ClCG01G004870 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G004870
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	60S ribosomal protein L13
Location	CG_Chr01: 5157682 .. 5159774 (-)
RNA-Seq Expression	ClCG01G004870
Synteny	ClCG01G004870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAACGAAGAAGATTGGAATTGCACAAGGGGCGTAGAGAGAAATACAAAGGTTCATTTTCATTTCAATTTCAACTTCAATTGCCTCTGTGTTACGTTCTTCTGCTAACTTTAACTTGATTTTCGTTTTCTGGAAACTATACAATGTTCGACTAGGGTTTTTAGTTCCCTATTTACCAGTCCTGAATCTGTTTAGAAGGATTGTTGTTGTTGGGTTTTCTTTTTGATTTATGAATTTTCTTGGTGTCCTACGAATTTTGTCCACATTGTTTCCGCATGTGGTTTTTCTTCGAGGGATTTGTTTTTCTTTTTTCGATCGTTTTCGTTTTGGGTTTTATTCCAATTGTTGTCTGCAGTTTTATGTTTATATTATCCTTGTTTTAGGAAAATAAAATAGCTAAAACTAAGTTTGATGTCAGTGTGTTAACGGAATTTATTTAGATTGAAGTTAGACATCTACCAAATTTTCTGACATACAGGATATAAAATGAAGTTTCTTTCTTTGGTTGGAGTATTAACTCAACTTTTTGAGCAGGTAAGCCATGAAGCATAACAATGTTATCCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTTAGAACTTGGTTCAATCAGCCTGCTCGTAAAACAAGGAGAAGGAATGGTGAGTGCCTGGGTTTTCTGCTAGTTTATCCATATGGTTAAATGTTGTATTGTTTTATTCTAATAGATTTTGATTTTTTTTTTTTGTGTGTGTAAATGGTCATTAGCTCGTCAAGAAAAGGCTGTGAAAACTTTCCCTCGGCCTACTGCTGGACCACTTCGACCTATTGTTCATGGGCAGACGTTGAAGTATAATATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGTGGGATTTTTTTTTTGGGAGTTTCTTGGATGTGCATATATAATTCAGTTTATATTTATTTTGTTTTATATTTGGACAAATAAAGTATTGATAAGCATCTTCATTTTTCTCATATATAAGTGACAGAAGTCAGAAGCTTTGCTTATAGCACTTTTGTTTTTTTTTTCTTTCTATCATGTGTGCAAGTTCTGTACATGGTAAAATTGTCTATTTTGGAAGTCTCGTGAGCATGATATGGAGTAGAAATATTTGATGTATCACGACGGCTGTGAATGTCTATGAATGCATATCCTTTTTAGAGTGTAGAGTTGCATAATGGATTCAAGAACACATTTGCACGTTTAATGATTGTTTGGATTCTGTAGAGATCATTCCTCAGTTGATTCTCTTCAAGATCATTGACAAAAAATTTCATAAAACCAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGCAGAAACCGTTCCTTGGAGAGTCTTCAAGCAAATGTACAGAGGTTGAAGACTTACAAGGCCAAGGTGGTTGTCTTCCCACGACGTGCCCGCAAGTTCAAGGTAACTCTTCCAAATTCTGATTCCCAAAGCAATACAAATGATTACTTACACCATCTTGTATTTTTGGGACTGCCTTGATCTCTGATCAATTACGTTACCTTTTGATGTAGGCTGGCGATTCTACTCCTGAGGAACTAGCAACTGCCACCCAGGTCCAGGGCGCTTACCTGCCTATTGGATTAGAGAAGCCATCAGTGGAGCTTGTGAAGATCACAGAAGACATGAAGTCTTTCAAGGCTTATGACAAGCTTCGTGTTGAGCGAGCAAATGCCCGCCATGTTGGTGCTCGGTTGAAGAAGGCTGCCGAGGCAGAGAAGGAAGAGAAGAAGTAAATGGTTCCAAGTTTTTATTACAGTGCTCCCATATGTTTTGAGTGAATTTGTTTGGCCTTTAAATTTAGTACCCTTTCTCCCTTAATATGTGCAAACCTGAGTTATGAGTTCAATTTTGAAATGATTAGAGATTTGTTTTAATGCATATCGGACATACTCAGATTTCATATATGTTGCCACTTTCGGTTTCTTATTCATGCATTTTTGAGACGGTTATCTTGTGGCAAGCAAAAAACCATGTGCTATGATTATGAATGAAAGGGGCACTGAACCAGCGGTTGATTTTGTCTC

