ClCG01G003440 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G003440
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionBnaA03g50020D protein
LocationCG_Chr01: 3578478 .. 3578806 (-)
RNA-Seq ExpressionClCG01G003440
SyntenyClCG01G003440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGAAGAAAGGGGTGGTTGCGCCGATGGCTTGATTGAAGGAAACCGGTAGGTAACGGAGAGAAGTGTTTCCGCAGACGACGGAGAAGCAGAAAATGGCGCTGAGGGCGAGAATTTTGAGAAATTGAGTTCGAGATTGGATTTGCTGGGTGGGTACGATTTTGAGGAAGAGGATAGAGAGGTAGCTGTAGAATGTACAGGAGAGCATATGGAGCATTGTGAGGAAGATGGGGAATCGGAAGCCATAGAAGCTGAGGAGGTACTTGTTGAGAAGGAGGACGCCGATGTTGGAGAGGTACCAGGAGAGGACGATCAGAGCCGTTGA

mRNA sequence

ATGGCGGTGAAGAAAGGGGTAACGGAGAGAAGTGTTTCCGCAGACGACGGAGAAGCAGAAAATGGCGCTGAGGGCGAGAATTTTGAGAAATTGAGTTCGAGATTGGATTTGCTGGGTGGGTACGATTTTGAGGAAGAGGATAGAGAGGTAGCTGTAGAATGTACAGGAGAGCATATGGAGCATTGTGAGGAAGATGGGGAATCGGAAGCCATAGAAGCTGAGGAGGTACTTGTTGAGAAGGAGGACGCCGATGTTGGAGAGGTACCAGGAGAGGACGATCAGAGCCGTTGA

Coding sequence (CDS)

ATGGCGGTGAAGAAAGGGGTAACGGAGAGAAGTGTTTCCGCAGACGACGGAGAAGCAGAAAATGGCGCTGAGGGCGAGAATTTTGAGAAATTGAGTTCGAGATTGGATTTGCTGGGTGGGTACGATTTTGAGGAAGAGGATAGAGAGGTAGCTGTAGAATGTACAGGAGAGCATATGGAGCATTGTGAGGAAGATGGGGAATCGGAAGCCATAGAAGCTGAGGAGGTACTTGTTGAGAAGGAGGACGCCGATGTTGGAGAGGTACCAGGAGAGGACGATCAGAGCCGTTGA

Protein sequence

MAVKKGVTERSVSADDGEAENGAEGENFEKLSSRLDLLGGYDFEEEDREVAVECTGEHMEHCEEDGESEAIEAEEVLVEKEDADVGEVPGEDDQSR
Homology
BLAST of ClCG01G003440 vs. NCBI nr
Match: RXH95401.1 (hypothetical protein DVH24_007901 [Malus domestica])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 0

Query: 7   VTERSVSADDGEAENGAEGENFEKLSSRLDLLGGYDFEEEDREVAVECTGEHMEHCEEDG 66
           V E  V+A+DGEAE+G E E+ EKL++  D+L  +  EE D +VAV   G+H+EHCE+DG
Sbjct: 56  VAEGGVAANDGEAEDGGECEDLEKLAAGEDVLTWHYLEEVDGDVAVGGAGDHVEHCEKDG 115

Query: 67  ESEAIEAEEVLVEKEDADVGEVPGEDDQSR 97
            +EA+EAEEVLVE+EDADV +VPG +++ R
Sbjct: 116 VAEAVEAEEVLVEEEDADVRQVPGCNNRRR 145

BLAST of ClCG01G003440 vs. NCBI nr
Match: KYP48720.1 (hypothetical protein KK1_029609, partial [Cajanus cajan])

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-06
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 7   VTERSVSADDGEAENGAEGENFEKLSSRLDLLGGYDFEEEDREVAVECTGEHMEHCEEDG 66
           V ER V+ DDG+AEN AEG + E+L +  + L G   E  D +VA E  G H+ H EE+G
Sbjct: 51  VAERDVAEDDGDAENEAEGGDLEELEAGAEGLHGNHLEPGDGDVAEEGAGCHVAHGEENG 110

Query: 67  ESEAIEAEEVLVEKEDADVGEVP 90
             EA+ AE+VLV+++  +VG VP
Sbjct: 111 VLEAVVAEQVLVQQQHPNVGGVP 133

BLAST of ClCG01G003440 vs. NCBI nr
Match: CAF2132240.1 (unnamed protein product [Brassica napus] >CDY39190.1 BnaA03g50020D [Brassica napus])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 7  VTERSVSADDGEAENGAEGENFEKLSSRLDLLGGYDFEEEDREVAVECTGEHMEHCEEDG 66
          VTERSV+A DGEAE+  E +N +KL++  D+L  +D  + D   AV   GE + H +ED 
Sbjct: 11 VTERSVAAHDGEAEDRRECKNLQKLTAGEDVLMEHDSGDVDHGGAVGGAGERVRHGQEDR 70

Query: 67 ESEAIEAEEVLVEKEDADVGEVPGED 93
           +EA+  EEVLV+++D+ VG  PG D
Sbjct: 71 VAEAVVEEEVLVQEKDSYVGPEPGGD 96

BLAST of ClCG01G003440 vs. NCBI nr
Match: KYP67713.1 (hypothetical protein KK1_024064, partial [Cajanus cajan])

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-05
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 5   KGVTERSVSADDGEAENGAEGENFEKLSSRLDLLGGYDFEEEDREVAVECTGEHMEHCEE 64
           + V +R V ADDGEAEN AE ++  +L      L   D  + D +VA      H+   EE
Sbjct: 49  RNVPKRDVPADDGEAENDAERDDLGELVPGAQGLERNDAGDGD-DVAENGAEHHVTRGEE 108

Query: 65  DGESEAIEAEEVLVEKEDADVGEVP 90
           DGE+EA+  E+VLVEKEDADVG VP
Sbjct: 109 DGEAEAVVGEQVLVEKEDADVGSVP 132

BLAST of ClCG01G003440 vs. NCBI nr
Match: ONK64274.1 (uncharacterized protein A4U43_C07F23960 [Asparagus officinalis])

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-04
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 0

Query: 7   VTERSVSADDGEAENGAEGENFEKLSSRLDLLGGYDFEEEDREVAVECTGEHMEHCEEDG 66
           V +R V AD   AE+ A+  + E+L  R D L   + E  D  VA E  G H+ H EE+ 
Sbjct: 18  VPQRDVPADHRSAEDEAQSSDLEELEPRSDGLHRDNLEPSDGYVAEEGAGGHVTHHEENW 77

Query: 67  ESEAIEAEEVLVEKEDADVGEVPGED 93
             EAI  EEVLVE+EDADVG V G D
Sbjct: 78  VLEAIIREEVLVEEEDADVGGVQGGD 103

BLAST of ClCG01G003440 vs. ExPASy TrEMBL
Match: A0A498JQ56 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_007901 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.9e-14
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 0

Query: 7   VTERSVSADDGEAENGAEGENFEKLSSRLDLLGGYDFEEEDREVAVECTGEHMEHCEEDG 66
           V E  V+A+DGEAE+G E E+ EKL++  D+L  +  EE D +VAV   G+H+EHCE+DG
Sbjct: 56  VAEGGVAANDGEAEDGGECEDLEKLAAGEDVLTWHYLEEVDGDVAVGGAGDHVEHCEKDG 115

Query: 67  ESEAIEAEEVLVEKEDADVGEVPGEDDQSR 97
            +EA+EAEEVLVE+EDADV +VPG +++ R
Sbjct: 116 VAEAVEAEEVLVEEEDADVRQVPGCNNRRR 145

