ChyUNG236600 (gene) Cucumber (hystrix) v1

Overview
NameChyUNG236600
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionCytochrome b559 subunit alpha
Locationscaffold57_size79085: 45606 .. 51115 (-)
RNA-Seq ExpressionChyUNG236600
SyntenyChyUNG236600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCAAATCGCCCGCCCTTCGGGGATGCCCTCAGCGTCGAGGAACATGTACTAGGGTGTATGTGCGACTCGTTTAGACCATGGACCGGGACAAAAGAAAGTACAAAATTTTTCCCGTATCAGTGATAAGTACCAGTGACTAGGATAGAATGAATGGAAGAACTCCGTTCACTACCGAAAAAAATAAACAAAGATTTATCGTATCCTTTTATTGTGTATCAAATTTATGGTTTCTATTGGTGCAAATCCAATCATCTCAATTTTCAATTTTAGATGATAAAGAATTCCCCATTGGTAACAAATGCTTATCCATTAAGCAGAGGAAATCCTATTTAACAGAAGGATTATGGCCTTATTCTTCCAAGAACGGACTAAGAGGGTCAGCTACCCAACTAATCTTCATAATTAAATACCGTTACTGTATAGGTAGATCTCGTTGTGAAAGACCGATTACTAGATAATTCATGGGTAGAGCCAAAGAGGGTGACCTGTACAAGTTAACAATAACATTGATGAAATAAAAGAAGGAGCTCCGGTGTATAGAGAGGACCTCACCGTTTAAGAAGTAACCATAGAAACGAAGGAACCCACTATTTCTTTATCCATTTCTATTTTGATTTATTTACTCTATGTTTGTTTTTGTTTTTTCAAAATACTATTTCGTATTTTGGGGTGATTAGAACAAAAAAAGAAATCGTGGTCGGGAAGGTTATAGTAGCAAAAGCCATTGGAATTTTTATTTTATACATTGGAAAAATACGTTTGGTTATTAATAGACTAGGAAAGGAGAAAGGAATAACTGAAAGAAAGGAAATCAATTCGTTATTCATCAAAGTTTCATTTATTCAATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAATGTAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATAAAATACGAAGATTGGAAAGAATCCAGCGGATTGCTTAAAATGGAGTTCTCTGGAGAATGAACTCCGAGAAGGTAGAGTAGAAATTAGTATGATAAAATGAGTAGAAATTAGTATGATAAAATATCATAAAGTGGTCAAAATGAACAAATATGTTCAATAAAAAAAAACGATTTATTCTTCTTCCACTATTCTTTCTTTTTCTTACGACACGACAATCGAATCTATATTTTCGGATTTTTCGAACAAAGCATCAATCTGCGGTTGAGTTTGGATTAGAATTTTAATTCAATTAAAGAGTAAGCTAAGCCTATTTATTCCTGGTTCTAAGACCAATAGTTCTAGGAGTCGACTCGCTTCTTTCAAATTGTTTATCATTTTTATCATTATTAAGAAAAGGTAACAAAGATAAAATACGAGCTTGTTTTATAGCAATAGTAATTAAGCGTTGCTGTTTTAAGGTCAATCTATTTACCCGTCTAGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTCTATAATCAATTCGATCCCCCGATGGAATCGGGGGCAAACGCCTACGAAAAGATCGTTTGGATTTAAGAAAGAGTCGCTTGGATTTATCCATGGTTTTTTTATTCCTTATCCCGAAAATCCTATTTCTTAATTCTAAATCATTTTAGATCCGATCGAAATAGGATTTGGTTTGTTTATATTGAAATCTAAAATATGTCTAATATATGTAATTTTTCATCTTCCTTGGATTGGAAAAGGGTGAGACACAGCCGATCGGTTCGATCTATTTCTTTATCTCCCCATGAATCGTATGTTTGTAACACCGGGGACAGAATTTTCTCAATTCCAATCGACTAGGCGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAATCCCTATTGATTCCTTATTAACACCGTTTCGAACACAACGAGTACATTCCAAAATAACTGTTACTCGGGCATCTTTACCCTTGGCCATGAACCTCCCTTGGATTTTTGATTCACGCAACTCTTCCATTTTCCGATCCAAAATGAAGAAAAAAAAAGAAAAATTGGTAACTCGAAATAAAATTATGAAAGATTTCGTTACAATCAAATATTAAAATATAGTAATACAAGGATTTCTAAATTTAGAATCACAGTACAGTTTTTCATTTAAGTATTTTCTATGATATTGTTGCCTTAGCCATCACATTTTCATTTTCGTTCTCACTCTTTTATTAATTCAATTTGAACCCGGCGCCGGGTCCGAGTTTGACTGAGGTTGAATCTATTTTGATTCTTTCTAACTTATTCTAAGTCTAAAAACTCTAAAAAAAAGAAGGGGAAGGGGATTAGTCAAAGATATTTGATTGTTTTTCTAATCTTCTTCACCCCTTCCCAAGTCAATAACTAGAATGAAAAAAATGGGAATACCAACGCATCCGGGAATAAACGATTGATCTCGATTAATAGACCCGCTAAAGCCCCGAACCATATAGTACTTACTACCGGTGCCACGGAGAGATATGTTTTTAGATCTCGCATTGAAAACCCTCCTACTTTATAGTAATTTGTAATACATAATGATAGTAATTTGTAATACATACTGGTATTACATACCATCAAATTTATATATAGTTAATAACCGCTTGTATTGTCCGCGGAATTCCTAATTCAAATTGAAATGTACAACAGTTCAATTCGGTAGATATTCCCTTTTTTATTAAAAAAAATATGTAGCTTTCCGCCCCACCCCAAATATTCATTTTTCTTTACGGCGGATTTCCTATTTATTATTTCATACGTATATAAGTCTTTTAATTATATTTTATATATGATATGAGACAAAAAAGAAGAAATGGCAAGATAATTTGTGTATACCAATGGAGGAAATAAATAAAAAATGTGGAAAACAAGACAGGGATTCTCTACAATAACACTGTAGACCAATTGAAAGGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAATCCTGTCATCCCTACCTATTACTTATCTTCTGAACAGTAACGAGGAATCAATTGAGATCCATAAAAATTGAACATACATATATCGAATCAATCTTTTTTTGTTTAATTTTATGATATTCTATATGATAATATATGTATGGAAGATATATTCGGGTTGCATTTAGTTTGATAATAAAACGCTCTTAGTTCAGTTCGGTAGAACGCGGGTCTCCAAAACCCGATGTCGTAGGTTCAAATCCTATAGAGCGTGATTCGATTCTTGTTTTGTTAGATCAAAATTATACTGAAATAATTCAACAGAAATCAAAATTCGACCTCCTATAAAGCAAAGTAGGAGGTCAATCAAAAAAAAAGAACTGTTAATTAATCAAAGGTCCAACTGATCCCCCCGTCTGTATTGTAAATATGCGGTCACAAATAATCCAGCCAAAGTAATAGGAATTAGACCTAATACGATTCCAAATAAAAAAACTTCAATCATTTCAATTTAGTTGAACGAGGAAAAGGAGAGGTAATATCTATCCTTAAAAAATTAATCGGTATTGCCCATGAATCTCAATGACCAAGAATTGGAAATTGAATTGACAAGGTAAAGAACTCTACAATATATAGAATATATTGAATAACACCGAAATCTTTCTTTTTTTTAATTGTGCATTCAATTAATTTTAATCAAATAAGTCTTATCTTGTTCAGACCGATAAATAGAGCTGAGGTTATAGTTAAAACTGCTAGTAGAAAACCGAAATAACTAGTGATAGTAAGCATGACGAGGCTAAATGAAATACGTTATTTTTATCCATATGTTTATAAAGCACTTCCCTAAGTTTCTATTTTTGAAAGATACGCGGATGGATAAGTAAAAATACCAATTGAAAGAATATATTCAATTGAAAGTTTTTGATTCATCTATTATTATGATTATAGATGCTACTAACAAAAATCTTGTGACATAGGTAAGAAATCAATTCATCATCTGTCTCTCTATCCCGCAATTCGGAATCAAGGGATTCATTGGACAACTCTTGAGTTGTCAAAACAAATATTCTTATTATAAACAATTTATAAACAATAATTTAATATATAAATCTAGTAAATATATAAATCTATTAATATTAAATGGATTCTAAATAATTAGAAAAAAAGAAAAAATAATAAATAAACTATGTTGTGTAACTTGATTCCAAAAATGAAATGCTCTTTGAATCGATGAAGAATGAATGACCTTATAATGCCCTTTATTTATTAAATTGTATTCCCACTAATTAGATTTTCTGTAGTGGGTTCATTCCCATAAAATATTTTTAAAAAAGAAAAAAGTATCGCACGATCAGATCACTCGAAACTAGGTTCTCCATTTATTCTTTCCATATTATATTAAAAAAATTCTTCTAATTAGTTGAAGAACAATCCTTTGAGTCTAATATAAAACAATAATGCGTGCATTACGAATATTTATTATTATTCTATTCGTTGTTCTGTTTCGTTCATCGAATCCTATGTACTACAGTTACTTGTTACTGGACAACTAACCAATTCCTTAAAAAAAGAAAAAAGATTCAAACTAAAATATAACTACAAACACAAAAGAAATATTTCTTGATTTCACGTCTAATTTAATTGAATTTTGGGACTATTAGAATCTGCTTCCTGAATTATTATAAATCAACCAGTTGGATTCACATTTTACCCAATCTTCGCTTTCTAGCCCGAAGCCAATAACCGAGAGAATCCTTAATACTACAGACAGGCATTTTCAGAATTTTCTATTGAATGAATGGTACATGATTCTACATCGACAAGCACCAAGAAAAGAAGAAACAAATTATATTATTTAGTGCTTCATTTTTATACTTATTGTGAAATTGCGTTGCTGCGTGAGAAGAAGGATAGCTATACTGATTCGGTATACTCTAAAAACACCCTCGGTACAATATTGACGATCTTACAAAGATCGAATTTCAGTTAATTTCCATTTACTGATCTCATCTTTTACGGAATCGATCCCCCTTTTGACTGTACAAGAATATGTGGAGCTCGGCATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATTCGTCAGTACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAG

mRNA sequence

ATGTCACCAAATCGCCCGCCCTTCGGGGATGCCCTCAGCGTCGAGGAACATGTACTAGGGTTTAATTTCCATTTACTGATCTCATCTTTTACGGAATCGATCCCCCTTTTGACTGTACAAGAATATGTGGAGCTCGGCATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATTCGTCAGTACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAG

Coding sequence (CDS)

ATGTCACCAAATCGCCCGCCCTTCGGGGATGCCCTCAGCGTCGAGGAACATGTACTAGGGTTTAATTTCCATTTACTGATCTCATCTTTTACGGAATCGATCCCCCTTTTGACTGTACAAGAATATGTGGAGCTCGGCATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATTCGTCAGTACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAG

Protein sequence

MSPNRPPFGDALSVEEHVLGFNFHLLISSFTESIPLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF*
Homology
[Close]
BLAST of ChyUNG236600 vs. ExPASy Swiss-Prot
Match: Q70XY9 (Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 47  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 106
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 107 QGIPLITGRFDSLEQLDEFSRSF 130
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61  QGIPLITGRFDSLEQLDEFSRSF 83

[Close]
BLAST of ChyUNG236600 vs. ExPASy Swiss-Prot
Match: P56779 (Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 47  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 106
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 107 QGIPLITGRFDSLEQLDEFSRSF 130
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61  QGIPLITGRFDSLEQLDEFSRSF 83

[Close]
BLAST of ChyUNG236600 vs. ExPASy Swiss-Prot
Match: P59702 (Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 47  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 106
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 107 QGIPLITGRFDSLEQLDEFSRSF 130
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61  QGIPLITGRFDSLEQLDEFSRSF 83

[Close]
BLAST of ChyUNG236600 vs. ExPASy Swiss-Prot
Match: P69382 (Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 47  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 106
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 107 QGIPLITGRFDSLEQLDEFSRSF 130
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61  QGIPLITGRFDSLEQLDEFSRSF 83

[Close]
BLAST of ChyUNG236600 vs. ExPASy Swiss-Prot
Match: Q4VZH5 (Cytochrome b559 subunit alpha OS=Cucumis sativus OX=3659 GN=psbE PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 47  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 106
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 107 QGIPLITGRFDSLEQLDEFSRSF 130
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61  QGIPLITGRFDSLEQLDEFSRSF 83

[Close]
BLAST of ChyUNG236600 vs. ExPASy TrEMBL
Match: A0A1N7TE09 (Cytochrome b559 subunit alpha OS=Castanopsis concinna OX=1754207 GN=psbE PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.3e-52
Identity = 105/111 (94.59%), Postives = 106/111 (95.50%), Query Frame = 0 

Query: 19  LGFNFHLLISSFTESIPLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFI 78
           +  N HLLISSFTESIP LTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFI
Sbjct: 1   MSVNSHLLISSFTESIPFLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFI 60

Query: 79  AGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 130
           AGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEFSRSF
Sbjct: 61  AGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFSRSF 111

[Close]
BLAST of ChyUNG236600 vs. ExPASy TrEMBL
Match: A0A443Q5J4 (Cytochrome b559 subunit alpha OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02785200 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.9e-49
Identity = 101/107 (94.39%), Postives = 101/107 (94.39%), Query Frame = 0 

Query: 23  FHLLISSFTESIPLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWL 82
           FHLLI SFTESI  LTVQEYVEL MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWL
Sbjct: 28  FHLLIPSFTESILCLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWL 87

Query: 83  FVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 130
           FVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFD L QLDEFSRSF
Sbjct: 88  FVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLAQLDEFSRSF 134

[Close]
BLAST of ChyUNG236600 vs. ExPASy TrEMBL
Match: A0A443Q4E5 (Cytochrome b559 subunit alpha OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02737300 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.5e-47
Identity = 101/110 (91.82%), Postives = 101/110 (91.82%), Query Frame = 0 

Query: 23  FHLLISSFTESIPLLTVQEYVE---LGMSGSTGERSFADIITSIRYWVIHSITIPSLFIA 82
           FHLLI SFTESI  LTVQEYVE   L MSGSTGERSFADIITSIRYWVIHSITIPSLFIA
Sbjct: 28  FHLLIPSFTESILCLTVQEYVELSMLSMSGSTGERSFADIITSIRYWVIHSITIPSLFIA 87

Query: 83  GWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 130
           GWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFD L QLDEFSRSF
Sbjct: 88  GWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLAQLDEFSRSF 137

[Close]
BLAST of ChyUNG236600 vs. ExPASy TrEMBL
Match: E9KJ40 (Cytochrome b559 subunit alpha OS=Oryza australiensis OX=4532 GN=psbE PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.6e-46
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0 

Query: 26  LISSFTESIPLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVS 85
           +I SFTESIP L VQ++ EL MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVS
Sbjct: 1   MIPSFTESIPFLNVQKFGELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVS 60

Query: 86  TGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 130
           TGLAYDVFGSPRPNEYFTESRQGIPLIT RFDSLEQLDEFSRSF
Sbjct: 61  TGLAYDVFGSPRPNEYFTESRQGIPLITDRFDSLEQLDEFSRSF 104

[Close]
BLAST of ChyUNG236600 vs. ExPASy TrEMBL
Match: E9KJH4 (Cytochrome b559 subunit alpha OS=Microlaena stipoides OX=66030 GN=psbE PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.6e-46
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0 

Query: 26  LISSFTESIPLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVS 85
           +I SFTESIP L VQ++ EL MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVS
Sbjct: 1   MIPSFTESIPFLNVQKFGELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVS 60

Query: 86  TGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 130
           TGLAYDVFGSPRPNEYFTESRQGIPLIT RFDSLEQLDEFSRSF
Sbjct: 61  TGLAYDVFGSPRPNEYFTESRQGIPLITDRFDSLEQLDEFSRSF 104

[Close]
BLAST of ChyUNG236600 vs. NCBI nr
Match: YP_009341794.1 (photosystem II cytochrome b559 alpha subunit [Castanopsis concinna] >ALN96541.1 photosystem II cytochrome b559 alpha subunit [Castanopsis concinna])

HSP 1 Score: 213 bits (541), Expect = 6.47e-69
Identity = 105/111 (94.59%), Postives = 106/111 (95.50%), Query Frame = 0 

Query: 19  LGFNFHLLISSFTESIPLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFI 78
           +  N HLLISSFTESIP LTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFI
Sbjct: 1   MSVNSHLLISSFTESIPFLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFI 60

Query: 79  AGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 129
           AGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFD LEQLDEFSRSF
Sbjct: 61  AGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLEQLDEFSRSF 111

[Close]
BLAST of ChyUNG236600 vs. NCBI nr
Match: RWR98314.1 (photosystem II cytochrome b559 alpha subunit chloroplast [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 202 bits (514), Expect = 1.78e-64
Identity = 101/107 (94.39%), Postives = 101/107 (94.39%), Query Frame = 0 

Query: 23  FHLLISSFTESIPLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWL 82
           FHLLI SFTESI  LTVQEYVEL MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWL
Sbjct: 28  FHLLIPSFTESILCLTVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWL 87

Query: 83  FVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 129
           FVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFD L QLDEFSRSF
Sbjct: 88  FVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLAQLDEFSRSF 134

[Close]
BLAST of ChyUNG236600 vs. NCBI nr
Match: RWR97903.1 (photosystem II cytochrome b559 alpha subunit chloroplast [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 197 bits (500), Expect = 2.67e-62
Identity = 101/110 (91.82%), Postives = 101/110 (91.82%), Query Frame = 0 

Query: 23  FHLLISSFTESIPLLTVQEYVELGM---SGSTGERSFADIITSIRYWVIHSITIPSLFIA 82
           FHLLI SFTESI  LTVQEYVEL M   SGSTGERSFADIITSIRYWVIHSITIPSLFIA
Sbjct: 28  FHLLIPSFTESILCLTVQEYVELSMLSMSGSTGERSFADIITSIRYWVIHSITIPSLFIA 87

Query: 83  GWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 129
           GWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFD L QLDEFSRSF
Sbjct: 88  GWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDPLAQLDEFSRSF 137

[Close]
BLAST of ChyUNG236600 vs. NCBI nr
Match: pir|T14570| (cytochrome b559 component psbE - beet chloroplast [Beta vulgaris] >CAA60967.1 PSII cytochome b559 alpha chain [Beta vulgaris subsp. vulgaris] >CAA60972.1 PSII cytochrome b599 alpha chain [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 196 bits (498), Expect = 2.91e-62
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 22  NFHLLISSFTESIPLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGW 81
           N +LLISSFT+ +PL TVQEYVEL MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGW
Sbjct: 13  NGNLLISSFTD-LPL-TVQEYVELSMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGW 72

Query: 82  LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 129
           LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Sbjct: 73  LFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 118

[Close]
BLAST of ChyUNG236600 vs. NCBI nr
Match: TKY47420.1 (photosystem II cytochrome b559 subunit alpha [Spatholobus suberectus])

HSP 1 Score: 195 bits (495), Expect = 4.56e-62
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 32  ESIPLLTVQEYVELGMSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYD 91
           ESIPLLTVQEYVE  MSGSTGERSFADIITSIRYW+IHSITIPSLFIAGWLFVSTGLAYD
Sbjct: 2   ESIPLLTVQEYVEFNMSGSTGERSFADIITSIRYWIIHSITIPSLFIAGWLFVSTGLAYD 61

Query: 92  VFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 129
           VFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Sbjct: 62  VFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF 99

[Close]
BLAST of ChyUNG236600 vs. TAIR 10
Match: ATCG00580.1 (photosystem II reaction center protein E )

HSP 1 Score: 170.6 bits (431), Expect = 8.1e-43
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0 

Query: 47  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 106
           MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR
Sbjct: 1   MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 107 QGIPLITGRFDSLEQLDEFSRSF 130
           QGIPLITGRFD LEQLDEFSRSF
Sbjct: 61  QGIPLITGRFDPLEQLDEFSRSF 83

The following BLAST results are available for this feature:
BLAST of ChyUNG236600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q70XY93.0e-42100.00Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3[more]
P567793.0e-42100.00Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4[more]
P597023.0e-42100.00Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3[more]
P693823.0e-42100.00Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2[more]
Q4VZH53.0e-42100.00Cytochrome b559 subunit alpha OS=Cucumis sativus OX=3659 GN=psbE PE=3 SV=1[more]
BLAST of ChyUNG236600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1N7TE093.3e-5294.59Cytochrome b559 subunit alpha OS=Castanopsis concinna OX=1754207 GN=psbE PE=3 SV... [more]
A0A443Q5J45.9e-4994.39Cytochrome b559 subunit alpha OS=Cinnamomum micranthum f. kanehirae OX=337451 GN... [more]
A0A443Q4E52.5e-4791.82Cytochrome b559 subunit alpha OS=Cinnamomum micranthum f. kanehirae OX=337451 GN... [more]
E9KJ403.6e-4691.35Cytochrome b559 subunit alpha OS=Oryza australiensis OX=4532 GN=psbE PE=3 SV=1[more]
E9KJH43.6e-4691.35Cytochrome b559 subunit alpha OS=Microlaena stipoides OX=66030 GN=psbE PE=3 SV=1[more]
BLAST of ChyUNG236600 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009341794.16.47e-6994.59photosystem II cytochrome b559 alpha subunit [Castanopsis concinna] >ALN96541.1 ... [more]
RWR98314.11.78e-6494.39photosystem II cytochrome b559 alpha subunit chloroplast [Cinnamomum micranthum ... [more]
RWR97903.12.67e-6291.82photosystem II cytochrome b559 alpha subunit chloroplast [Cinnamomum micranthum ... [more]
pir|T14570|2.91e-6293.52cytochrome b559 component psbE - beet chloroplast [Beta vulgaris] >CAA60967.1 PS... [more]
TKY47420.14.56e-6296.94photosystem II cytochrome b559 subunit alpha [Spatholobus suberectus][more]
BLAST of ChyUNG236600 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00580.18.1e-4398.80photosystem II reaction center protein E [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyGENE3D1.20.5.860Photosystem II cytochrome b559, alpha subunitcoord: 47..129
e-value: 2.4E-49
score: 167.0
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionPFAMPF00284Cytochrom_B559acoord: 88..125
e-value: 8.4E-21
score: 73.4
IPR013081Photosystem II cytochrome b559, N-terminalPFAMPF00283Cytochrom_B559coord: 52..80
e-value: 3.3E-15
score: 55.2
IPR006217Photosystem II cytochrome b559, alpha subunitTIGRFAMTIGR01332TIGR01332coord: 48..126
e-value: 6.4E-47
score: 155.5
IPR006217Photosystem II cytochrome b559, alpha subunitHAMAPMF_00642PSII_PsbEcoord: 47..127
score: 32.335804
NoneNo IPR availablePANTHERPTHR33391:SF15CYTOCHROME B559 SUBUNIT ALPHAcoord: 47..129
NoneNo IPR availablePANTHERPTHR33391CYTOCHROME B559 SUBUNIT BETA-RELATEDcoord: 47..129
NoneNo IPR availableSUPERFAMILY161045Cytochrome b559 subunitscoord: 49..129
IPR006216Photosystem II cytochrome b559, conserved sitePROSITEPS00537CYTOCHROME_B559coord: 60..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ChyUNG236600.1ChyUNG236600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006508 proteolysis
biological_process GO:0015979 photosynthesis
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009539 photosystem II reaction center
cellular_component GO:0009523 photosystem II
molecular_function GO:0004176 ATP-dependent peptidase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0046872 metal ion binding