTTAGCCCCAGAATCAAAAGAGGATTTGTTGGAAGAGGGCACTGATTTTTTGGAGCCGGACAAAGGGGACAACCTTTCTTGTAGATACACAGTTCAAAGTCAAAGTAGTGTTTCAGTGAAATTCTCTGCACCAAGCAGATCAGAAAAGGGAGACCAAAGGGAATTTCCTAATTCCAACATCAATGACGAATGCATCAACGGCTAA

Coding sequence (CDS)

ATGAGCAGCAGTCCAAAAGATTTACTCAAAGAAGTCGATGGGATTGGGAAGCTTCAAGCAGCGGGTCTAAACAAGGGCCACAACCTGTGCAGAAAAATTCACCTACAAATAATCAAGGAGCCTCCTCCAAAACAAAAATTGACACCCCACCTACCATTAGAACCGAACATAGACACAACAACAAAGAACTCCAACCCCTATGGCAAACCAACTCTCGAAAAATGCTTCATATGTGGTAAAAGTGGACATTTATCAAACAACTGTCCAAATAGAAGAACAATAGCATTGGCTGAGGAAGACACTTTAGCCCCAGAATCAAAAGAGGATTTGTTGGAAGAGGGCACTGATTTTTTGGAGCCGGACAAAGGGGACAACCTTTCTTGTAGATACACAGTTCAAAGTCAAAGTAGTGTTTCAGTGAAATTCTCTGCACCAAGCAGATCAGAAAAGGGAGACCAAAGGGAATTTCCTAATTCCAACATCAATGACGAATGCATCAACGGCTAA

Protein sequence

MSSSPKDLLKEVDGIGKLQAAGLNKGHNLCRKIHLQIIKEPPPKQKLTPHLPLEPNIDTTTKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEPDKGDNLSCRYTVQSQSSVSVKFSAPSRSEKGDQREFPNSNINDECING
Homology
[Close]
BLAST of ClCG01G009320 vs. NCBI nr
Match: KAA0040480.1 (hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa] >TYK23480.1 hypothetical protein E5676_scaffold278G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-10
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 62  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEED--TLAPESKEDLLEEGTDFLE 121
           K+ N Y +P+L+KCF CG+SGHLSNNCP R+TIALA E+  +++ + KE+  +E   F+E
Sbjct: 231 KSQNTYTRPSLKKCFRCGQSGHLSNNCPQRKTIALAHEESNSISEDDKEE--DEEAKFIE 290

Query: 122 PDKGDNLSC 129
            D GD +SC
Sbjct: 291 ADDGDRISC 297

[Close]
BLAST of ClCG01G009320 vs. NCBI nr
Match: KAA0059834.1 (uncharacterized protein E6C27_scaffold108G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-10
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 62  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALA--EEDTLAPESKEDLLEEGTDFLE 121
           K+ N Y +P+LEKCF CG+SGHLSNNCP R TI+LA  E ++++ + KE+  EE  +F+E
Sbjct: 200 KSQNTYTRPSLEKCFRCGQSGHLSNNCPQRETISLADKESNSISEDDKEE--EEEAEFIE 259

Query: 122 PDKGDNLSCRYTVQ 134
            D GD +S  Y +Q
Sbjct: 260 ADDGDRIS--YVIQ 269

[Close]
BLAST of ClCG01G009320 vs. NCBI nr
Match: PON83156.1 (Zinc finger, CCHC-type [Trema orientale])

HSP 1 Score: 74.7 bits (182), Expect = 8.4e-10
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 56  NIDTTTKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPES-KEDLLEEG 115
           N  +   NS+PY +P L KCF C + GHLSNNCPNRR+I L +ED    E   E+ + EG
Sbjct: 105 NQQSNRTNSDPYARPNLGKCFRCNQPGHLSNNCPNRRSIKLVDEDGGEDEQVLEEDIYEG 164

Query: 116 TDFLEPDKGDNLSC 129
            +F E D+G+ ++C
Sbjct: 165 AEFAEGDEGEEVAC 178

[Close]
BLAST of ClCG01G009320 vs. NCBI nr
Match: XP_031745523.1 (uncharacterized protein LOC116405899 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 0 

Query: 61  TKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEP 120
           +KN N Y +P+L KCF CG+ GHLSN+CP R+TIALAEE+   P   E    E T+ +E 
Sbjct: 226 SKNQNNYTRPSLGKCFRCGQPGHLSNSCPQRKTIALAEEEGNLPGEDESEPREETEEIEV 285

Query: 121 DKGDN---LSCRYTV 133
           D+GD    LS +Y++
Sbjct: 286 DEGDKSPVLSIKYSL 300

[Close]
BLAST of ClCG01G009320 vs. NCBI nr
Match: KAA0033794.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK22340.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 62  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEPD 121
           K+ N Y  P+L KCF CG+S HLSNNCP R+TIAL +E++ +    +   EE  +F+E D
Sbjct: 60  KSQNTYTHPSLGKCFRCGQSSHLSNNCPQRKTIALIDEESNSISEDDKKEEEEAEFIEVD 119

Query: 122 KGDNLSC 129
            GD +SC
Sbjct: 120 DGDRISC 126

[Close]
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match: A0A5D3DJB8 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00510 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 62  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEED--TLAPESKEDLLEEGTDFLE 121
           K+ N Y +P+L+KCF CG+SGHLSNNCP R+TIALA E+  +++ + KE+  +E   F+E
Sbjct: 231 KSQNTYTRPSLKKCFRCGQSGHLSNNCPQRKTIALAHEESNSISEDDKEE--DEEAKFIE 290

Query: 122 PDKGDNLSC 129
            D GD +SC
Sbjct: 291 ADDGDRISC 297

[Close]
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match: A0A5A7UXS4 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G001170 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 62  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALA--EEDTLAPESKEDLLEEGTDFLE 121
           K+ N Y +P+LEKCF CG+SGHLSNNCP R TI+LA  E ++++ + KE+  EE  +F+E
Sbjct: 200 KSQNTYTRPSLEKCFRCGQSGHLSNNCPQRETISLADKESNSISEDDKEE--EEEAEFIE 259

Query: 122 PDKGDNLSCRYTVQ 134
            D GD +S  Y +Q
Sbjct: 260 ADDGDRIS--YVIQ 269

[Close]
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match: A0A2P5EC93 (Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_211300 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 56  NIDTTTKNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPES-KEDLLEEG 115
           N  +   NS+PY +P L KCF C + GHLSNNCPNRR+I L +ED    E   E+ + EG
Sbjct: 105 NQQSNRTNSDPYARPNLGKCFRCNQPGHLSNNCPNRRSIKLVDEDGGEDEQVLEEDIYEG 164

Query: 116 TDFLEPDKGDNLSC 129
            +F E D+G+ ++C
Sbjct: 165 AEFAEGDEGEEVAC 178

[Close]
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match: A0A5A7SRH4 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00580 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.0e-10
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 62  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAEEDTLAPESKEDLLEEGTDFLEPD 121
           K+ N Y  P+L KCF CG+S HLSNNCP R+TIAL +E++ +    +   EE  +F+E D
Sbjct: 60  KSQNTYTHPSLGKCFRCGQSSHLSNNCPQRKTIALIDEESNSISEDDKKEEEEAEFIEVD 119

Query: 122 KGDNLSC 129
            GD +SC
Sbjct: 120 DGDRISC 126

[Close]
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match: A0A5A7T256 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003810 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.1e-10
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 62  KNSNPYGKPTLEKCFICGKSGHLSNNCPNRRTIALAE-EDTLAPESKEDLLEEGTDFLEP 121
           K  N Y +P+L KCF CG+ GHLSNNC  R+TIALAE EDT    +  +  EE T+ +E 
Sbjct: 137 KTQNNYTRPSLGKCFRCGEPGHLSNNCSQRKTIALAEDEDTYMSGTDREEEEEETELIEA 196

Query: 122 DKGDNLSC 129
           D GD +SC
Sbjct: 197 DDGDRISC 204

The following BLAST results are available for this feature:
BLAST of ClCG01G009320 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040480.11.3e-1052.17hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa] >TYK2348... [more]
KAA0059834.12.9e-1051.35uncharacterized protein E6C27_scaffold108G001170 [Cucumis melo var. makuwa][more]
PON83156.18.4e-1047.30Zinc finger, CCHC-type [Trema orientale][more]
XP_031745523.11.1e-0949.33uncharacterized protein LOC116405899 [Cucumis sativus][more]
KAA0033794.11.4e-0949.25zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK22340.1 zf-CCHC... [more]
BLAST of ClCG01G009320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DJB86.3e-1152.17CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7UXS41.4e-1051.35CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A2P5EC934.1e-1047.30Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_211300 PE=4 SV=... [more]
A0A5A7SRH47.0e-1049.25Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7T2569.1e-1052.94Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28... [more]
BLAST of ClCG01G009320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 74..90
e-value: 9.0E-5
score: 31.9
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 74..90
e-value: 7.8E-6
score: 25.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 74..90
score: 10.410928
NoneNo IPR availableGENE3D4.10.60.10coord: 65..94
e-value: 3.5E-7
score: 31.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..123
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 64..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G009320.1ClCG01G009320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding