ClCG01G001340 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G001340
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Mitochondrial import inner membrane translocase subunit
Location	CG_Chr01: 1247894 .. 1251252 (+)
RNA-Seq Expression	ClCG01G001340
Synteny	ClCG01G001340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAATTGGCAAGGTAAAGGTTGAAGCACAGCAAAGGCGCGCCCTAATTGCATTGCCATAGCCATCGCGTTCGCCGCCCTTGAACACAAAATTCAGCTCTACGGCACTGCGCAAGCGAATACAGACAGGGGCAGTGGTTTATAGGGTTTTGCAAGTACCCAACAAATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGGTTCTACCTCTCCCTTTACTTTTTTTCTTTTCTTCCAAACTTGTTTGTCAAATTACTCATATCTTGTGCGGATGTATCTGGACTTCTTAGAGTAGTCGGTTTGATGAAGGCGTTTCAATATTGGGTGTTTTGTGACGGTTTAAATGTGAGGAATTAATTAATAAGTTCTGGTTTTGAAGTTTGGGTAGTGATAGGATGTCGCTTTTAAAGATGGTATGCCAGAATTAATCAATGCGAATTGTTGAGCCTATAGATTTTGGGGTATTCTATCACAACATCAAATGGAATCACTTAGGCCTAACCTTTTGGTTTTTTAGAACTGTGCTTGTTTTCTCACCATTATTTACCTTGATTTTCATATTTCTTAGGAAACATTTGAACTTAGCCAAATCCGAAAAACAAAATTAAGTTTTTCAAATGTATTTTTCTTTAGTTTTGATAACTTTGGCTTGAATTTTGGAAACCCAACTCATAGGTAGGAGTAGTAATATAACTTTAATTTTTAAAAATCAAATGGTTATTAAATGGCAATTTAAATTCTCTCTTGTCAGTTCTAGTTTGATTTTTTTTTCATTTCCTCATTATTATTATTATTATTATTATTATTTTTATTTTTATTTTTTGTTTTTTTTACTAATTGAAGATGTAGAAATCTAAAATTCAGGTGTGGAAGCTCTTTACTGATCGAGTGCTGTAGAAGAAAAATGTTTGATGTATGCTAACTTGTGTTGTAGGATTGATTGATTGATTTTTTTTTTCTCTGTTGATTTTGAATTGGGAGGGGAGGGCTAGAGGTAGTACTAGTAGGAGGAAGAAATTTTCCAAAAGAATTTTCTTGAACCTGGTTCTATAACATTAAGTTGTTGCCCGTGTGTGGTGGAGGACTCGTCCTTTGATTTATTCTCGCACTAGGTATCCAAAAACTATTCATAATGATCAGTACAGACGCTAGTTTTACTTGACTTTTGTGAAGATGTCTTGAGAAATAGGGGAGAAAAAATCAATTGTTCCTGTTGAGATTAACAGGAACGAATGGCTAGTAGGGGGCATTTTTATATTATTTTTTGCGTTTTAGAGGTTCTATACATACATTGCTTCTTGATGTTTTGACAACAATCGTAGTTGAATGAAAGATACTGAGGAAGGAATGATATAAAGGTTCATTGTTCAACCAATGGTCTTCAAAACAGCGTTTTATTATCTTTTCCACCTTTGTCTTGTACCACTTATCAGAAAACTGAATGCACTCCAAAATATGGAGCCAAGCGCTCTTAATTTGACCGTACTTTTCAACACAGTTCACCAGTCTTTCTCTTGCTACTTTTTTTGGAAGCTATCACCTTCCTCCACAAAGCCTTAGTTGAGCACTTCCAACCCCGCTTGGCCAAGAGAGCCCTATTTCTAGCTGCTAATCTTCCAATGCCCAAACCTCCAATTGAAGTGGGGAAGGACGTGATTGACCAATTTATGAGGTTGTTAATGAAATGAGGTGTACTCAATAAAATAAATTTTGGTTCAGGAAACTTCTTCTGGAGACAAGTCTCTTCTTTTAGGGAAATGGTGCGCGTGGGTAATAGGAAAATTTTTTATCCAATTTTTATTGCCTTATAAGTTGGTTGAGGATTGTCAAAGAAGGAAATCTGAAGGTTGAACAAACCAATAAGAAAGGGTGGGAGAGAGTCTCGTATGAGAAGTTTTATGAAGTAGACTTGAGGAGAAATGGGGCAGCTTTGATCTCAACTTTTTCTACCATACGATATAGTATTCAACGAGAAAGGTCTTTTCCATCCAGTATTCTCTTTTGAAACTTTTTTGTGATTATGATCTTGTACATTCCCATAAAAAATTATGATCTTGTACGTAGTGTGGCCTACTAGAATTCCTTTTTTAACCTTCGCCCTTTGGGACATTCATCTCCCAATTTTTGTATGGTCTCGCTCCATCAATATATTTCTCCATTTCTTCTAAAACTTAAAATCATACTATATGTTTTTTTTTTTTTACTCTGTTGATTACTTGATTCTCAGACTTTACTTTTTGTGAATTAAATTCTATAGTTTTATTTAGGGGATACATCTCAGGAGGTAGGACATTCAAGATATTGTCCTTGCTGTGTGTTCTTTAAGACTGTCTTGAGGCTTTTTGGGGTACACACTCATGGGTAATGTGGTGTTGTGTTCACTTGTTCCTTTGCAGTTTGCACCTTGTGTGTGTTTAGTAATATCAAATTTCTTGATAATAATTTCTTATCTTCTTGATATGAAAAAACCCAAAAGACAGTTTTAAATTAAATTCTTGATATACATATATATATTTGGGATAATTTCAAATTGATCATTCATATTATCTTGCACTGCGGATGTTCCTTGTAGTAGCATCATGGTTCTTGATCATTGTTGCGGTTAATGAAATGAAAGGGTAGACTTTCCAACCAAAAGATTCACAAGCTTACTTGAGTAGGATTTGTTCTGTAGGTTGTACAACTGTGTCCTTGAGTTCTAAAGATTCACGAGCCAATCTCTTTCTCTCTCTGACCTGGGATTATATATTTTTTCTCTTTCTCTTTTCATTTAATTGATTATATTTATTATTTTCCGTCGATTTGGCCAATGTTGATATATTGCACTTCTCTTGCACAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACCAAGCCAGGGTCAAGCCTAAGTGGAAGTGAGGGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAGGCCACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTGAATTCACAGGTTTTCCTGAGACATTATGCCGCCGAGGTATCTTCAGCAACCTACATTTTGTTCGATATTTATTTTCCAGCGCTAAAATCTTTCTTGAGGAGACATGCTTTTGATTTGTGCCCCATAGATAATATTGGTATCATGTGCCCGATTCGCTTACATGTGAACTTTGGGTCAATTAAACTCTCATTTCTTCTGATTTAACATGCGTCAATTGGTGTTATTACCATGTGTGGATTGAACCAAGCTGTTACTATTGGTTGGATAGAATAGAAGAATGCTACACTGATAG

mRNA sequence

GTGAATTGGCAAGGTAAAGGTTGAAGCACAGCAAAGGCGCGCCCTAATTGCATTGCCATAGCCATCGCGTTCGCCGCCCTTGAACACAAAATTCAGCTCTACGGCACTGCGCAAGCGAATACAGACAGGGGCAGTGGTTTATAGGGTTTTGCAAGTACCCAACAAATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACCAAGCCAGGGTCAAGCCTAAGTGGAAGTGAGGGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAGGCCACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTGAATTCACAGGTTTTCCTGAGACATTATGCCGCCGAGGTATCTTCAGCAACCTACATTTTGTTCGATATTTATTTTCCAGCGCTAAAATCTTTCTTGAGGAGACATGCTTTTGATTTGTGCCCCATAGATAATATTGGTATCATGTGCCCGATTCGCTTACATGTGAACTTTGGGTCAATTAAACTCTCATTTCTTCTGATTTAACATGCGTCAATTGGTGTTATTACCATGTGTGGATTGAACCAAGCTGTTACTATTGGTTGGATAGAATAGAAGAATGCTACACTGATAG

Coding sequence (CDS)

ATGGATCCATTTTCATCACCTTCAACCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACCAAGCCAGGGTCAAGCCTAAGTGGAAGTGAGGGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAGGCCACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTGA

Protein sequence

MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRALFKTPH

Homology

[Close]

BLAST of ClCG01G001340 vs. NCBI nr
Match: XP_038906948.1 (mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 6.5e-38
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSSPS+GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKTPH 88
           SCISRCMERYIEATSIVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of ClCG01G001340 vs. NCBI nr
Match: XP_004145880.1 (mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus] >XP_008437464.1 PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumis melo] >KGN49963.1 hypothetical protein Csa_000141 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-37
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSSPS+GSS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKTPH 88
           SCISRCMERYIEATSIVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of ClCG01G001340 vs. NCBI nr
Match: XP_022929052.1 (mitochondrial import inner membrane translocase subunit TIM13-like isoform X6 [Cucurbita moschata] >XP_022970119.1 mitochondrial import inner membrane translocase subunit TIM13 [Cucurbita maxima] >KAG6579600.1 Mitochondrial import inner membrane translocase subunit TIM13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.7 bits (413), Expect = 7.1e-37
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKTPH 88
           SCISRCMERYIEAT IVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATGIVSRALFKTPH 87

[Close]

BLAST of ClCG01G001340 vs. NCBI nr
Match: XP_022159838.1 (mitochondrial import inner membrane translocase subunit Tim13 [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 4.6e-36
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSSPS+G SSQFSA+EF+DQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKTPH 88
           SCISRCMERYIEATSIVS+ALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSKALFKTPH 87

[Close]

BLAST of ClCG01G001340 vs. NCBI nr
Match: XP_023520535.1 (mitochondrial import inner membrane translocase subunit Tim13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.6 bits (405), Expect = 6.0e-36
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCF KCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFAKCITKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKTPH 88
           SCISRCMERYIEAT IVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATGIVSRALFKTPH 87

[Close]

BLAST of ClCG01G001340 vs. ExPASy Swiss-Prot
Match: Q9XH48 (Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis thaliana OX=3702 GN=TIM13 PE=1 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 6.5e-25
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1  MDPFSSPST-GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MD +SSP   GS S  S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GS
Sbjct: 1  MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 61 EGSCISRCMERYIEATSIVSRALF 84
          E SCISRC+ERY+EAT+I+SR+LF
Sbjct: 61 ESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of ClCG01G001340 vs. ExPASy Swiss-Prot
Match: Q9XGY5 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica OX=39947 GN=TIM13 PE=3 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-23
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSS S+GS     A    DQ+K QLAQAYA+EFLET+  KCF KC+TKPGSSLSGSE
Sbjct: 1  MDSFSS-SSGSPPNTEA--LMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKT 86
           SCISRC++RYIEAT IVSRALF +
Sbjct: 61 SSCISRCVDRYIEATGIVSRALFSS 82

[Close]

BLAST of ClCG01G001340 vs. ExPASy Swiss-Prot
Match: Q6DGJ3 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio OX=7955 GN=timm13 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-12
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1  MDPFSSP-STGSSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSG 60
          M+ F S  S+GSSS +       +Q+K Q+A A A+E L+ +  KCF KCI KPGS+L  
Sbjct: 1  MEGFGSDFSSGSSSGKMDTGTIMEQVKVQIAVANAQELLQRMTDKCFKKCIGKPGSTLDN 60

Query: 61 SEGSCISRCMERYIEATSIVSRA 82
          SE  CI+ CM+RY++A + VSRA
Sbjct: 61 SEQKCIAMCMDRYMDAWNTVSRA 83

[Close]

BLAST of ClCG01G001340 vs. ExPASy Swiss-Prot
Match: Q8AVK1 (Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevis OX=8355 GN=timm13-b PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.3e-12
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 1  MDPFSSPST---GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLS 60
          MD F S  +    SS +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL 
Sbjct: 1  MDGFGSDFSVGGSSSGKVDTGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLD 60

Query: 61 GSEGSCISRCMERYIEATSIVSRA 82
           SE  C++ CM+RY++A +IVSRA
Sbjct: 61 NSEQKCVAMCMDRYMDAWNIVSRA 84

[Close]

BLAST of ClCG01G001340 vs. ExPASy Swiss-Prot
Match: P62075 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Mus musculus OX=10090 GN=Timm13 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 22 DQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSEGSCISRCMERYIEATSIVSRA 81
          +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  CI+ CM+RY++A + VSRA
Sbjct: 24 EQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCMDRYMDAWNTVSRA 83

[Close]

BLAST of ClCG01G001340 vs. ExPASy TrEMBL
Match: A0A0A0KK66 (Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=3659 GN=Csa_5G146860 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-37
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSSPS+GSS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKTPH 88
           SCISRCMERYIEATSIVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of ClCG01G001340 vs. ExPASy TrEMBL
Match: A0A1S3AUN2 (Mitochondrial import inner membrane translocase subunit OS=Cucumis melo OX=3656 GN=LOC103482878 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-37
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSSPS+GSS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKTPH 88
           SCISRCMERYIEATSIVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of ClCG01G001340 vs. ExPASy TrEMBL
Match: A0A6J1I4K9 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469108 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKTPH 88
           SCISRCMERYIEAT IVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATGIVSRALFKTPH 87

[Close]

BLAST of ClCG01G001340 vs. ExPASy TrEMBL
Match: A0A6J1ELP2 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX=3662 GN=LOC111435758 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSSPS+GSSSQFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKTPH 88
           SCISRCMERYIEAT IVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATGIVSRALFKTPH 87

[Close]

BLAST of ClCG01G001340 vs. ExPASy TrEMBL
Match: A0A6J1DZZ6 (Mitochondrial import inner membrane translocase subunit OS=Momordica charantia OX=3673 GN=LOC111026139 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MDPFSSPSTGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MD FSSPS+G SSQFSA+EF+DQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 GSCISRCMERYIEATSIVSRALFKTPH 88
           SCISRCMERYIEATSIVS+ALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSKALFKTPH 87

[Close]

BLAST of ClCG01G001340 vs. TAIR 10
Match: AT1G61570.1 (translocase of the inner mitochondrial membrane 13 )

HSP 1 Score: 114.4 bits (285), Expect = 4.6e-26
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1  MDPFSSPST-GSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MD +SSP   GS S  S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GS
Sbjct: 1  MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 61 EGSCISRCMERYIEATSIVSRALF 84
          E SCISRC+ERY+EAT+I+SR+LF
Sbjct: 61 ESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of ClCG01G001340 vs. TAIR 10
Match: AT5G50810.1 (translocase inner membrane subunit 8 )

HSP 1 Score: 47.8 bits (112), Expect = 5.3e-06
Identity = 21/58 (36.21%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 24 LKTQLAQAYAEEFLETLRVKCFDKCITK-PGSSLSGSEGSCISRCMERYIEATSIVSR 81
          L  +  +A   E +  +   C+DKCIT  PGS  S SE SC++ C +RY++ + I+ +
Sbjct: 15 LAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMIIMK 72

The following BLAST results are available for this feature:

BLAST of ClCG01G001340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906948.1	6.5e-38	96.55	mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida...	[more]
XP_004145880.1	2.5e-37	95.40	mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus] ...	[more]
XP_022929052.1	7.1e-37	94.25	mitochondrial import inner membrane translocase subunit TIM13-like isoform X6 [C...	[more]
XP_022159838.1	4.6e-36	91.95	mitochondrial import inner membrane translocase subunit Tim13 [Momordica charant...	[more]
XP_023520535.1	6.0e-36	93.10	mitochondrial import inner membrane translocase subunit Tim13 [Cucurbita pepo su...	[more]

BLAST of ClCG01G001340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XH48	6.5e-25	67.86	Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis tha...	[more]
Q9XGY5	4.7e-23	69.41	Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa su...	[more]
Q6DGJ3	4.8e-12	48.19	Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio OX=...	[more]
Q8AVK1	6.3e-12	45.24	Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevi...	[more]
P62075	3.1e-11	53.33	Mitochondrial import inner membrane translocase subunit Tim13 OS=Mus musculus OX...	[more]

BLAST of ClCG01G001340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK66	1.2e-37	95.40	Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=36...	[more]
A0A1S3AUN2	1.2e-37	95.40	Mitochondrial import inner membrane translocase subunit OS=Cucumis melo OX=3656 ...	[more]
A0A6J1I4K9	3.5e-37	94.25	Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3...	[more]
A0A6J1ELP2	3.5e-37	94.25	Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX...	[more]
A0A6J1DZZ6	2.2e-36	91.95	Mitochondrial import inner membrane translocase subunit OS=Momordica charantia O...	[more]

BLAST of ClCG01G001340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61570.1	4.6e-26	67.86	translocase of the inner mitochondrial membrane 13	[more]
AT5G50810.1	5.3e-06	36.21	translocase inner membrane subunit 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10-like	PFAM	PF02953	zf-Tim10_DDP	coord: 23..82 e-value: 1.1E-19 score: 69.7
IPR035427	Tim10-like domain superfamily	GENE3D	1.10.287.810	Mitochondrial import inner membrane translocase subunit tim13 like domains	coord: 29..86 e-value: 9.0E-19 score: 68.8
IPR035427	Tim10-like domain superfamily	SUPERFAMILY	144122	Tim10-like	coord: 34..84
IPR039238	Mitochondrial import inner membrane translocase subunit Tim8/13	PANTHER	PTHR19338	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG	coord: 5..87
None	No IPR available	PANTHER	PTHR19338:SF14	OSJNBA0064M23.16 PROTEIN	coord: 5..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G001340.1	ClCG01G001340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein insertion into mitochondrial inner membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0042719	mitochondrial intermembrane space protein transporter complex
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0046872	metal ion binding