
ClCG01G005860 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACGCACTGCGGCGTCGCTCAGAGTCCCACTTTAAGTCCTAGGACCAGTCCTCTTGTTCATCTCCGACGCCGGAAAACCACTCTACGGATGCTTCTCACTCTGAATTCCGGCCGTCGGTCTCCTCGCCGCCGCGCCTTGCCGGAGAAGAAGAGAGACGACCATAAGGATTTTTCCCGGAGCAATACGTTGAAGGATTTGTTCGTTTCGTCGCCGCCCTATGTTGGAACTGACGGCGATGTTCACGAGACGACGGTCGCGGCTCCGTCCCGGAACGTGACTCCGGTTTGTAAGGAGAAGGAGTATGGTGAGGTTGGATCAGCCGGTTGGAATCCCGGTTCACCTAGACCCGGTTGGACCGGTTTCCGATACAAATACCTTCTTCGGAAAACTTGGCGGCCGGTACTCGCCGGAATCCCCGAGTAATGGATGATCATTTTAAAAATATTTTTAACCCTTTCTATAATTAATTAAAAAATAAATATATATATCTGATCTAATATTCTCTGTTCTTTTTAGTATAGTTTTTAATTTTTACTTGAAATAGGGGTGGGGGAAGGATTAAGATCTTAATCAAGGGGGTTTAGGGAAATAATTTGTTATATGGAAATTATGAATAGATTTCCCATGAGTTGGAATTTGCTTATTTTCTGTCAAATTTTACTTTGTGATTAGCTTTATTATTTGTTTAACTTTTCTTTCTTTGAATTTTCAAATCATATATTAATTAGTCAAATTAATTCTATACAATTTGTAGTTCTGGTCCATGTTACAACAAAATCAGCACCAAATTTAAAGCTTAAACCTTGATTTTCTTTAATTGTGTTATTTTAATTTATAAAATTTTGTTCTTAAATTTGTATGGTTAAGTTAGAGTTAACAAGTCCTTCCTAAACAAATCTTTGACCCCACTTTGACCATAGTCAAGATTAGTCAGTTAAATTTGAGTTAACAAATATACTAATGGCCTATCTCAATTATTGTTTTCAGTTGATATAAGTCCCAAAATTTGATTGTAGTCCAAATTGATTAAATTATTGATTTGAGTGTGACATGCAAATATGAAAATCAGCCAGAGATGGACATAGGAATATACTTCTTTCTTATATGTATATATATTTTATAGATTCTTGCCTGCAATGGTTAAGAGTAGTGGTCTACATGTGACTTGGATTTTTCATTTGTGGAGGGACCTCTTTTTTCCCTTTATTCCATGGAGAGATCTTTTTAAGACTTAAAAACTCAATTTTACATTGACAAATGCTTGAGTGCATACGTAAACTCACTCGATGTCAAATAATAGTTGATCCGTTGTCAAATAATAGTTGTCATGTGGCAAATTCTTTTTCTTATTTTATTTTTTGGATTGCATAAAGATAGTTACAGCTCAAGATGCACCAAGTATTATTCTTCTATTATTTACTGGACTTCCAAACCCATAAATTTGACACCTTTCTCGTTATGTTTTGATTATAGAAAATGACAACAAATGCTTGTATATATACTTTTTGGCCAGTTTGTTGTACATGTGGGACACTCACTGGCCTCTCGTTGGGACACTCACTGACCTCTCGTATGCATTGTCGCGTGCGTGTCCCATGTGTTCGCTCGCGCCCACCCAATGCCTCCACTCGTATGCACGCCCATTCTACACCCTTTGCACACAAGCACGAGCGTTGGTGGGTATGCATGACCCCGCGCATGGGGTACCATGGGTGTTATGTGGACTAA ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACGCACTGCGGCGTCGCTCAGAGTCCCACTTTAAGTCCTAGGACCAGTCCTCTTGTTCATCTCCGACGCCGGAAAACCACTCTACGGATGCTTCTCACTCTGAATTCCGGCCGTCGGTCTCCTCGCCGCCGCGCCTTGCCGGAGAAGAAGAGAGACGACCATAAGGATTTTTCCCGGAGCAATACGTTGAAGGATTTGTTCGTTTCGTCGCCGCCCTATGTTGGAACTGACGGCGATGTTCACGAGACGACGGTCGCGGCTCCGTCCCGGAACGTGACTCCGGTTTGTAAGGAGAAGGAGTATGGTGAGGTTGGATCAGCCGGTTGGAATCCCGGTTCACCTAGACCCGGTTGGACCGGTTTCCGATACAAATACCTTCTTCGGAAAACTTGGCGGCCGAAAATGACAACAAATGCTTGTATATATACTTTTTGGCCAGTTTGTTGTACATGTGGGACACTCACTGGCCTCTCGTTGGGACACTCACTGACCTCTCGTATGCATTGTCGCGTGCGTGTCCCATGTGTTCGCTCGCGCCCACCCAATGCCTCCACTCGTATGCACGCCCATTCTACACCCTTTGCACACAAGCACGAGCGTTGGTGGGTATGCATGACCCCGCGCATGGGGTACCATGGGTGTTATGTGGACTAA ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACGCACTGCGGCGTCGCTCAGAGTCCCACTTTAAGTCCTAGGACCAGTCCTCTTGTTCATCTCCGACGCCGGAAAACCACTCTACGGATGCTTCTCACTCTGAATTCCGGCCGTCGGTCTCCTCGCCGCCGCGCCTTGCCGGAGAAGAAGAGAGACGACCATAAGGATTTTTCCCGGAGCAATACGTTGAAGGATTTGTTCGTTTCGTCGCCGCCCTATGTTGGAACTGACGGCGATGTTCACGAGACGACGGTCGCGGCTCCGTCCCGGAACGTGACTCCGGTTTGTAAGGAGAAGGAGTATGGTGAGGTTGGATCAGCCGGTTGGAATCCCGGTTCACCTAGACCCGGTTGGACCGGTTTCCGATACAAATACCTTCTTCGGAAAACTTGGCGGCCGAAAATGACAACAAATGCTTGTATATATACTTTTTGGCCAGTTTGTTGTACATGTGGGACACTCACTGGCCTCTCGTTGGGACACTCACTGACCTCTCGTATGCATTGTCGCGTGCGTGTCCCATGTGTTCGCTCGCGCCCACCCAATGCCTCCACTCGTATGCACGCCCATTCTACACCCTTTGCACACAAGCACGAGCGTTGGTGGGTATGCATGACCCCGCGCATGGGGTACCATGGGTGTTATGTGGACTAA MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTLNSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYVGTDGDVHETTVAAPSRNVTPVCKEKEYGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPKMTTNACIYTFWPVCCTCGTLTGLSLGHSLTSRMHCRVRVPCVRSRPPNASTRMHAHSTPFAHKHERWWVCMTPRMGYHGCYVD Homology
BLAST of ClCG01G005860 vs. NCBI nr
Match: XP_038875200.1 (uncharacterized protein LOC120067717 [Benincasa hispida]) HSP 1 Score: 272.3 bits (695), Expect = 3.7e-69 Identity = 132/144 (91.67%), Postives = 136/144 (94.44%), Query Frame = 0
BLAST of ClCG01G005860 vs. NCBI nr
Match: XP_011655483.1 (uncharacterized protein LOC105435544 [Cucumis sativus] >KGN51540.1 hypothetical protein Csa_008562 [Cucumis sativus]) HSP 1 Score: 256.1 bits (653), Expect = 2.8e-64 Identity = 129/146 (88.36%), Postives = 133/146 (91.10%), Query Frame = 0
BLAST of ClCG01G005860 vs. NCBI nr
Match: KAG7032525.1 (hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 253.4 bits (646), Expect = 1.8e-63 Identity = 123/144 (85.42%), Postives = 133/144 (92.36%), Query Frame = 0
BLAST of ClCG01G005860 vs. NCBI nr
Match: XP_008467191.1 (PREDICTED: uncharacterized protein LOC103504599 [Cucumis melo] >TYK00268.1 uncharacterized protein E5676_scaffold1728G00090 [Cucumis melo var. makuwa]) HSP 1 Score: 252.3 bits (643), Expect = 4.0e-63 Identity = 132/148 (89.19%), Postives = 134/148 (90.54%), Query Frame = 0
BLAST of ClCG01G005860 vs. NCBI nr
Match: KAG6601820.1 (hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 251.1 bits (640), Expect = 8.9e-63 Identity = 122/144 (84.72%), Postives = 132/144 (91.67%), Query Frame = 0
BLAST of ClCG01G005860 vs. ExPASy TrEMBL
Match: A0A0A0KPK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576820 PE=4 SV=1) HSP 1 Score: 256.1 bits (653), Expect = 1.3e-64 Identity = 129/146 (88.36%), Postives = 133/146 (91.10%), Query Frame = 0
BLAST of ClCG01G005860 vs. ExPASy TrEMBL
Match: A0A5D3BMD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00090 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 1.9e-63 Identity = 132/148 (89.19%), Postives = 134/148 (90.54%), Query Frame = 0
BLAST of ClCG01G005860 vs. ExPASy TrEMBL
Match: A0A1S3CSY3 (uncharacterized protein LOC103504599 OS=Cucumis melo OX=3656 GN=LOC103504599 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 1.9e-63 Identity = 132/148 (89.19%), Postives = 134/148 (90.54%), Query Frame = 0
BLAST of ClCG01G005860 vs. ExPASy TrEMBL
Match: A0A6J1HGM7 (uncharacterized protein LOC111463373 OS=Cucurbita moschata OX=3662 GN=LOC111463373 PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 1.3e-62 Identity = 121/148 (81.76%), Postives = 134/148 (90.54%), Query Frame = 0
BLAST of ClCG01G005860 vs. ExPASy TrEMBL
Match: A0A6J1I9M9 (uncharacterized protein LOC111470493 OS=Cucurbita maxima OX=3661 GN=LOC111470493 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 1.3e-59 Identity = 119/144 (82.64%), Postives = 129/144 (89.58%), Query Frame = 0
BLAST of ClCG01G005860 vs. TAIR 10
Match: AT1G68430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 75.9 bits (185), Expect = 4.8e-14 Identity = 61/151 (40.40%), Postives = 75/151 (49.67%), Query Frame = 0
BLAST of ClCG01G005860 vs. TAIR 10
Match: AT1G66890.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 70.9 bits (172), Expect = 1.5e-12 Identity = 69/159 (43.40%), Postives = 88/159 (55.35%), Query Frame = 0
BLAST of ClCG01G005860 vs. TAIR 10
Match: AT5G16200.1 (50S ribosomal protein-related ) HSP 1 Score: 53.1 bits (126), Expect = 3.3e-07 Identity = 62/173 (35.84%), Postives = 82/173 (47.40%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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