ClCG01G007970 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G007970
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 9121664 .. 9122229 (-)
RNA-Seq ExpressionClCG01G007970
SyntenyClCG01G007970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAAATCGCAACCACTCGCCTCGAAACCATCACGTCTTCTCCGGTTTTGATGTGCTTTACGGTTACGCCATCGGATGGAAGAATCGACTGTAGTTTCTTCCTCCAGGTTTCATCGTTGTTGAAATGTCCGTTCTCTAGGGCGTTCTTCAGCGATTTCTCGGAAATTTTGAGGTGATCGATGAGTTCTGAATCGGAGTAGTGGAAAAGAAGATCGTCATGAATCAGTGACTGCCGAGGGACGATACAGAACAAATGAATCAATCTCTCCGCCGCTTCACCGACATGGCCACGAACAACATCACGGCCGGTGGAAGGATCAAAAATGGCGAGATTGACATAGGAATTGGAATAAGCCGAGTGGAATAGGCCGCACAAACAAACCGGTTCTTGCGCTTTCCAGATTTTGAGAATACGGTAGATATCAACGAGATGATCGAGGAAGGTGCCGTGCTTGTGCCAGCACTCTCCGGCGCCGACGGATCGGAGAACGGAGATAAGAGATGGAAGGTTCGCGTTTACCTTTTCAAGATCGCCGCGGAGGAAGGGACGAACAGACGCTAG

mRNA sequence

ATGAGGAAAATCGCAACCACTCGCCTCGAAACCATCACGTCTTCTCCGGTTTTGATGTGCTTTACGGTTACGCCATCGGATGGAAGAATCGACTGTAGTTTCTTCCTCCAGGTTTCATCGTTGTTGAAATGTCCGTTCTCTAGGGCGTTCTTCAGCGATTTCTCGGAAATTTTGAGGGACGATACAGAACAAATGAATCAATCTCTCCGCCGCTTCACCGACATGGCCACGAACAACATCACGGCCGGTGGAAGGATCAAAAATGGCGAGATTGACATAGGAATTGGAATAAGCCGAGCCGCACAAACAAACCGGTTCTTGCGCTTTCCAGATTTTGAGAATACGGTAGATATCAACGAGATGATCGAGGAAGGTGCCGTGCTTGTGCCAGCACTCTCCGGCGCCGACGGATCGGAGAACGGAGATAAGAGATGGAAGGTTCGCGTTTACCTTTTCAAGATCGCCGCGGAGGAAGGGACGAACAGACGCTAG

Coding sequence (CDS)

ATGAGGAAAATCGCAACCACTCGCCTCGAAACCATCACGTCTTCTCCGGTTTTGATGTGCTTTACGGTTACGCCATCGGATGGAAGAATCGACTGTAGTTTCTTCCTCCAGGTTTCATCGTTGTTGAAATGTCCGTTCTCTAGGGCGTTCTTCAGCGATTTCTCGGAAATTTTGAGGGACGATACAGAACAAATGAATCAATCTCTCCGCCGCTTCACCGACATGGCCACGAACAACATCACGGCCGGTGGAAGGATCAAAAATGGCGAGATTGACATAGGAATTGGAATAAGCCGAGCCGCACAAACAAACCGGTTCTTGCGCTTTCCAGATTTTGAGAATACGGTAGATATCAACGAGATGATCGAGGAAGGTGCCGTGCTTGTGCCAGCACTCTCCGGCGCCGACGGATCGGAGAACGGAGATAAGAGATGGAAGGTTCGCGTTTACCTTTTCAAGATCGCCGCGGAGGAAGGGACGAACAGACGCTAG

Protein sequence

MRKIATTRLETITSSPVLMCFTVTPSDGRIDCSFFLQVSSLLKCPFSRAFFSDFSEILRDDTEQMNQSLRRFTDMATNNITAGGRIKNGEIDIGIGISRAAQTNRFLRFPDFENTVDINEMIEEGAVLVPALSGADGSENGDKRWKVRVYLFKIAAEEGTNRR
Homology
BLAST of ClCG01G007970 vs. NCBI nr
Match: PON68152.1 (hypothetical protein PanWU01x14_097120, partial [Parasponia andersonii])

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-12
Identity = 39/81 (48.15%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 59  RDDTEQMNQSLRRFTDMATNNITAGGRIKNGEIDIGIGISR---AAQTNRFLRFPDFENT 118
           RD+TEQ++Q L  FTD++ N++  GG ++NGE+DIG+ + R   A + NR L  P  E++
Sbjct: 24  RDNTEQVDQPLGGFTDVSRNDVAPGGGVENGEVDIGVDVGRVEEAKKANRVLGSPWLEDS 83

Query: 119 VDINEMIEEGAVLVPALSGAD 137
           VD+ E++EEG V VPAL+GA+
Sbjct: 84  VDVEEVVEEGTVPVPALAGAN 104

BLAST of ClCG01G007970 vs. NCBI nr
Match: KAG9441996.1 (hypothetical protein H6P81_017850 [Aristolochia fimbriata])

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-08
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 0

Query: 60  DDTEQMNQSLRRFTDMATNNITA-GGRIKNGEIDIGI---GISRAAQTNRFLRFPDFENT 119
           DD E++ + L    D+  + + A GG +++GE+D+G+   G+  AA+ +     P  E+T
Sbjct: 181 DDAEEVGEVLGVGADVPADGVAAGGGGVEDGEVDVGVGVGGVEEAAEGDGVGGAPQLEDT 240

Query: 120 VDINEMIEEGAVLVPALSGADGSENGDKRWKVRVYLF 153
           VD  E++EE AVLV ALSGA  +E+ ++  + RV LF
Sbjct: 241 VDAKEVVEEAAVLVGALSGAQRTEDSNQGRETRVRLF 277

BLAST of ClCG01G007970 vs. NCBI nr
Match: OAY75206.1 (hypothetical protein ACMD2_06425 [Ananas comosus])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-07
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 0

Query: 57  ILRDDTEQMNQSLRRFTDMATNNITAGGRIKNGEIDIGIGIS---RAAQTNRFLRFPDFE 116
           + RDD E+++++L    D   +   AG  +++GE+D+G+G+     AA  +     P+ E
Sbjct: 336 VARDDAEEVDEALGCGADERGDAGAAGAGVEDGEVDVGVGVGGVVEAAAGDGVGGAPERE 395

Query: 117 NTVDINEMIEEGAVLVPALSGADGSENGDKRWKVRVYLFKIAAEEGTNR 163
           + V  +E+ EEGAVLV AL G    E+G +R + RV+  ++A +EG  R
Sbjct: 396 DAVHADEVGEEGAVLVVALPGPRRPEHGHQRGERRVHELELAPQEGARR 444

BLAST of ClCG01G007970 vs. NCBI nr
Match: CBI35362.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-06
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 4  IATTRLETITSSPVLMCFTVTPSDGRIDCSFFLQVSSLLKCPFSRAFFSDFSEILRDDTE 63
          +ATT L+T TSSPVLMCFTVTPS G  + +FFLQ SS L  P S AF ++ SE LR  T 
Sbjct: 1  MATTLLDTNTSSPVLMCFTVTPSGGTREFTFFLQASSPLTTPPSLAFLTETSEALRCSTS 60

Query: 64 QMNQSLRR 72
            + SL R
Sbjct: 61 --SSSLHR 66

BLAST of ClCG01G007970 vs. ExPASy TrEMBL
Match: A0A2P5D4C4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_097120 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 39/81 (48.15%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 59  RDDTEQMNQSLRRFTDMATNNITAGGRIKNGEIDIGIGISR---AAQTNRFLRFPDFENT 118
           RD+TEQ++Q L  FTD++ N++  GG ++NGE+DIG+ + R   A + NR L  P  E++
Sbjct: 24  RDNTEQVDQPLGGFTDVSRNDVAPGGGVENGEVDIGVDVGRVEEAKKANRVLGSPWLEDS 83

Query: 119 VDINEMIEEGAVLVPALSGAD 137
           VD+ E++EEG V VPAL+GA+
Sbjct: 84  VDVEEVVEEGTVPVPALAGAN 104

BLAST of ClCG01G007970 vs. ExPASy TrEMBL
Match: A0A0E0GF92 (Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.2e-12
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 0

Query: 57  ILRDDTEQMNQSLRRFTDMATNNITAGGRIKNGEIDIGIGIS---RAAQTNRFLRFPDFE 116
           + RDD E+++++L    D   + + A    ++GE+D+G+G+     AA  +     P+ E
Sbjct: 212 VARDDAEEVDEALGGGADDGAHVVAADVGFEDGEVDVGVGVGGVVEAAARDGVGGAPEAE 271

Query: 117 NTVDINEMIEEGAVLVPALSGADGSENGDKRWKVRVYLFKIAAEEGTNR 163
           + VD+ E+ EEGAVLVPAL+GA G+++G +  + RV+L  +AA+EG  R
Sbjct: 272 DAVDVEEVGEEGAVLVPALAGAGGAQHGGQLGERRVHLLLLAAQEGARR 320

BLAST of ClCG01G007970 vs. ExPASy TrEMBL
Match: A0A0E0CTF6 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-11
Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 0

Query: 57  ILRDDTEQMNQSLRRFTDMATNNITAGGRIKNGEIDIGIGIS---RAAQTNRFLRFPDFE 116
           + RDD E+++++L    D   + + A    ++GE+D+G+G+     AA  +     P+ E
Sbjct: 64  VARDDAEEVDEALGGGADDGAHVVAADVGFEDGEVDVGVGVGGVVEAAARHGVGGAPEAE 123

Query: 117 NTVDINEMIEEGAVLVPALSGADGSENGDKRWKVRVYLFKIAAEEGTNR 163
           + VD+ E+ EEGAVLVPAL+GA G ++G +  + RV+L  + A+EG  R
Sbjct: 124 DAVDVEEVGEEGAVLVPALAGAGGPQHGGQLGERRVHLLLLTAQEGARR 172

BLAST of ClCG01G007970 vs. ExPASy TrEMBL
Match: A0A199VEA5 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_06425 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-08
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 0

Query: 57  ILRDDTEQMNQSLRRFTDMATNNITAGGRIKNGEIDIGIGIS---RAAQTNRFLRFPDFE 116
           + RDD E+++++L    D   +   AG  +++GE+D+G+G+     AA  +     P+ E
Sbjct: 336 VARDDAEEVDEALGCGADERGDAGAAGAGVEDGEVDVGVGVGGVVEAAAGDGVGGAPERE 395

Query: 117 NTVDINEMIEEGAVLVPALSGADGSENGDKRWKVRVYLFKIAAEEGTNR 163
           + V  +E+ EEGAVLV AL G    E+G +R + RV+  ++A +EG  R
Sbjct: 396 DAVHADEVGEEGAVLVVALPGPRRPEHGHQRGERRVHELELAPQEGARR 444

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON68152.13.0e-1248.15hypothetical protein PanWU01x14_097120, partial [Parasponia andersonii][more]
KAG9441996.17.7e-0838.14hypothetical protein H6P81_017850 [Aristolochia fimbriata][more]
OAY75206.11.3e-0734.86hypothetical protein ACMD2_06425 [Ananas comosus][more]
CBI35362.31.9e-0657.35unnamed protein product, partial [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5D4C41.5e-1248.15Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A0E0GF927.2e-1237.61Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1[more]
A0A0E0CTF63.6e-1136.70Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
A0A199VEA56.3e-0834.86Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_06425 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G007970.1ClCG01G007970.1mRNA