BLAST of ClCG01G003440 vs. ExPASy TrEMBL
Match: T1MFN7 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 7   VTERSVSADDGEAENGAEGENFEKLSSRLDLLGGYDFEEEDREVAVECTGEHMEHCEEDG 66
           V ER V+ DDG AE+ AE  +  +L +R   L G+D E  D  V  E  G H+ H EEDG
Sbjct: 48  VAERDVAGDDGAAEDEAERGDLGELDARAHELHGHDPEPGDGGVGEERAGGHVAHGEEDG 107

Query: 67  ESEAIEAEEVLVEKEDADVGEVPGEDDQSR 97
             EA+ AEEVLVE+E ADVG VPG D+  R
Sbjct: 108 VLEAVVAEEVLVEQEHADVGGVPGGDEPHR 137

BLAST of ClCG01G003440 vs. ExPASy TrEMBL
Match: A0A2N9HFP8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38884 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 35 LDLLGGYDFEEEDREVAVECTGEHMEHCEEDGESEAIEAEEVLVEKEDADVGEVPGEDDQ 94
          +D+L   + EE D   A+   G+H+EHCEED  S  +EA+EVLVE+ED+DVGEVP  DDQ
Sbjct: 20 VDVLERNEIEEVDGGGAIGGAGDHVEHCEEDRVSVPVEAKEVLVEEEDSDVGEVPSRDDQ 79

Query: 95 SR 97
          SR
Sbjct: 80 SR 81

BLAST of ClCG01G003440 vs. ExPASy TrEMBL
Match: A0A151S1P4 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_029609 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 7   VTERSVSADDGEAENGAEGENFEKLSSRLDLLGGYDFEEEDREVAVECTGEHMEHCEEDG 66
           V ER V+ DDG+AEN AEG + E+L +  + L G   E  D +VA E  G H+ H EE+G
Sbjct: 51  VAERDVAEDDGDAENEAEGGDLEELEAGAEGLHGNHLEPGDGDVAEEGAGCHVAHGEENG 110

Query: 67  ESEAIEAEEVLVEKEDADVGEVP 90
             EA+ AE+VLV+++  +VG VP
Sbjct: 111 VLEAVVAEQVLVQQQHPNVGGVP 133

BLAST of ClCG01G003440 vs. ExPASy TrEMBL
Match: A0A078HL30 (BnaA03g50020D protein OS=Brassica napus OX=3708 GN=BnaA03g50020D PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.9e-06
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 7  VTERSVSADDGEAENGAEGENFEKLSSRLDLLGGYDFEEEDREVAVECTGEHMEHCEEDG 66
          VTERSV+A DGEAE+  E +N +KL++  D+L  +D  + D   AV   GE + H +ED 
Sbjct: 11 VTERSVAAHDGEAEDRRECKNLQKLTAGEDVLMEHDSGDVDHGGAVGGAGERVRHGQEDR 70

Query: 67 ESEAIEAEEVLVEKEDADVGEVPGED 93
           +EA+  EEVLV+++D+ VG  PG D
Sbjct: 71 VAEAVVEEEVLVQEKDSYVGPEPGGD 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RXH95401.11.2e-1355.56hypothetical protein DVH24_007901 [Malus domestica][more]
KYP48720.15.5e-0646.99hypothetical protein KK1_029609, partial [Cajanus cajan][more]
CAF2132240.11.2e-0546.51unnamed protein product [Brassica napus] >CDY39190.1 BnaA03g50020D [Brassica nap... [more]
KYP67713.14.7e-0548.24hypothetical protein KK1_024064, partial [Cajanus cajan][more]
ONK64274.15.2e-0447.67uncharacterized protein A4U43_C07F23960 [Asparagus officinalis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A498JQ565.9e-1455.56Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_007901 PE=4 SV=1[more]
T1MFN71.7e-0851.11Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1[more]
A0A2N9HFP81.6e-0656.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38884 PE=4 SV=1[more]
A0A151S1P42.7e-0646.99Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_029609 PE=4 S... [more]
A0A078HL305.9e-0646.51BnaA03g50020D protein OS=Brassica napus OX=3708 GN=BnaA03g50020D PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G003440.1ClCG01G003440.1mRNA