ClCG01G005965 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G005965
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	E3 ubiquitin-protein ligase RHA2A
Location	CG_Chr01: 6579358 .. 6579807 (-)
RNA-Seq Expression	ClCG01G005965
Synteny	ClCG01G005965

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTACAGAGCCAACTCAACGATTTCTCCTACCACTCTCTCCCTCTCTTCTTTCTCTCTCTCCTCGCCAATTTCGTCTCCCTTCTCCGCTCTTTCCTCTCCGCCGCCCCTCCCTCCGCCGACCACCGTCTCCCTCTCCCTGATATTTCCCCTCTCCCCCATCACCTTCATCTCAATCGCCTCCTCTCCCACCGCTACGCTCACTCCGACCACGATTCTGCCTCCGACTGCGTCGTCTGTCTCTCCCCTCTCTCCGCCGGCCACCTCGTCCGCCGCCTTCCCTGCCGCCACGTCTTCCACAAGGACTGCCTTGACGGCTGGCTTCACCATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCCCTTCTTCTAGACCAGCGCGTTCCCCTCACGCGCCACCGCTTCCGTCTCCCTGACCACGTTATCGCTTGGTTCTCTCTTCGATGA

mRNA sequence

ATGGGTTTACAGAGCCAACTCAACGATTTCTCCTACCACTCTCTCCCTCTCTTCTTTCTCTCTCTCCTCGCCAATTTCGTCTCCCTTCTCCGCTCTTTCCTCTCCGCCGCCCCTCCCTCCGCCGACCACCGTCTCCCTCTCCCTGATATTTCCCCTCTCCCCCATCACCTTCATCTCAATCGCCTCCTCTCCCACCGCTACGCTCACTCCGACCACGATTCTGCCTCCGACTGCGTCGTCTGTCTCTCCCCTCTCTCCGCCGGCCACCTCGTCCGCCGCCTTCCCTGCCGCCACGTCTTCCACAAGGACTGCCTTGACGGCTGGCTTCACCATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCCCTTCTTCTAGACCAGCGCGTTCCCCTCACGCGCCACCGCTTCCGTCTCCCTGACCACGTTATCGCTTGGTTCTCTCTTCGATGA

Coding sequence (CDS)

ATGGGTTTACAGAGCCAACTCAACGATTTCTCCTACCACTCTCTCCCTCTCTTCTTTCTCTCTCTCCTCGCCAATTTCGTCTCCCTTCTCCGCTCTTTCCTCTCCGCCGCCCCTCCCTCCGCCGACCACCGTCTCCCTCTCCCTGATATTTCCCCTCTCCCCCATCACCTTCATCTCAATCGCCTCCTCTCCCACCGCTACGCTCACTCCGACCACGATTCTGCCTCCGACTGCGTCGTCTGTCTCTCCCCTCTCTCCGCCGGCCACCTCGTCCGCCGCCTTCCCTGCCGCCACGTCTTCCACAAGGACTGCCTTGACGGCTGGCTTCACCATCTCAACTTCAACTGCCCTCTCTGCCGCTCTCCCCTTCTTCTAGACCAGCGCGTTCCCCTCACGCGCCACCGCTTCCGTCTCCCTGACCACGTTATCGCTTGGTTCTCTCTTCGATGA

Protein sequence

MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR

Homology

[Close]

BLAST of ClCG01G005965 vs. NCBI nr
Match: KAG7032532.1 (E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.1 bits (518), Expect = 8.2e-49
Identity = 108/145 (74.48%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLL-RSFLSAAPPSADHRLPLPDISPLPHHLHL 60
           MGLQSQLNDFS  SLPLFFLSLLANF+SLL RSFLS+  PS D      DISPL  HLHL
Sbjct: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPSPD-----SDISPLHQHLHL 60

Query: 61  NRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLC 120
           NRLLSHRY ++D  +ASDCVVCL PLSAG+ VRRLPC H+FHKDCLDGWLHHLNFNCPLC
Sbjct: 61  NRLLSHRY-YAD-SAASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLC 120

Query: 121 RSPLLLDQRVPLTRHRFRLPDHVIA 145
           RSP+ L QRVP T H   LP HV+A
Sbjct: 121 RSPIHLHQRVPFTLHS-PLPHHVLA 137

[Close]

BLAST of ClCG01G005965 vs. NCBI nr
Match: XP_022006424.1 (E3 ubiquitin-protein ligase RHA2B [Helianthus annuus] >KAF5777337.1 putative transcription factor C2H2 family [Helianthus annuus])

HSP 1 Score: 154.1 bits (388), Expect = 9.7e-34
Identity = 83/154 (53.90%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRS----FLSAAPPSADHRLPLPDISPLPHH 60
           MGLQ+ L D S  SLPL  L+ +A  VS LRS    FL  +P  +D     P +  L HH
Sbjct: 1   MGLQNHLTDVSSDSLPLLLLATIATAVSYLRSLFFTFLGISPYPSDD----PMLLTLSHH 60

Query: 61  LHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNC 120
           L+LN LLS  Y H      SDCVVCL+ L+AG  VR+LPC HVFHK+C DGWLHHLNFNC
Sbjct: 61  LNLNSLLS--YKHDPDPVDSDCVVCLNRLTAGEHVRKLPCHHVFHKECFDGWLHHLNFNC 120

Query: 121 PLCRSPLLLDQRVPLTRHR-FRLPDHVIAWFSLR 150
           PLCRSP++ D+RV +TR R +   + VI WF  R
Sbjct: 121 PLCRSPVVFDERVVVTRRRQWWFMNDVIGWFDFR 148

[Close]

BLAST of ClCG01G005965 vs. NCBI nr
Match: XP_010096722.1 (E3 ubiquitin-protein ligase RHA2A [Morus notabilis] >EXB65574.1 E3 ubiquitin-protein ligase RHA2A [Morus notabilis])

HSP 1 Score: 151.4 bits (381), Expect = 6.3e-33
Identity = 83/162 (51.23%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPD---------IS 60
           MGLQSQLND S  S+PL  ++++AN VS +RS L    P      P+ D         + 
Sbjct: 1   MGLQSQLNDVSSDSIPLLLVAIIANCVSYVRSVLLGLLPQRFGPEPVDDGLLGSGLAGLI 60

Query: 61  PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHH 120
            L   L+LNR+ S+RY+       SDCVVCLS L+ G  VRRL CRHVFHKDC DGWL H
Sbjct: 61  VLAEQLNLNRVFSYRYSDGGAGGGSDCVVCLSTLTPGDQVRRLSCRHVFHKDCFDGWLGH 120

Query: 121 LNFNCPLCRSPLL----LDQRVPLTRHRFRLPDHVIAWFSLR 150
           LNF+CPLCRSPL+     D+ V LTR R R+   ++AWFSLR
Sbjct: 121 LNFSCPLCRSPLVSAAAADESVELTRRR-RVGSDLVAWFSLR 161

[Close]

BLAST of ClCG01G005965 vs. NCBI nr
Match: XP_002283507.1 (PREDICTED: E3 ubiquitin-protein ligase RHA2A [Vitis vinifera])

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-30
Identity = 82/165 (49.70%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSA-----------APPSADHRL---- 60
           MGLQSQLND S  S+PL  ++++AN V+ +RS L             A    D  L    
Sbjct: 1   MGLQSQLNDVSSDSIPLLLVAIIANCVAYIRSLLLGLFQSMGLSRFDADEVEDGLLGAVG 60

Query: 61  -PLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDC 120
             L  +  L   L+LNR+ S+RY   D  +ASDCVVCL  L  G  VRRL CRHVFHK+C
Sbjct: 61  SGLASLIVLAEQLNLNRVFSYRYG-EDGGAASDCVVCLCRLRDGDQVRRLACRHVFHKEC 120

Query: 121 LDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR 150
            DGWL HLNFNCPLCRSPL+ D+RV LT+   R+   ++ WFSLR
Sbjct: 121 FDGWLDHLNFNCPLCRSPLVSDERVALTQR--RVGGDLVTWFSLR 162

[Close]

BLAST of ClCG01G005965 vs. NCBI nr
Match: XP_038707458.1 (E3 ubiquitin-protein ligase RHA2A [Tripterygium wilfordii])

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-30
Identity = 80/162 (49.38%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSA----------APPSADHRL---PL 60
           MGLQ QLND S  S+PL  ++L+AN  + LRSFL             P   +  L    L
Sbjct: 1   MGLQGQLNDVSSDSIPLLLVALIANCFNSLRSFLFGLLQSTGIYRFGPAHVEDGLLGSGL 60

Query: 61  PDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDG 120
             +  L   L+LNRL S+RY   + D  + CVVCLS L  G  VR L CRHVFHKDC DG
Sbjct: 61  AGLIVLAEQLNLNRLFSYRYC-CNRDCGNKCVVCLSMLRDGDQVRELSCRHVFHKDCFDG 120

Query: 121 WLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR 150
           WL HLNFNCPLCRSPL+ D+RV +TR   R+ + ++AWF +R
Sbjct: 121 WLDHLNFNCPLCRSPLVSDERVTVTRR--RVGEDLVAWFPIR 159

[Close]

BLAST of ClCG01G005965 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-30
Identity = 71/124 (57.26%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLN 60
           MGLQ QL+D S  S+PL  L+LLA F   +RS L   P SA   +   ++S L   L+LN
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLL-LFPSSAPVVVVTSNLSVLADQLNLN 60

Query: 61  RLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCR 120
           RL S+RY+    ++ASDC+VCLS L  G  VR+L CRHVFHK CL+GWL HLNFNCPLCR
Sbjct: 61  RLFSYRYS---DNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCR 120

Query: 121 SPLL 125
           SPLL
Sbjct: 121 SPLL 120

[Close]

BLAST of ClCG01G005965 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-29
Identity = 72/142 (50.70%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDIS--------- 60
           MGLQ QL+D S  S+PL  LSLLA F++ LRSFL      ++  LP+ D+S         
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTSKSNPNLPVDDVSIASGLANII 60

Query: 61  PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHH 120
            L   L LNRL S+R         SDCVVCLS L  G  VR+L CRHVFHK CL+GWLH 
Sbjct: 61  VLADQLSLNRLFSYRCGDGG-GGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQ 120

Query: 121 LNFNCPLCRSPLLLDQRVPLTR 134
            NF CPLCRS L+ D  V  T+
Sbjct: 121 FNFTCPLCRSALVSDDCVSKTQ 141

[Close]

BLAST of ClCG01G005965 vs. ExPASy Swiss-Prot
Match: Q9Y252 (E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens OX=9606 GN=RNF6 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 59  LNRLLSHRYAHSDHDS--ASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNC 118
           ++ L +  Y H+  DS     C VC+S    G+ +R+LPC H FH  C+D WL   N  C
Sbjct: 611 IDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSE-NCTC 670

Query: 119 PLCRSPLL 125
           P+CR P+L
Sbjct: 671 PICRQPVL 677

[Close]

BLAST of ClCG01G005965 vs. ExPASy Swiss-Prot
Match: Q8GYT9 (E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana OX=3702 GN=SIS3 PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 73  DSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLD 127
           D   +C++CL     GH VR LPC H FH +C+D WL  LN  CP CR  +  D
Sbjct: 230 DDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWL-RLNVKCPRCRCSVFPD 282

[Close]

BLAST of ClCG01G005965 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 76  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL 126
           ++C VCLS       + +L C H+FHK CL+ W+ + N  CPLCR+PL++
Sbjct: 101 NECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVV 150

[Close]

BLAST of ClCG01G005965 vs. ExPASy TrEMBL
Match: A0A251SN01 (Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0459201 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.7e-34
Identity = 83/154 (53.90%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRS----FLSAAPPSADHRLPLPDISPLPHH 60
           MGLQ+ L D S  SLPL  L+ +A  VS LRS    FL  +P  +D     P +  L HH
Sbjct: 1   MGLQNHLTDVSSDSLPLLLLATIATAVSYLRSLFFTFLGISPYPSDD----PMLLTLSHH 60

Query: 61  LHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNC 120
           L+LN LLS  Y H      SDCVVCL+ L+AG  VR+LPC HVFHK+C DGWLHHLNFNC
Sbjct: 61  LNLNSLLS--YKHDPDPVDSDCVVCLNRLTAGEHVRKLPCHHVFHKECFDGWLHHLNFNC 120

Query: 121 PLCRSPLLLDQRVPLTRHR-FRLPDHVIAWFSLR 150
           PLCRSP++ D+RV +TR R +   + VI WF  R
Sbjct: 121 PLCRSPVVFDERVVVTRRRQWWFMNDVIGWFDFR 148

[Close]

BLAST of ClCG01G005965 vs. ExPASy TrEMBL
Match: W9RAQ2 (E3 ubiquitin-protein ligase RHA2A OS=Morus notabilis OX=981085 GN=L484_025840 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.0e-33
Identity = 83/162 (51.23%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPD---------IS 60
           MGLQSQLND S  S+PL  ++++AN VS +RS L    P      P+ D         + 
Sbjct: 1   MGLQSQLNDVSSDSIPLLLVAIIANCVSYVRSVLLGLLPQRFGPEPVDDGLLGSGLAGLI 60

Query: 61  PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHH 120
            L   L+LNR+ S+RY+       SDCVVCLS L+ G  VRRL CRHVFHKDC DGWL H
Sbjct: 61  VLAEQLNLNRVFSYRYSDGGAGGGSDCVVCLSTLTPGDQVRRLSCRHVFHKDCFDGWLGH 120

Query: 121 LNFNCPLCRSPLL----LDQRVPLTRHRFRLPDHVIAWFSLR 150
           LNF+CPLCRSPL+     D+ V LTR R R+   ++AWFSLR
Sbjct: 121 LNFSCPLCRSPLVSAAAADESVELTRRR-RVGSDLVAWFSLR 161

[Close]

BLAST of ClCG01G005965 vs. ExPASy TrEMBL
Match: A0A6A1V0Q0 (E3 ubiquitin-protein ligase RHA2A OS=Morella rubra OX=262757 GN=CJ030_MR7G017790 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.9e-31
Identity = 84/166 (50.60%), Postives = 99/166 (59.64%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAA------PPSADHRLP-------- 60
           MGLQSQLND S  S+PL  LSL+AN VS LRS L           S  +R+         
Sbjct: 1   MGLQSQLNDVSSESIPLLLLSLIANCVSYLRSLLFGVIHSLGISRSTPYRVDDGFLGAVG 60

Query: 61  --LPDISPLPHHLHLNRLLSHRY-AHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKD 120
             L  +  L   L+ NR+ S+ Y A  D     DCVVCLS L  G  VRRLPCRHVFHK+
Sbjct: 61  SGLAGLIVLADELNQNRVCSYEYAAGEDGVGRPDCVVCLSTLREGDQVRRLPCRHVFHKE 120

Query: 121 CLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR 150
           C +GWL HLNFNCPLCRSPL+ D+RV L     R+   ++AWFSLR
Sbjct: 121 CFNGWLDHLNFNCPLCRSPLVSDERVALASR--RVGSDLVAWFSLR 164

[Close]

BLAST of ClCG01G005965 vs. ExPASy TrEMBL
Match: A0A6J1BIW9 (E3 ubiquitin-protein ligase RHA2A OS=Herrania umbratica OX=108875 GN=LOC110428045 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.1e-30
Identity = 78/167 (46.71%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISP-------- 60
           MGLQSQLND S  S+PL  ++L+AN +  LR+ L     S    LP PD +P        
Sbjct: 1   MGLQSQLNDVSSDSIPLLLVALVANCLGCLRNLLLDLLQSTG-LLPCPDRTPTTIDDVGV 60

Query: 61  ----------LPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHK 120
                     +   L+LN++ S+RY        SDC+VCL  L  G  VR+L C HVFHK
Sbjct: 61  LGSGLAGLIVVAEQLNLNKVFSYRYCGGAGGGVSDCMVCLCTLRDGEQVRKLDCCHVFHK 120

Query: 121 DCLDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSLR 150
           DC DGWL HLNFNCPLCRSPL  DQRV + R   R+ + ++AWF LR
Sbjct: 121 DCFDGWLDHLNFNCPLCRSPLKTDQRVEIARR--RVSEDLLAWFPLR 164

[Close]

BLAST of ClCG01G005965 vs. ExPASy TrEMBL
Match: A0A5J5APN9 (RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_032554 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.1e-30
Identity = 76/164 (46.34%), Postives = 98/164 (59.76%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAA----------PPSADHRL----- 60
           MGLQ+QLND S  S+P+  ++++AN V  LRS L A           P   D  L     
Sbjct: 1   MGLQNQLNDVSSESIPILLVAIIANCVRYLRSLLFALLRSVGLSRFDPDDVDEGLLGAVG 60

Query: 61  -PLPDISPLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDC 120
             L  +  +   L+LNR+ S+RY+  D    SDCVVCL  L+ G  VR+L CRHVFHK+C
Sbjct: 61  SGLAGLVVMAEQLNLNRVFSYRYSSEDRGVGSDCVVCLCGLTDGDQVRKLACRHVFHKEC 120

Query: 121 LDGWLHHLNFNCPLCRSPLLLDQRVPLTRHRFRLPDHVIAWFSL 149
            DGWL HL FNCPLCRSPL+ ++RV LT    R+   ++ WFSL
Sbjct: 121 FDGWLDHLKFNCPLCRSPLVSEERVALTDR--RVAGDLVTWFSL 162

[Close]

BLAST of ClCG01G005965 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 134.0 bits (336), Expect = 9.7e-32
Identity = 71/124 (57.26%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDISPLPHHLHLN 60
           MGLQ QL+D S  S+PL  L+LLA F   +RS L   P SA   +   ++S L   L+LN
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLL-LFPSSAPVVVVTSNLSVLADQLNLN 60

Query: 61  RLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCR 120
           RL S+RY+    ++ASDC+VCLS L  G  VR+L CRHVFHK CL+GWL HLNFNCPLCR
Sbjct: 61  RLFSYRYS---DNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCR 120

Query: 121 SPLL 125
           SPLL
Sbjct: 121 SPLL 120

[Close]

BLAST of ClCG01G005965 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-30
Identity = 72/142 (50.70%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 1   MGLQSQLNDFSYHSLPLFFLSLLANFVSLLRSFLSAAPPSADHRLPLPDIS--------- 60
           MGLQ QL+D S  S+PL  LSLLA F++ LRSFL      ++  LP+ D+S         
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTSKSNPNLPVDDVSIASGLANII 60

Query: 61  PLPHHLHLNRLLSHRYAHSDHDSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHH 120
            L   L LNRL S+R         SDCVVCLS L  G  VR+L CRHVFHK CL+GWLH 
Sbjct: 61  VLADQLSLNRLFSYRCGDGG-GGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQ 120

Query: 121 LNFNCPLCRSPLLLDQRVPLTR 134
            NF CPLCRS L+ D  V  T+
Sbjct: 121 FNFTCPLCRSALVSDDCVSKTQ 141

[Close]

BLAST of ClCG01G005965 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-10
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 76  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL 126
           ++C VCLS       + +L C H+FHK CL+ W+ + N  CPLCR+PL++
Sbjct: 101 NECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVV 150

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BLAST of ClCG01G005965 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-10
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 76  SDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLL 126
           ++C VCLS       + +L C H+FHK CL+ W+ + N  CPLCR+PL++
Sbjct: 101 NECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPLVV 150

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BLAST of ClCG01G005965 vs. TAIR 10
Match: AT3G47990.1 (SUGAR-INSENSITIVE 3 )

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-10
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 73  DSASDCVVCLSPLSAGHLVRRLPCRHVFHKDCLDGWLHHLNFNCPLCRSPLLLD 127
           D   +C++CL     GH VR LPC H FH +C+D WL  LN  CP CR  +  D
Sbjct: 230 DDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWL-RLNVKCPRCRCSVFPD 282

The following BLAST results are available for this feature:

BLAST of ClCG01G005965 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032532.1	8.2e-49	74.48	E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022006424.1	9.7e-34	53.90	E3 ubiquitin-protein ligase RHA2B [Helianthus annuus] >KAF5777337.1 putative tra...	[more]
XP_010096722.1	6.3e-33	51.23	E3 ubiquitin-protein ligase RHA2A [Morus notabilis] >EXB65574.1 E3 ubiquitin-pro...	[more]
XP_002283507.1	1.0e-30	49.70	PREDICTED: E3 ubiquitin-protein ligase RHA2A [Vitis vinifera]	[more]
XP_038707458.1	1.0e-30	49.38	E3 ubiquitin-protein ligase RHA2A [Tripterygium wilfordii]	[more]

BLAST of ClCG01G005965 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZU51	1.4e-30	57.26	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9ZT50	4.4e-29	50.70	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9Y252	6.6e-09	41.18	E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens OX=9606 GN=RNF6 PE=1 SV=1	[more]
Q8GYT9	6.6e-09	46.30	E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana OX=3702 GN=SIS3 PE=2 SV...	[more]
Q9SI09	6.6e-09	44.00	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]

BLAST of ClCG01G005965 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A251SN01	4.7e-34	53.90	Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ...	[more]
W9RAQ2	3.0e-33	51.23	E3 ubiquitin-protein ligase RHA2A OS=Morus notabilis OX=981085 GN=L484_025840 PE...	[more]
A0A6A1V0Q0	4.9e-31	50.60	E3 ubiquitin-protein ligase RHA2A OS=Morella rubra OX=262757 GN=CJ030_MR7G017790...	[more]
A0A6J1BIW9	3.1e-30	46.71	E3 ubiquitin-protein ligase RHA2A OS=Herrania umbratica OX=108875 GN=LOC11042804...	[more]
A0A5J5APN9	3.1e-30	46.34	RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_032554 ...	[more]

BLAST of ClCG01G005965 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01150.1	9.7e-32	57.26	RING-H2 finger protein 2B	[more]
AT1G15100.1	3.1e-30	50.70	RING-H2 finger A2A	[more]
AT2G04240.1	4.7e-10	44.00	RING/U-box superfamily protein	[more]
AT2G04240.2	4.7e-10	44.00	RING/U-box superfamily protein	[more]
AT3G47990.1	4.7e-10	46.30	SUGAR-INSENSITIVE 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 148..149
None	No IPR available	PANTHER	PTHR45969:SF5	E3 UBIQUITIN-PROTEIN LIGASE RHA2A	coord: 53..144
None	No IPR available	PANTHER	PTHR45969:SF5	E3 UBIQUITIN-PROTEIN LIGASE RHA2A	coord: 1..35
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 1..35
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 53..144
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 59..126
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 78..119 e-value: 1.8E-6 score: 37.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 77..120 e-value: 5.4E-12 score: 45.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 78..120 score: 12.592549
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 56..127 e-value: 1.9E-18 score: 67.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G005965.1	ClCG01G005965.1	mRNA