mRNA sequence

AAGGAACGAAGAAGATTGGAATTGCACAAGGGGCGTAGAGAGAAATACAAAGGTAAGCCATGAAGCATAACAATGTTATCCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTTAGAACTTGGTTCAATCAGCCTGCTCGTAAAACAAGGAGAAGGAATGCTCGTCAAGAAAAGGCTGTGAAAACTTTCCCTCGGCCTACTGCTGGACCACTTCGACCTATTGTTCATGGGCAGACGTTGAAGTATAATATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGCAGAAACCGTTCCTTGGAGAGTCTTCAAGCAAATGTACAGAGGTTGAAGACTTACAAGGCCAAGGTGGTTGTCTTCCCACGACGTGCCCGCAAGTTCAAGGCTGGCGATTCTACTCCTGAGGAACTAGCAACTGCCACCCAGGTCCAGGGCGCTTACCTGCCTATTGGATTAGAGAAGCCATCAGTGGAGCTTGTGAAGATCACAGAAGACATGAAGTCTTTCAAGGCTTATGACAAGCTTCGTGTTGAGCGAGCAAATGCCCGCCATGTTGGTGCTCGGTTGAAGAAGGCTGCCGAGGCAGAGAAGGAAGAGAAGAAGTAAATGGTTCCAAGTTTTTATTACAGTGCTCCCATATGTTTTGAGTGAATTTGTTTGGCCTTTAAATTTAGTACCCTTTCTCCCTTAATATGTGCAAACCTGAGTTATGAGTTCAATTTTGAAATGATTAGAGATTTGTTTTAATGCATATCGGACATACTCAGATTTCATATATGTTGCCACTTTCGGTTTCTTATTCATGCATTTTTGAGACGGTTATCTTGTGGCAAGCAAAAAACCATGTGCTATGATTATGAATGAAAGGGGCACTGAACCAGCGGTTGATTTTGTCTC

Coding sequence (CDS)

ATGAAGCATAACAATGTTATCCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTTAGAACTTGGTTCAATCAGCCTGCTCGTAAAACAAGGAGAAGGAATGCTCGTCAAGAAAAGGCTGTGAAAACTTTCCCTCGGCCTACTGCTGGACCACTTCGACCTATTGTTCATGGGCAGACGTTGAAGTATAATATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGCAGAAACCGTTCCTTGGAGAGTCTTCAAGCAAATGTACAGAGGTTGAAGACTTACAAGGCCAAGGTGGTTGTCTTCCCACGACGTGCCCGCAAGTTCAAGGCTGGCGATTCTACTCCTGAGGAACTAGCAACTGCCACCCAGGTCCAGGGCGCTTACCTGCCTATTGGATTAGAGAAGCCATCAGTGGAGCTTGTGAAGATCACAGAAGACATGAAGTCTTTCAAGGCTTATGACAAGCTTCGTGTTGAGCGAGCAAATGCCCGCCATGTTGGTGCTCGGTTGAAGAAGGCTGCCGAGGCAGAGAAGGAAGAGAAGAAGTAA

Protein sequence

MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKLRVERANARHVGARLKKAAEAEKEEKK

Homology

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BLAST of ClCG01G004870 vs. NCBI nr
Match: XP_004143667.1 (60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protein L13-3-like [Cucumis melo var. makuwa] >KGN50340.1 hypothetical protein Csa_000560 [Cucumis sativus])

HSP 1 Score: 399.4 bits (1025), Expect = 1.8e-107
Identity = 203/206 (98.54%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG+Y+PIGLEKPSVELVKITEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVERANARHVGARLKKAAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

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BLAST of ClCG01G004870 vs. NCBI nr
Match: XP_008467320.1 (PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo])

HSP 1 Score: 399.1 bits (1024), Expect = 2.4e-107
Identity = 202/206 (98.06%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG+Y+PIGLEKPSVELVK+TEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVERANARHVGARLKKAAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

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BLAST of ClCG01G004870 vs. NCBI nr
Match: XP_038907267.1 (60S ribosomal protein L13-3-like [Benincasa hispida] >XP_038907268.1 60S ribosomal protein L13-3-like [Benincasa hispida])

HSP 1 Score: 392.9 bits (1008), Expect = 1.7e-105
Identity = 199/206 (96.60%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYA TIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYARTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG+Y+PIGLEKPSVELVK+TEDMK+FKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKAFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVER NARHVGARLKKAAEAEKEEKK
Sbjct: 181 RVERTNARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. NCBI nr
Match: XP_022995473.1 (60S ribosomal protein L13-3-like [Cucurbita maxima] >XP_023532397.1 60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.7 bits (1005), Expect = 3.8e-105
Identity = 198/206 (96.12%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG+Y+PIGLEK  VELVK+TE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKAPVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEEKK 206

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BLAST of ClCG01G004870 vs. NCBI nr
Match: XP_022929155.1 (60S ribosomal protein L13-3-like [Cucurbita moschata] >KAG6579642.1 hypothetical protein SDJN03_24090, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017097.1 hypothetical protein SDJN02_22209 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 391.3 bits (1004), Expect = 5.0e-105
Identity = 198/206 (96.12%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG Y+ IGLEKPSVELVKITED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

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BLAST of ClCG01G004870 vs. ExPASy Swiss-Prot
Match: P41127 (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.2e-94
Identity = 170/206 (82.52%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG YLPI  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. ExPASy Swiss-Prot
Match: Q9FF90 (60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 7.8e-93
Identity = 168/206 (81.55%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKK APTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELA ATQVQG Y+PI   K ++ELVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER NARH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. ExPASy Swiss-Prot
Match: P41128 (60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.3e-91
Identity = 166/206 (80.58%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELK+AGIPKK APTIGIAVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELA ATQVQG Y+PI  EK + ELVK+T +MKS KA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. ExPASy Swiss-Prot
Match: P41129 (60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 4.3e-91
Identity = 165/206 (80.10%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGI++DHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELA ATQVQG Y+PI  EK ++ELVK+T +MKS  AYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. ExPASy Swiss-Prot
Match: Q9SMT4 (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.0e-80
Identity = 151/206 (73.30%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+K W+NYV+T FNQPA KTRRR ARQ KAVK FPRPTAGP+RP+VH Q
Sbjct: 1   MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TL YNMKVRAG+GF+LEELKAAGIPKK APTIGI+VDH R+NRSLE  Q NVQRLKTYKA
Sbjct: 61  TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPR AR  K GDS  +ELA ATQVQ  ++PI  E P++ELVK+T DMK F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+E  N RH G R K+AAEAEKEEKK
Sbjct: 181 RLEGINKRHAGVRAKRAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. ExPASy TrEMBL
Match: A0A5A7UNR2 (60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00250 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 8.9e-108
Identity = 203/206 (98.54%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG+Y+PIGLEKPSVELVKITEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVERANARHVGARLKKAAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. ExPASy TrEMBL
Match: A0A0A0KKX2 (60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 8.9e-108
Identity = 203/206 (98.54%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG+Y+PIGLEKPSVELVKITEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVERANARHVGARLKKAAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. ExPASy TrEMBL
Match: A0A1S3CTG8 (60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107
Identity = 202/206 (98.06%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG+Y+PIGLEKPSVELVK+TEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVERANARHVGARLKKAAEAEKEEKK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. ExPASy TrEMBL
Match: A0A6J1K811 (60S ribosomal protein L13 OS=Cucurbita maxima OX=3661 GN=LOC111490997 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.8e-105
Identity = 198/206 (96.12%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG+Y+PIGLEK  VELVK+TE+MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKAPVELVKVTEEMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           RVER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. ExPASy TrEMBL
Match: A0A6J1ETG8 (60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111435822 PE=3 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.4e-105
Identity = 198/206 (96.12%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG Y+ IGLEKPSVELVKITED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER NARHVGARLK+AAEAEKEEKK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. TAIR 10
Match: AT3G49010.1 (breast basic conserved 1 )

HSP 1 Score: 345.9 bits (886), Expect = 2.2e-95
Identity = 170/206 (82.52%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG YLPI  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. TAIR 10
Match: AT3G49010.2 (breast basic conserved 1 )

HSP 1 Score: 345.9 bits (886), Expect = 2.2e-95
Identity = 170/206 (82.52%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG YLPI  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. TAIR 10
Match: AT3G49010.3 (breast basic conserved 1 )

HSP 1 Score: 345.9 bits (886), Expect = 2.2e-95
Identity = 170/206 (82.52%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG YLPI  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. TAIR 10
Match: AT5G23900.1 (Ribosomal protein L13e family protein )

HSP 1 Score: 341.3 bits (874), Expect = 5.5e-94
Identity = 168/206 (81.55%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKK APTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELA ATQVQG Y+PI   K ++ELVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER NARH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of ClCG01G004870 vs. TAIR 10
Match: AT3G49010.4 (breast basic conserved 1 )

HSP 1 Score: 339.3 bits (869), Expect = 2.1e-93
Identity = 169/206 (82.04%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKTFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGAYLPIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRAR  KAGDSTPEELA ATQVQG YLPI  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRAR--KAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEEKK 207
           R+ER N RH GAR K+AAEAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 204

The following BLAST results are available for this feature:

BLAST of ClCG01G004870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143667.1	1.8e-107	98.54	60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protei...	[more]
XP_008467320.1	2.4e-107	98.06	PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo]	[more]
XP_038907267.1	1.7e-105	96.60	60S ribosomal protein L13-3-like [Benincasa hispida] >XP_038907268.1 60S ribosom...	[more]
XP_022995473.1	3.8e-105	96.12	60S ribosomal protein L13-3-like [Cucurbita maxima] >XP_023532397.1 60S ribosoma...	[more]
XP_022929155.1	5.0e-105	96.12	60S ribosomal protein L13-3-like [Cucurbita moschata] >KAG6579642.1 hypothetical...	[more]

BLAST of ClCG01G004870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41127	3.2e-94	82.52	60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1	[more]
Q9FF90	7.8e-93	81.55	60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1	[more]
P41128	3.3e-91	80.58	60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
P41129	4.3e-91	80.10	60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q9SMT4	2.0e-80	73.30	Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C P...	[more]

BLAST of ClCG01G004870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNR2	8.9e-108	98.54	60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0KKX2	8.9e-108	98.54	60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1	[more]
A0A1S3CTG8	1.2e-107	98.06	60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1	[more]
A0A6J1K811	1.8e-105	96.12	60S ribosomal protein L13 OS=Cucurbita maxima OX=3661 GN=LOC111490997 PE=3 SV=1	[more]
A0A6J1ETG8	2.4e-105	96.12	60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111435822 PE=3 SV=...	[more]

BLAST of ClCG01G004870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49010.1	2.2e-95	82.52	breast basic conserved 1	[more]
AT3G49010.2	2.2e-95	82.52	breast basic conserved 1	[more]
AT3G49010.3	2.2e-95	82.52	breast basic conserved 1	[more]
AT5G23900.1	5.5e-94	81.55	Ribosomal protein L13e family protein	[more]
AT3G49010.4	2.1e-93	82.04	breast basic conserved 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 6..185 e-value: 2.4E-78 score: 262.1
IPR001380	Ribosomal protein L13e	PANTHER	PTHR11722	60S RIBOSOMAL PROTEIN L13	coord: 2..206
IPR001380	Ribosomal protein L13e	HAMAP	MF_00499	Ribosomal_L13e	coord: 44..127 score: 21.771833
None	No IPR available	GENE3D	1.20.5.110		coord: 166..206 e-value: 1.7E-14 score: 55.5
None	No IPR available	PANTHER	PTHR11722:SF11	60S RIBOSOMAL PROTEIN L13	coord: 2..206
IPR018256	Ribosomal protein L13e, conserved site	PROSITE	PS01104	RIBOSOMAL_L13E	coord: 69..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G004870.1	ClCG01G004870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome