ClCG01G000260 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G000260
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 184914 .. 187113 (-)
RNA-Seq ExpressionClCG01G000260
SyntenyClCG01G000260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGAGCGAGAATCGGAGAGTTTCGAACCTTGAAGCTCGGGCACGGACTGGGTCTGGCAGAAGAGCTCAATCGTAGCATTGGACTCAGCGATGGAGCGAAGGGACTTGAGGAGGCTTCGAAGACCACAGACTCGGAGAAAGCTAAACTCGGCGCTGGCGTCTCTCAGGCCTGTTCTGAGAGCAAAAGTAACCTCGCGGCAAAGCCTCTGACGATTCAGAGAATTGACCAATTCCCCGACGGCGGAGGATGTTGCAGACGCGGATTTGTCGTCCGGCGAAGATTCGGCGGAGGGATTCGCCGTGATTCCGTCGGTCCACAATGGCTTCTTCAGATACATCTCCGATTAGGGCGCGTGGTGGCTGGTGGAAGGGTCCGGCAATAAGAGAGAGTTTGTGGATCGATGAGACGGCGGATTTTGTTCTTCGTTACGCGAAGGCAATCGGAAACGACTTCAGGAATGACTCCACTGCAATAATGCAATTACTTAATTAAGATTAACCTCCACAATTTTTTTAAAATTATTATTTAGGGGTGAAACTTGCAACACCACCAAATTTGAGGGTAAAATTGCCCATAAAATAGAATTTAATAAAATAAAAAATTTAGGACAAATATCAATTTATATTCCTACAAGGAAAAATTGTATGAATTTAAATCTTAAACTAATAATGATATATAAACTTCTGAGTGTGTCAATTTAAACATCAAGTTAATAATTGTATCAATTAAAATAATTATTTTTTTTTATAAATAATATCAATTTTTATAAGTGTATCAAATTAAACTTTCCATTATAAATTTTATCAATTTTCAATCCCACTTTCATTTTAACTCTATCTAAAAATAAATAATACACATTAAATTATTGATGTTACATTAAAAGCTTTTTCAAAGCATTAAAGTCATGTTATAACGTGTTCAACTTCTAAACATATAGGAATAAAAACAGTTTGTTAGCTGGACGCTATTGATATTTACATCAAATCAATCAAAATCGGTAAGAACCACCATAATAGTAGTTGACAAAAAATAAAAAATAAAAAATAAAAATAAACATAGTTCAATCGTACAAATTCCTTTTTTTAACCTTCAAACCCCACGTCATGCATTATCCTTGGGATATGTATTGGGAAGATATTAATCAACGAGCCCATTTGGTGGCAAGTCTCCTATCCATGCCCTTTGTTTAATCAAATAAGGTAAAGGATTCCAACTTATCAAATAAAGTAATAATTCATTTAATATCATATTAAAGCAGAAAGCATCGAGGTCTAACCCTCCCATGTAATCTCATCCCCAATTGATAATTGTGCACTTAGATCTTGAGTTAAATTGTCATGCCAAACAAACAACGAAACCGATTAACTATAACTAAATCAATGAATATAATGTGAGACCGTTGAACTATGCTTTAGTTTGAACATCGACTTTCAAGTATAGTGGTAGTTTGACATTAACATCTTTGACTATATCTATATTTCTGCTCAAACATAACCTGCAAAGCTTGCACAATATTAGTATATAAAAAATGAACAAAAAAAAAAAATTAAAGTTTTGAACAGAAAGGAAAGTACGATGATATGATCTAGGTGCTGATAAGCAACTGCTTTCTAATTCCAAGTGGTACTGTAAGCACCTTCAGAGGCACAGAGCATCTATTTGATTTTTCCATTATTAAAAAAAAAAAAACTAAAGCGAACTTAGTTCGGGAATAATTGACAAAACCTTTCATCCTAGAGGTGGGAGGAGGTTCGAATCTCCCAACCTTCTAGTACTCAAAATAAATAAATAAATAAATAAGTCTTAGTTGAAGATTTAAGCTGGTGGTTTTATGAGTTTTCGAACCTAACCTCGACTATTGTCATTCATTATGAGAGCTCCTGCAGAGCTTAAGTTCACACTGATATGAAGATAATGCTATAAATATTAAAGATGGTATGCTTTTTTCCAAGTGCATAAGCGAGAGACTGAGTTCAGATATGGGATGCAGAGTTGCAGTTCTCATAATAAGGAAGAATTGGAATTTTGCTTACTGCAGTGCCACGCTACAAAGCAGTCCATCAGCTTTCGAAGATGGAGTTGAAGATGACCCCGAGCGCTGGCTTTTGTGTTGTGGTACTCCCATTTCTGCTTCCAAGCAGAGTTACTGCATGCCTGCACTGTCATTCATAATAGGAAGACCTTCTCTGGTCTAA

mRNA sequence

ATGCAAGGAGCGAGAATCGGAGAGTTTCGAACCTTGAAGCTCGGGCACGGACTGGGTCTGGCAGAAGAGCTCAATCGTAGCATTGGACTCAGCGATGGAGCGAAGGGACTTGAGGAGGCTTCGAAGACCACAGACTCGGAGAAAGCTAAACTCGGCGCTGGCGTCTCTCAGGCCTGTTCTGAGAGCAAAAGTAACCTCGCGGCAAAGCCTCTGACGATTCAGAGAATTGACCAATTCCCCGACGGCGGAGGATGTTGCAGACGCGGATTTGTCGTCCGGCGAAGATTCGGCGGAGGGATTCGCCGTGATTCCGTCGGTCCACAATGGCTTCTTCAGATACATCTCCGATTAGGGCGCGTGGTGGCTGGTGGAAGGTTTGAACATCGACTTTCAAGTGCTGATAAGCAACTGCTTTCTAATTCCAAGTGGTACTATGGTATGCTTTTTTCCAAGTGCATAAGCGAGAGACTGAGTTCAGATATGGGATGCAGAGTTGCAGTTCTCATAATAAGGAAGAATTGGAATTTTGCTTACTGCAGTGCCACGCTACAAAGCAGTCCATCAGCTTTCGAAGATGGAGTTGAAGATGACCCCGAGCGCTGGCTTTTGTGTTGTGGTACTCCCATTTCTGCTTCCAAGCAGAGTTACTGCATGCCTGCACTGTCATTCATAATAGGAAGACCTTCTCTGGTCTAA

Coding sequence (CDS)

ATGCAAGGAGCGAGAATCGGAGAGTTTCGAACCTTGAAGCTCGGGCACGGACTGGGTCTGGCAGAAGAGCTCAATCGTAGCATTGGACTCAGCGATGGAGCGAAGGGACTTGAGGAGGCTTCGAAGACCACAGACTCGGAGAAAGCTAAACTCGGCGCTGGCGTCTCTCAGGCCTGTTCTGAGAGCAAAAGTAACCTCGCGGCAAAGCCTCTGACGATTCAGAGAATTGACCAATTCCCCGACGGCGGAGGATGTTGCAGACGCGGATTTGTCGTCCGGCGAAGATTCGGCGGAGGGATTCGCCGTGATTCCGTCGGTCCACAATGGCTTCTTCAGATACATCTCCGATTAGGGCGCGTGGTGGCTGGTGGAAGGTTTGAACATCGACTTTCAAGTGCTGATAAGCAACTGCTTTCTAATTCCAAGTGGTACTATGGTATGCTTTTTTCCAAGTGCATAAGCGAGAGACTGAGTTCAGATATGGGATGCAGAGTTGCAGTTCTCATAATAAGGAAGAATTGGAATTTTGCTTACTGCAGTGCCACGCTACAAAGCAGTCCATCAGCTTTCGAAGATGGAGTTGAAGATGACCCCGAGCGCTGGCTTTTGTGTTGTGGTACTCCCATTTCTGCTTCCAAGCAGAGTTACTGCATGCCTGCACTGTCATTCATAATAGGAAGACCTTCTCTGGTCTAA

Protein sequence

MQGARIGEFRTLKLGHGLGLAEELNRSIGLSDGAKGLEEASKTTDSEKAKLGAGVSQACSESKSNLAAKPLTIQRIDQFPDGGGCCRRGFVVRRRFGGGIRRDSVGPQWLLQIHLRLGRVVAGGRFEHRLSSADKQLLSNSKWYYGMLFSKCISERLSSDMGCRVAVLIIRKNWNFAYCSATLQSSPSAFEDGVEDDPERWLLCCGTPISASKQSYCMPALSFIIGRPSLV
Homology
[Close]
BLAST of ClCG01G000260 vs. NCBI nr
Match: KGN49845.1 (hypothetical protein Csa_000580 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-10
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 155 ERLSSDMGCRVAVLIIRKNWNFAYCSA-TLQSSPSAFEDGVEDDPERWLLCCGTPISASK 214
           ERL+SD+GC  AV + ++   FAYC    LQ S  A EDGVEDDP+ WLLC GTP SA K
Sbjct: 42  ERLNSDVGCTAAVFMNKEELKFAYCRCQKLQCSSLANEDGVEDDPKHWLLCYGTPFSAFK 101

Query: 215 QS 216
           QS
Sbjct: 102 QS 103

[Close]
BLAST of ClCG01G000260 vs. ExPASy TrEMBL
Match: A0A0A0KJE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139230 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-10
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 155 ERLSSDMGCRVAVLIIRKNWNFAYCSA-TLQSSPSAFEDGVEDDPERWLLCCGTPISASK 214
           ERL+SD+GC  AV + ++   FAYC    LQ S  A EDGVEDDP+ WLLC GTP SA K
Sbjct: 42  ERLNSDVGCTAAVFMNKEELKFAYCRCQKLQCSSLANEDGVEDDPKHWLLCYGTPFSAFK 101

Query: 215 QS 216
           QS
Sbjct: 102 QS 103

The following BLAST results are available for this feature:
BLAST of ClCG01G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49845.14.0e-1059.68hypothetical protein Csa_000580 [Cucumis sativus][more]
BLAST of ClCG01G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG01G000260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJE31.9e-1059.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139230 PE=4 SV=1[more]
BLAST of ClCG01G000260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G000260.2ClCG01G000260.2mRNA