ChyUNG234410 (gene) Cucumber (hystrix) v1

Overview


Name	ChyUNG234410
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Photosystem II CP47 reaction center protein
Location	scaffold44_size100468: 73639 .. 74537 (+)
RNA-Seq Expression	ChyUNG234410
Synteny	ChyUNG234410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGCCTTGGTATCGTGTTCATACCGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTCATGGGGAGGTTGGAGTATCACAGGAGGGACTATAACGAATCCGGGTATTTGGAGTTACGAAGGTGTGGCCGGAGCACATATTGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTACGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCCGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCGCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCGAGTAGTATCGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCGATTGAATTATTTGGGCCCACTCGTTATCAATGGGATCAGGGATACTTCCAGCAAGAAATATATCGAAGAGTTAGTACCGGGTTAGCCGAAAATCAAAGTTTATCAGA

mRNA sequence

ATGGGTTTGCCTTGGTATCGTGTTCATACCGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTACGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCCGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCGCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCGAGTAGTATCGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCGATTGAATTATTTGGGCCCACTCCAAGAAATATATCGAAGAGTTAGTACCGGGTTAGCCGAAAATCAAAGTTTATCAGA

Coding sequence (CDS)

ATGGGTTTGCCTTGGTATCGTGTTCATACCGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTGCTGGTTGGGCCGGTTCAATGGCCCTATACGAATTAGCAGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATGTGGAGACAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGCTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTACGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAACCGGAAGGGTACAAGCCGTAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTCCGGGCGGAATAGCCTCGCATCATATTGCAGCAGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTTCGTCCGCCCCAACGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTCCTTTCGAGTAGTATCGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCGATTGAATTATTTGGGCCCACTCCAAGAAATATATCGAAGAGTTAGTACCGGGTTAGCCGAAAATCAAAGTTTATCAGA

Protein sequence

MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDFWNSFISLRVGLLWFWCISCNRIVRSGNMGIRSLWINRKGTSRKSCVGCRRV*SFCSGRNSLASYCSRYIGHISGPIPS*CSSAPTSIQRITYGKY*NRPFE*YRCCLFCSFCCCWNYVVWFSNYPD*IIWAHSKKYIEELVPG*PKIKVYQX

Homology

[Close]

BLAST of ChyUNG234410 vs. ExPASy Swiss-Prot
Match: Q06FP2 (Photosystem II CP47 reaction center protein OS=Pelargonium hortorum OX=4031 GN=psbB PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.6e-30
Identity = 66/89 (74.16%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
          MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61 WNSFISLRVGLL--W-FWCISCNRIVRSG 87
          +      R+G+   W  W I+   I  SG
Sbjct: 61 FVIPFMTRLGITNSWGGWSITGGTITNSG 89

[Close]

BLAST of ChyUNG234410 vs. ExPASy Swiss-Prot
Match: A9LYC6 (Photosystem II CP47 reaction center protein OS=Acorus americanus OX=263995 GN=psbB PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
          MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61 WNSFISLRVGLLWFW 76
          +      R+G+   W
Sbjct: 61 FVIPFMTRLGITNSW 75

[Close]

BLAST of ChyUNG234410 vs. ExPASy Swiss-Prot
Match: Q3V508 (Photosystem II CP47 reaction center protein OS=Acorus calamus OX=4465 GN=psbB PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
          MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61 WNSFISLRVGLLWFW 76
          +      R+G+   W
Sbjct: 61 FVIPFMTRLGITNSW 75

[Close]

BLAST of ChyUNG234410 vs. ExPASy Swiss-Prot
Match: A4QJE1 (Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 GN=psbB PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
          MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61 WNSFISLRVGLLWFW 76
          +      R+G+   W
Sbjct: 61 FVIPFMTRLGITNSW 75

[Close]

BLAST of ChyUNG234410 vs. ExPASy Swiss-Prot
Match: A4QJM5 (Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 GN=psbB PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
          MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61 WNSFISLRVGLLWFW 76
          +      R+G+   W
Sbjct: 61 FVIPFMTRLGITNSW 75

[Close]

BLAST of ChyUNG234410 vs. ExPASy TrEMBL
Match: A0A1R3L2P1 (Photosystem antenna protein-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_01313 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 91/136 (66.91%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQD- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGG 60

Query: 61  --FWNSFISLR----------------------VGLLWFWCISCNRIVRSGNMGIRSLWI 112
               + ++ LR                       GLLW W ISCNRIV S NMG+RSLW 
Sbjct: 61  TITKSGYLELRRRGRSPILSFPACASWQLSGIGSGLLWLWRISCNRIVWSWNMGVRSLWT 120

[Close]

BLAST of ChyUNG234410 vs. ExPASy TrEMBL
Match: A0A2P5XJ56 (Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA17289 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 6.0e-35
Identity = 81/117 (69.23%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ-- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV GWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 515 MGLPWYRVHTVVLNDPGRLLSVHIMHTALVTGWAGSMALYELAVFDPSDPVLDPMWRQGR 574

Query: 61  -----DFWNSFISL---RVGLLWFWCISCNRIVRSGNMGIRSLWINRKGTSRKSCVG 108
                  +N F  L   R GLLW W ISCNRIV S N+ +  LW N +G + K  +G
Sbjct: 575 LEYYRGDYNKFGYLELRRSGLLWLWRISCNRIVWSWNIDVGPLWTNWQGPTCKFGMG 631

[Close]

BLAST of ChyUNG234410 vs. ExPASy TrEMBL
Match: A0A3P6DE20 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC103T45478Z PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-33
Identity = 95/201 (47.26%), Postives = 102/201 (50.75%), Query Frame = 0


Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  -----------------WN-----------------------------SFISL----RVG 119
                            WN                             SF++      +G
Sbjct: 61  FVIPFMTRLGITNSWGGWNITGGTITNPGLWSYEGVAAQHISCFVLLGSFLAFGYIGYIG 120

[Close]

BLAST of ChyUNG234410 vs. ExPASy TrEMBL
Match: A0A2G3B7N7 (Photosystem II CP47 reaction center protein OS=Capsicum chinense OX=80379 GN=BC332_27717 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-29
Identity = 72/122 (59.02%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
           MGLPWYRVHTVVLNDPGRLLS HIMH ALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSTHIMHIALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  WNSFISLRVGLL-----W----------------FWCISCNRIVRSGNMGIRSLWINRKG 102
           +      R+G+      W                 W     R+V S NMG++SLW N K 
Sbjct: 61  FVIPFMTRLGITNSWGGWSITGGTVTNPGLYGPGIWVSDPXRLVWSRNMGVQSLWTNGKS 120

[Close]

BLAST of ChyUNG234410 vs. ExPASy TrEMBL
Match: A0A251V2V0 (Putative photosystem antenna protein-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0127531 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 68/98 (69.39%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
          MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61 WNSFISLRVGLLWFWCISCNRIVRSGNMGIRSLWINRK 99
                    L+W W           +MG+RSLW+  K
Sbjct: 61 ----------LVWSW-----------HMGVRSLWLTGK 77

[Close]

BLAST of ChyUNG234410 vs. NCBI nr
Match: OMP13606.1 (Photosystem antenna protein-like protein [Corchorus olitorius])

HSP 1 Score: 174 bits (441), Expect = 5.33e-52
Identity = 91/136 (66.91%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGG 60

Query: 61  W---NSFISLR----------------------VGLLWFWCISCNRIVRSGNMGIRSLWI 111
               + ++ LR                       GLLW W ISCNRIV S NMG+RSLW 
Sbjct: 61  TITKSGYLELRRRGRSPILSFPACASWQLSGIGSGLLWLWRISCNRIVWSWNMGVRSLWT 120

[Close]

BLAST of ChyUNG234410 vs. NCBI nr
Match: KAG2252082.1 (hypothetical protein Bca52824_082218 [Brassica carinata])

HSP 1 Score: 176 bits (446), Expect = 4.33e-49
Identity = 96/173 (55.49%), Postives = 99/173 (57.23%), Query Frame = 0


Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ-- 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAG+MALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGAMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  ------------------------------------------------------DFWNSF 117
                                                                 DFWNSF
Sbjct: 61  FVIPFMTRLGITNSWGGWNITGGTMTNPVFELRRGSRSTYRVFWLVLLGSYLALDFWNSF 120

[Close]

BLAST of ChyUNG234410 vs. NCBI nr
Match: VDD25606.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 154 bits (389), Expect = 4.52e-43
Identity = 95/201 (47.26%), Postives = 102/201 (50.75%), Query Frame = 0


Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  -----------------WN-----------------------------SFISLR----VG 118
                            WN                             SF++      +G
Sbjct: 61  FVIPFMTRLGITNSWGGWNITGGTITNPGLWSYEGVAAQHISCFVLLGSFLAFGYIGYIG 120

[Close]

BLAST of ChyUNG234410 vs. NCBI nr
Match: PPS03373.1 (hypothetical protein GOBAR_AA17289 [Gossypium barbadense])

HSP 1 Score: 158 bits (400), Expect = 1.07e-40
Identity = 81/117 (69.23%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALV GWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 515 MGLPWYRVHTVVLNDPGRLLSVHIMHTALVTGWAGSMALYELAVFDPSDPVLDPMWRQGR 574

Query: 61  -------WNSFISL---RVGLLWFWCISCNRIVRSGNMGIRSLWINRKGTSRKSCVG 107
                  +N F  L   R GLLW W ISCNRIV S N+ +  LW N +G + K  +G
Sbjct: 575 LEYYRGDYNKFGYLELRRSGLLWLWRISCNRIVWSWNIDVGPLWTNWQGPTCKFGMG 631

[Close]

BLAST of ChyUNG234410 vs. NCBI nr
Match: PHU02466.1 (Photosystem II CP47 reaction center protein [Capsicum chinense])

HSP 1 Score: 139 bits (351), Expect = 7.35e-37
Identity = 72/122 (59.02%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
           MGLPWYRVHTVVLNDPGRLLS HIMH ALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1   MGLPWYRVHTVVLNDPGRLLSTHIMHIALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61  WNSFISLRVGLL-----W----------------FWCISCNRIVRSGNMGIRSLWINRKG 101
           +      R+G+      W                 W     R+V S NMG++SLW N K 
Sbjct: 61  FVIPFMTRLGITNSWGGWSITGGTVTNPGLYGPGIWVSDPXRLVWSRNMGVQSLWTNGKS 120

[Close]

BLAST of ChyUNG234410 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-30
Identity = 60/75 (80.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQDF 60
          MGLPWYRVHTVVLNDPGRLL+VHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQ  
Sbjct: 1  MGLPWYRVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

Query: 61 WNSFISLRVGLLWFW 76
          +      R+G+   W
Sbjct: 61 FVIPFMTRLGITNSW 75

[Close]

BLAST of ChyUNG234410 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 48.5 bits (114), Expect = 7.6e-06
Identity = 19/52 (36.54%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 2  GLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLD 54
          G  W+  +  ++N  G+LL  H+ H  L+  WAG+M L+E+A F P  P+ +
Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYE 83

The following BLAST results are available for this feature:

BLAST of ChyUNG234410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06FP2	9.6e-30	74.16	Photosystem II CP47 reaction center protein OS=Pelargonium hortorum OX=4031 GN=p...	[more]
A9LYC6	2.8e-29	81.33	Photosystem II CP47 reaction center protein OS=Acorus americanus OX=263995 GN=ps...	[more]
Q3V508	2.8e-29	81.33	Photosystem II CP47 reaction center protein OS=Acorus calamus OX=4465 GN=psbB PE...	[more]
A4QJE1	2.8e-29	81.33	Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 ...	[more]
A4QJM5	2.8e-29	81.33	Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 ...	[more]

BLAST of ChyUNG234410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3L2P1	1.1e-39	66.91	Photosystem antenna protein-like protein OS=Corchorus olitorius OX=93759 GN=COLO...	[more]
A0A2P5XJ56	6.0e-35	69.23	Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA17289 P...	[more]
A0A3P6DE20	1.5e-33	47.26	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC103T45478Z PE=4 S...	[more]
A0A2G3B7N7	2.2e-29	59.02	Photosystem II CP47 reaction center protein OS=Capsicum chinense OX=80379 GN=BC3...	[more]
A0A251V2V0	1.1e-28	69.39	Putative photosystem antenna protein-like protein OS=Helianthus annuus OX=4232 G...	[more]

BLAST of ChyUNG234410 vs. NCBI nr


Match Name	E-value	Identity	Description
OMP13606.1	5.33e-52	66.91	Photosystem antenna protein-like protein [Corchorus olitorius]	[more]
KAG2252082.1	4.33e-49	55.49	hypothetical protein Bca52824_082218 [Brassica carinata]	[more]
VDD25606.1	4.52e-43	47.26	unnamed protein product [Brassica rapa]	[more]
PPS03373.1	1.07e-40	69.23	hypothetical protein GOBAR_AA17289 [Gossypium barbadense]	[more]
PHU02466.1	7.35e-37	59.02	Photosystem II CP47 reaction center protein [Capsicum chinense]	[more]

BLAST of ChyUNG234410 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	4.4e-30	80.00	photosystem II reaction center protein B	[more]
ATCG00280.1	7.6e-06	36.54	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..60 e-value: 8.9E-33 score: 113.7
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..75
None	No IPR available	PANTHER	PTHR33180:SF14	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 1..75
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 2..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ChyUNG234410.1	ChyUNG234410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009521	photosystem
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding