ChyUNG234340 (gene) Cucumber (hystrix) v1

Overview


Name	ChyUNG234340
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Photosystem II CP43 reaction center protein
Location	scaffold44_size100468: 36484 .. 37053 (+)
RNA-Seq Expression	ChyUNG234340
Synteny	ChyUNG234340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGGGGAGATGTAAGAAAAATTACCAACTTGACCCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGCGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCGTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAA

mRNA sequence

GGGGGGGGAGATGTAAGAAAAATTACCAACTTGACCCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGCGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCGTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAA

Coding sequence (CDS)

GGGGGGGGAGATGTAAGAAAAATTACCAACTTGACCCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGCGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCGTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAA

Protein sequence

GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLK

Homology

[Close]

BLAST of ChyUNG234340 vs. ExPASy Swiss-Prot
Match: Q2QD93 (Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 5.3e-112
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH
Sbjct: 192 GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 251

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 252 ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 311

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGAN+GSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 312 AQAFTFLVRDQRLGANIGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 371

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 372 PNGLDLSRLK 381

[Close]

BLAST of ChyUNG234340 vs. ExPASy Swiss-Prot
Match: B1NWE6 (Photosystem II CP43 reaction center protein OS=Manihot esculenta OX=3983 GN=psbC PE=3 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 5.3e-112
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILGGIWH
Sbjct: 192 GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWH 251

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 252 ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 311

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 312 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 371

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 372 PNGLDLSRLK 381

[Close]

BLAST of ChyUNG234340 vs. ExPASy Swiss-Prot
Match: Q09G50 (Photosystem II CP43 reaction center protein OS=Platanus occidentalis OX=4403 GN=psbC PE=3 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 5.3e-112
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILGGIWH
Sbjct: 180 GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWH 239

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 240 ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 299

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 300 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 359

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 360 PNGLDLSRLK 369

[Close]

BLAST of ChyUNG234340 vs. ExPASy Swiss-Prot
Match: B2XWK1 (Photosystem II CP43 reaction center protein OS=Fagopyrum esculentum subsp. ancestrale OX=180217 GN=psbC PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 6.9e-112
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPS+IFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILGGIWH
Sbjct: 192 GGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWH 251

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 252 ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 311

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 312 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 371

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 372 PNGLDLSRLK 381

[Close]

BLAST of ChyUNG234340 vs. ExPASy Swiss-Prot
Match: Q3C1I3 (Photosystem II CP43 reaction center protein OS=Nicotiana sylvestris OX=4096 GN=psbC PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 6.9e-112
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPS+IFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILGGIWH
Sbjct: 180 GGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWH 239

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 240 ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 299

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 300 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 359

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 360 PNGLDLSRLK 369

[Close]

BLAST of ChyUNG234340 vs. ExPASy TrEMBL
Match: A0A6M3RWB3 (Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii OX=3677 GN=psbC PE=3 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.5e-109
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH
Sbjct: 192 GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 251

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 252 ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 311

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 312 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 371

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 372 PNGLDLSRLK 381

[Close]

BLAST of ChyUNG234340 vs. ExPASy TrEMBL
Match: A0A1S4EU06 (Photosystem II CP43 reaction center protein OS=Cucumis melo OX=3656 GN=psbC PE=3 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.5e-109
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH
Sbjct: 192 GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 251

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 252 ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 311

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 312 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 371

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 372 PNGLDLSRLK 381

[Close]

BLAST of ChyUNG234340 vs. ExPASy TrEMBL
Match: A0A249RZ79 (Photosystem II CP43 reaction center protein OS=Cucumis melo var. cantalupensis OX=3658 GN=psbC PE=3 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.5e-109
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH
Sbjct: 192 GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 251

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 252 ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 311

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 312 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 371

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 372 PNGLDLSRLK 381

[Close]

BLAST of ChyUNG234340 vs. ExPASy TrEMBL
Match: A0A1P8LFP8 (Photosystem II CP43 reaction center protein OS=Citrullus mucosospermus OX=519315 GN=psbC PE=3 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.5e-109
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH
Sbjct: 192 GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 251

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 252 ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 311

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 312 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 371

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 372 PNGLDLSRLK 381

[Close]

BLAST of ChyUNG234340 vs. ExPASy TrEMBL
Match: A0A6M3RTR9 (Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii var. japonica OX=61011 GN=psbC PE=3 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.5e-109
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH
Sbjct: 192 GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 251

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 252 ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 311

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 312 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 371

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 372 PNGLDLSRLK 381

[Close]

BLAST of ChyUNG234340 vs. NCBI nr
Match: QGA85763.1 (photosystem II CP43 chlorophyll apoprotein, partial [Guilfoylia monostylis])

HSP 1 Score: 404 bits (1038), Expect = 6.99e-142
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILGGIWH
Sbjct: 4   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWH 63

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 64  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 123

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 124 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 183

Query: 181 PNGLDLSRLK 190
           PNGLDLSRLK
Sbjct: 184 PNGLDLSRLK 193

[Close]

BLAST of ChyUNG234340 vs. NCBI nr
Match: QGA85773.1 (photosystem II CP43 chlorophyll apoprotein, partial [Piptadeniastrum africanum])

HSP 1 Score: 403 bits (1035), Expect = 1.83e-140
Identity = 187/190 (98.42%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPS++FGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILGGIWH
Sbjct: 9   GGGDVRKITNLTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWH 68

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 69  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 128

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 129 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 188

Query: 181 PNGLDLSRLK 190
           PNGLDLSRLK
Sbjct: 189 PNGLDLSRLK 198

[Close]

BLAST of ChyUNG234340 vs. NCBI nr
Match: AFA27425.1 (photosystem II CP43 chlorophyll apoprotein, partial [Flagellaria indica])

HSP 1 Score: 402 bits (1034), Expect = 1.95e-140
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILGGIWH
Sbjct: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWH 60

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRA VWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 61  ILTKPFAWARRAFVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180

Query: 181 PNGLDLSRLK 190
           PNGLDLSRLK
Sbjct: 181 PNGLDLSRLK 190

[Close]

BLAST of ChyUNG234340 vs. NCBI nr
Match: QHN92681.1 (Photosystem II CP43 reaction center protein [Arachis hypogaea])

HSP 1 Score: 404 bits (1037), Expect = 2.34e-140
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPS+IFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILGGIWH
Sbjct: 36  GGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWH 95

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 96  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 155

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 156 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 215

Query: 181 PNGLDLSRLK 190
           PNGLDLSRLK
Sbjct: 216 PNGLDLSRLK 225

[Close]

BLAST of ChyUNG234340 vs. NCBI nr
Match: QGA85758.1 (photosystem II CP43 chlorophyll apoprotein, partial [Diptychandra aurantiaca])

HSP 1 Score: 402 bits (1032), Expect = 8.87e-140
Identity = 186/190 (97.89%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTL+PS++FGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICILGGIWH
Sbjct: 24  GGGDVRKITNLTLNPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWH 83

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 84  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 143

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 144 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 203

Query: 181 PNGLDLSRLK 190
           PNGLDLSRLK
Sbjct: 204 PNGLDLSRLK 213

[Close]

BLAST of ChyUNG234340 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 397.9 bits (1021), Expect = 4.6e-111
Identity = 186/190 (97.89%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWH 60
           GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGHVWLGSICI GGIWH
Sbjct: 192 GGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWH 251

Query: 61  ILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQ 120
           ILTKPFAWARRALVWSGEAYLSYSL ALSV GFIACCFVWFNNTAYPSEFYGPTGPEASQ
Sbjct: 252 ILTKPFAWARRALVWSGEAYLSYSLAALSVCGFIACCFVWFNNTAYPSEFYGPTGPEASQ 311

Query: 121 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 180
           AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG
Sbjct: 312 AQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRG 371

Query: 181 PNGLDLSRLK 191
           PNGLDLSRLK
Sbjct: 372 PNGLDLSRLK 381

The following BLAST results are available for this feature:

BLAST of ChyUNG234340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD93	5.3e-112	99.47	Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC P...	[more]
B1NWE6	5.3e-112	99.47	Photosystem II CP43 reaction center protein OS=Manihot esculenta OX=3983 GN=psbC...	[more]
Q09G50	5.3e-112	99.47	Photosystem II CP43 reaction center protein OS=Platanus occidentalis OX=4403 GN=...	[more]
B2XWK1	6.9e-112	98.95	Photosystem II CP43 reaction center protein OS=Fagopyrum esculentum subsp. ances...	[more]
Q3C1I3	6.9e-112	98.95	Photosystem II CP43 reaction center protein OS=Nicotiana sylvestris OX=4096 GN=p...	[more]

BLAST of ChyUNG234340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M3RWB3	1.5e-109	100.00	Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii OX=3677 G...	[more]
A0A1S4EU06	1.5e-109	100.00	Photosystem II CP43 reaction center protein OS=Cucumis melo OX=3656 GN=psbC PE=3...	[more]
A0A249RZ79	1.5e-109	100.00	Photosystem II CP43 reaction center protein OS=Cucumis melo var. cantalupensis O...	[more]
A0A1P8LFP8	1.5e-109	100.00	Photosystem II CP43 reaction center protein OS=Citrullus mucosospermus OX=519315...	[more]
A0A6M3RTR9	1.5e-109	100.00	Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii var. japo...	[more]

BLAST of ChyUNG234340 vs. NCBI nr


Match Name	E-value	Identity	Description
QGA85763.1	6.99e-142	99.47	photosystem II CP43 chlorophyll apoprotein, partial [Guilfoylia monostylis]	[more]
QGA85773.1	1.83e-140	98.42	photosystem II CP43 chlorophyll apoprotein, partial [Piptadeniastrum africanum]	[more]
AFA27425.1	1.95e-140	98.95	photosystem II CP43 chlorophyll apoprotein, partial [Flagellaria indica]	[more]
QHN92681.1	2.34e-140	98.95	Photosystem II CP43 reaction center protein [Arachis hypogaea]	[more]
QGA85758.1	8.87e-140	97.89	photosystem II CP43 chlorophyll apoprotein, partial [Diptychandra aurantiaca]	[more]

BLAST of ChyUNG234340 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	4.6e-111	97.89	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 8..173 e-value: 7.9E-52 score: 176.6
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..190
IPR044900	Photosystem II CP43 reaction centre protein superfamily	GENE3D	1.10.10.670	photosystem ii from thermosynechococcus elongatus	coord: 113..190 e-value: 7.3E-44 score: 149.4
None	No IPR available	PANTHER	PTHR33180:SF21	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..190
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 2..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ChyUNG234340.1	ChyUNG234340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding