ClCG01G006330 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G006330
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic
Location	CG_Chr01: 7064854 .. 7067321 (+)
RNA-Seq Expression	ClCG01G006330
Synteny	ClCG01G006330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCCTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATGTCTCTCTCTCTCTCTCTCATTCTCTGCTTTTCTCTCTCTACTTTCTCTCTCTAAACATTCTTTTTCCTCTGTTTTTGGGTGTAGTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTAAGCAAGTTTCCTCCTTTTTATTTTCATCCATTGTTTTCTCATTCTAAACTACTTCTAATTAATAAAACCTTGCTTTAATATTATTCATTAGTTATGTTTTATAATTCCAGTTATAATGCATTTTCCCCTATAAACTTTGTTTTTCAAGTTTTAGTTTTAGGTAACAATTTAGTTTGTTTTAGTTTTTAATTTGAAAATTTTCTTTCAAATTAGGTGTTACAAATTTCAGTAATATATTTTTCTTAATAACAACGATTAAATTGTTATTTATTTAAGTTTAAACTAATTAAATTGTTACAAATTTGAAAGTATTTTATCGTTAGAATTTTATATATTTCTTCCCTTTTTGATTTGTTGAATTTTGAAAATGGTAACAATCAAAACCTTTAAGTTAATGATTGTATTTATTTAATCATTTTAACTAAGTCAAGTTGGACCAAGAATGTTGGTCATGTTTCTTTTAGAATTTGCAAGACCAAGAATGTTGGTCATGTTTCTTTTAGAATTTGCAATCGCTTGTGTAAATTTGTCGTTCACCCTCTGATATGGGTTCTAATTTTTGTTTCTCAAATTTTTTCTAATCATGCGAAAGGTAGGGCGCGTAGGATGTATATTGAAAGGCTGATTATTCTAGTTGGGCGTCCTCTAAACTTGTTAGTTGTTTTTTTAATGAAGTTATTTTAAATAAAATATTGGAAATTCACTGGTTCAAACATTTGTAACATTCTTATAATTTGTGAAGAATTGTACGTTAAAATTGAAGAGGTTAAAGTGAAAATTTGGTTAGTTAACTATTGGATTTGAAATAACAGGTTGGGGAGCCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTGTAAGAATATAGTTAAATTTTGCCAGATTCTTTCTCTAAAGTTACGAAGGAACGAATTAAGTTGATTTCAAAAGGGAGTATTTTATTTTATGGCAGCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGTAAGGACTTGGATTTTGATACTGTTAAAATCATTTTTGTCATGTTCTAAATCACTCTTAAACATGTGGTTAAAGTCTACAATCAAAACATTATATATATTGTTAATACCTAGATTTGGTATCAATGGTGAATTTGAAATATTAGGGAGAGAATGGAATGGGTGTCTTGCAATACAAAAAGATCTAACACTTGTGTGGTGTTTAGCCACTAACACTTCGATGATAATTAAGTCAGTGACATTATTTCTAGATAGCTAAGAGAGTAGAGAGAGTTCGAAGTATATTTTAAATTTTTTTAGTATACTTTGAAATGTATAACATGCTCTCTTACCATTATTGAGAAATATTGTTTCATAATAGTTGTTAATCACTAATTAGCTTCTCAGACTATTAATTAAACTGCTACTAACCATTATATGACAAGTTAGTCTAGATAATCTTATTTGAAAATCTAAGTACACACAACTGACTCAAGGAATAAACACTTATACTTAATTAATTTTCTCTTTCATGACCAACTCTATTGGTCAGCCTCCACAAGGGCTCACAGGAAGAAGTTTCAGGGGTTGGCCATCTCCTCTTTCACAATTGACCAATAGACGTGTGGGCCATCGTGGCCCGACCTTATGGGTTGGGCCACACTATCTCTAGGGTCGATCTTCCCTTATGGTCGACCTTATACATTGGCCGATTTGTCCATCAAAGTTGGCCTCTCTTAGTTATAACTCTTCCCTTCTGATGGTCACTGTTAGAGTGACCTACTTAGCTTGATTTTTAACTTGTATATTGATTTTGAATGATTAAAAATATGTTTACAAGTGATTTGTTTCGGACATACTGTGAATCATACATAAATGTTAAAAGTTGTTAGTTGAATTTTGCAGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCGCGAGATCCATCGATGAAGTATCCATGGTCGACGCCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

mRNA sequence

ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCCTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTTGGGGAGCCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCGCGAGATCCATCGATGAAGTATCCATGGTCGACGCCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

Coding sequence (CDS)

ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCCTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTTGGGGAGCCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCGCGAGATCCATCGATGAAGTATCCATGGTCGACGCCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

Protein sequence

MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

Homology

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BLAST of ClCG01G006330 vs. NCBI nr
Match: XP_038875378.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Benincasa hispida])

HSP 1 Score: 377.9 bits (969), Expect = 5.4e-101
Identity = 181/195 (92.82%), Postives = 188/195 (96.41%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNS   NFE+VGSI+EDP+ YL
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSKLKNFEVVGSIKEDPVGYL 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
           HQ KTSLALQLAA+LATVGE ANAVTG+NNHEVPLTWIL QLGIVGFFYFL+FPPIIMNW
Sbjct: 61  HQKKTSLALQLAAILATVGEAANAVTGENNHEVPLTWILAQLGIVGFFYFLVFPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN
Sbjct: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKN 180

Query: 181 AYLKYPFAKPEDYDW 196
           AYLKYPFAKPEDYDW
Sbjct: 181 AYLKYPFAKPEDYDW 195

[Close]

BLAST of ClCG01G006330 vs. NCBI nr
Match: KAA0046329.1 (NAD(P)H-quinone oxidoreductase subunit L [Cucumis melo var. makuwa] >TYK30492.1 NAD(P)H-quinone oxidoreductase subunit L [Cucumis melo var. makuwa])

HSP 1 Score: 355.5 bits (911), Expect = 2.9e-94
Identity = 175/196 (89.29%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 3   CSLG-LHIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIR-EDPIAY 62
           C +G LHIPKALPSLSSSKTLFPSLSS FKLHNLN LPSNSNP NFEIVGSI+ EDPI Y
Sbjct: 4   CGIGLLHIPKALPSLSSSKTLFPSLSSPFKLHNLNILPSNSNPKNFEIVGSIKEEDPIGY 63

Query: 63  LHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           L + KTSLALQLAA LATVGEPA+AVTGDNNHEVPLTW+L QLG VGFFYFL+FPPIIMN
Sbjct: 64  LDKKKTSLALQLAAFLATVGEPASAVTGDNNHEVPLTWVLAQLGFVGFFYFLVFPPIIMN 123

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMY+QFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PSQIK
Sbjct: 124 WLRIRWYRRNLLEMYIQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSQIK 183

Query: 183 NAYLKYPFAKPEDYDW 196
           NAYLKYPFAKPEDYDW
Sbjct: 184 NAYLKYPFAKPEDYDW 199

[Close]

BLAST of ClCG01G006330 vs. NCBI nr
Match: XP_004150114.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 4.1e-93
Identity = 171/196 (87.24%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 3   CSLG-LHIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIR-EDPIAY 62
           CS+G LHIPKALPSLSSSKTLFPSL S FKLHN N LPSNSNP NF+IVGSI+ EDPI Y
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           LH+ KTSLAL LAA LATVGEPA+AVTG+NNHEVPLTW+L QLG++GFFYFL+FPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

Query: 183 NAYLKYPFAKPEDYDW 196
           NAYLKYPFAKPEDYDW
Sbjct: 186 NAYLKYPFAKPEDYDW 201

[Close]

BLAST of ClCG01G006330 vs. NCBI nr
Match: KAE8648604.1 (hypothetical protein Csa_008632 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 7.8e-92
Identity = 170/195 (87.18%), Postives = 183/195 (93.85%), Query Frame = 0


Query: 3   CSLG-LHIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIR-EDPIAY 62
           CS+G LHIPKALPSLSSSKTLFPSL S FKLHN N LPSNSNP NF+IVGSI+ EDPI Y
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           LH+ KTSLAL LAA LATVGEPA+AVTG+NNHEVPLTW+L QLG++GFFYFL+FPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

Query: 183 NAYLKYPFAKPEDYD 195
           NAYLKYPFAKPEDYD
Sbjct: 186 NAYLKYPFAKPEDYD 200

[Close]

BLAST of ClCG01G006330 vs. NCBI nr
Match: XP_023527074.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.9 bits (873), Expect = 7.3e-90
Identity = 167/195 (85.64%), Postives = 176/195 (90.26%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           MNCSLGLHIPKALPSLSSSKT+ P LS+ FKL  L LPS     NF++V SIREDPIA+L
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKL--LKLPSKPTSINFQVVASIREDPIAFL 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
            Q KTSL+LQ AALLATV EPA AVTGDNNHEVPLTWILTQLGIVGFFYFL+FPPIIMNW
Sbjct: 61  RQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN
Sbjct: 121 LRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKN 180

Query: 181 AYLKYPFAKPEDYDW 196
            YLKYPFAKPEDYDW
Sbjct: 181 GYLKYPFAKPEDYDW 193

[Close]

BLAST of ClCG01G006330 vs. ExPASy Swiss-Prot
Match: Q9CAC5 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhL PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-50
Identity = 105/191 (54.97%), Postives = 131/191 (68.59%), Query Frame = 0


Query: 4   SLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQH 63
           SLGL+ P ALPSLS       S+ S F + +   P+++  +N   V  +R      L   
Sbjct: 6   SLGLYAPNALPSLSLKPR---SVKSPFCITSHTKPNDTLLHN---VNKMRAKACDILGAK 65

Query: 64  KTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRI 123
           KT LA QL A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFL+ PPIIMNWLR+
Sbjct: 66  KTILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 125

Query: 124 RWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYL 183
           RWYRR   EMYLQFM VF+FFPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YL
Sbjct: 126 RWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYL 185

Query: 184 KYPFAKPEDYD 195
           KYP+A PEDYD
Sbjct: 186 KYPYATPEDYD 189

[Close]

BLAST of ClCG01G006330 vs. ExPASy Swiss-Prot
Match: Q7U620 (NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) OX=84588 GN=ndhL PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 98  ILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 157
           ++    ++G  Y L+ P  +  W+  RW R   +E  L +  VFLFFPG++++APFLNFR
Sbjct: 17  VILAYALLGGLYLLVVPLALFFWMNSRWTRMGKIERLLVYGLVFLFFPGMVVFAPFLNFR 76

[Close]

BLAST of ClCG01G006330 vs. ExPASy Swiss-Prot
Match: Q10W93 (NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=ndhL PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-05
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 109 YFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 158
           YFL+ P I+  +L+ RWY  + +E    +  +FLFFPG+L+ +PFLNFR
Sbjct: 22  YFLVMPAIVYAYLKTRWYVVSSIERVFMYFLMFLFFPGMLVLSPFLNFR 70

[Close]

BLAST of ClCG01G006330 vs. ExPASy Swiss-Prot
Match: Q8DKZ3 (NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=ndhL PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.6e-05
Identity = 26/64 (40.62%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 98  ILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 157
           +L   G +   Y L+ P I+  +L  RWY  +  E    +  V  FFPG+LL APF+NFR
Sbjct: 9   VLGVYGALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFR 68

Query: 158 KFPR 162
             PR
Sbjct: 69  PQPR 72

[Close]

BLAST of ClCG01G006330 vs. ExPASy Swiss-Prot
Match: B0C6G0 (NAD(P)H-quinone oxidoreductase subunit L OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=ndhL PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.4e-05
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 98  ILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 157
           ++  LG++G  Y L+ P I   +L+ RWY  + LE    +  VF FFP +LL +PFLNFR
Sbjct: 5   LILLLGLLG-GYLLVMPAITYFYLQKRWYVASSLERGFMYFLVFFFFPSLLLLSPFLNFR 64

Query: 158 KFPR 162
             PR
Sbjct: 65  PQPR 67

[Close]

BLAST of ClCG01G006330 vs. ExPASy TrEMBL
Match: A0A5D3E3M5 (NAD(P)H-quinone oxidoreductase subunit L OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00350 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 175/196 (89.29%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 3   CSLG-LHIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIR-EDPIAY 62
           C +G LHIPKALPSLSSSKTLFPSLSS FKLHNLN LPSNSNP NFEIVGSI+ EDPI Y
Sbjct: 4   CGIGLLHIPKALPSLSSSKTLFPSLSSPFKLHNLNILPSNSNPKNFEIVGSIKEEDPIGY 63

Query: 63  LHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           L + KTSLALQLAA LATVGEPA+AVTGDNNHEVPLTW+L QLG VGFFYFL+FPPIIMN
Sbjct: 64  LDKKKTSLALQLAAFLATVGEPASAVTGDNNHEVPLTWVLAQLGFVGFFYFLVFPPIIMN 123

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMY+QFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PSQIK
Sbjct: 124 WLRIRWYRRNLLEMYIQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSQIK 183

Query: 183 NAYLKYPFAKPEDYDW 196
           NAYLKYPFAKPEDYDW
Sbjct: 184 NAYLKYPFAKPEDYDW 199

[Close]

BLAST of ClCG01G006330 vs. ExPASy TrEMBL
Match: A0A0A0KSV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G569340 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.0e-93
Identity = 171/196 (87.24%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 3   CSLG-LHIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIR-EDPIAY 62
           CS+G LHIPKALPSLSSSKTLFPSL S FKLHN N LPSNSNP NF+IVGSI+ EDPI Y
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           LH+ KTSLAL LAA LATVGEPA+AVTG+NNHEVPLTW+L QLG++GFFYFL+FPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

Query: 183 NAYLKYPFAKPEDYDW 196
           NAYLKYPFAKPEDYDW
Sbjct: 186 NAYLKYPFAKPEDYDW 201

[Close]

BLAST of ClCG01G006330 vs. ExPASy TrEMBL
Match: A0A6J1GNR4 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.0e-89
Identity = 165/195 (84.62%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           MNCSLGLHIPKALPSLSSSKT+ P LS+ FKL  L LPSN    +F++V  IREDPI +L
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKL--LKLPSNPTSISFQVVACIREDPIGFL 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
            Q KTSL+LQ AALLATV EPA AVTGDNNHEVPLTWILTQLGIVGFFYFL+FPPIIMNW
Sbjct: 61  RQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN
Sbjct: 121 LRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKN 180

Query: 181 AYLKYPFAKPEDYDW 196
            YLKYPFAKPEDYDW
Sbjct: 181 GYLKYPFAKPEDYDW 193

[Close]

BLAST of ClCG01G006330 vs. ExPASy TrEMBL
Match: A0A6J1GQ77 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.3e-88
Identity = 165/195 (84.62%), Postives = 174/195 (89.23%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           MNCSLGLHIPKALPSLSSSKT+ P LS+ FKL  L LP  SNP +  +V  IREDPI +L
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKL--LKLP--SNPTSISVVACIREDPIGFL 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
            Q KTSL+LQ AALLATV EPA AVTGDNNHEVPLTWILTQLGIVGFFYFL+FPPIIMNW
Sbjct: 61  RQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN
Sbjct: 121 LRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKN 180

Query: 181 AYLKYPFAKPEDYDW 196
            YLKYPFAKPEDYDW
Sbjct: 181 GYLKYPFAKPEDYDW 191

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BLAST of ClCG01G006330 vs. ExPASy TrEMBL
Match: A0A6J1DYB3 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025670 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.3e-87
Identity = 163/197 (82.74%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MNC--SLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIA 60
           M C   LGLHIP+ALPSLSSS++LFPSLSS  KL    LPSNS PNN   V SI EDPIA
Sbjct: 3   MRCCLGLGLHIPRALPSLSSSQSLFPSLSSISKLQ--KLPSNSTPNNKNAVASISEDPIA 62

Query: 61  YLHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIM 120
            +HQ K SLA Q+AALLAT+GEPANAVTGDNNHEVPL+WILTQLGIVGFFYFL+FPPIIM
Sbjct: 63  NVHQKKPSLAFQVAALLATIGEPANAVTGDNNHEVPLSWILTQLGIVGFFYFLVFPPIIM 122

Query: 121 NWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQI 180
           NWLRIRWYRRNLLEMYLQFMCVFLFFPGIL+WAPFLNFRK PRDPS+KYPW+TPE+PSQ+
Sbjct: 123 NWLRIRWYRRNLLEMYLQFMCVFLFFPGILVWAPFLNFRKLPRDPSLKYPWATPEDPSQV 182

Query: 181 KNAYLKYPFAKPEDYDW 196
           KNAYLKYPFAKPEDYDW
Sbjct: 183 KNAYLKYPFAKPEDYDW 197

[Close]

BLAST of ClCG01G006330 vs. TAIR 10
Match: AT1G70760.1 (inorganic carbon transport protein-related )

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-51
Identity = 105/191 (54.97%), Postives = 131/191 (68.59%), Query Frame = 0


Query: 4   SLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQH 63
           SLGL+ P ALPSLS       S+ S F + +   P+++  +N   V  +R      L   
Sbjct: 6   SLGLYAPNALPSLSLKPR---SVKSPFCITSHTKPNDTLLHN---VNKMRAKACDILGAK 65

Query: 64  KTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRI 123
           KT LA QL A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFL+ PPIIMNWLR+
Sbjct: 66  KTILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 125

Query: 124 RWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYL 183
           RWYRR   EMYLQFM VF+FFPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YL
Sbjct: 126 RWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYL 185

Query: 184 KYPFAKPEDYD 195
           KYP+A PEDYD
Sbjct: 186 KYPYATPEDYD 189

The following BLAST results are available for this feature:

BLAST of ClCG01G006330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875378.1	5.4e-101	92.82	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Benincasa hispida]	[more]
KAA0046329.1	2.9e-94	89.29	NAD(P)H-quinone oxidoreductase subunit L [Cucumis melo var. makuwa] >TYK30492.1 ...	[more]
XP_004150114.1	4.1e-93	87.24	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sativus]	[more]
KAE8648604.1	7.8e-92	87.18	hypothetical protein Csa_008632 [Cucumis sativus]	[more]
XP_023527074.1	7.3e-90	85.64	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita pe...	[more]

BLAST of ClCG01G006330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAC5	4.5e-50	54.97	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q7U620	1.2e-05	40.00	NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) OX...	[more]
Q10W93	1.5e-05	46.94	NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS...	[more]
Q8DKZ3	2.6e-05	40.63	NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strai...	[more]
B0C6G0	3.4e-05	43.75	NAD(P)H-quinone oxidoreductase subunit L OS=Acaryochloris marina (strain MBIC 11...	[more]

BLAST of ClCG01G006330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E3M5	1.4e-94	89.29	NAD(P)H-quinone oxidoreductase subunit L OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KSV9	2.0e-93	87.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G569340 PE=4 SV=1	[more]
A0A6J1GNR4	3.0e-89	84.62	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita ...	[more]
A0A6J1GQ77	3.3e-88	84.62	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Cucurbita ...	[more]
A0A6J1DYB3	1.3e-87	82.74	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Momordica ...	[more]

BLAST of ClCG01G006330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70760.1	3.2e-51	54.97	inorganic carbon transport protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019654	NAD(P)H-quinone oxidoreductase subunit L	PFAM	PF10716	NdhL	coord: 90..162 e-value: 3.8E-29 score: 100.5
None	No IPR available	PANTHER	PTHR36727	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT L, CHLOROPLASTIC	coord: 1..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G006330.2	ClCG01G006330.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding