ChyUNG227430 (gene) Cucumber (hystrix) v1

Overview
NameChyUNG227430
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDUF4283 domain-containing protein
Locationscaffold25_size3045174: 2722365 .. 2723167 (+)
RNA-Seq ExpressionChyUNG227430
SyntenyChyUNG227430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTTGAAGATTGTGAGCAGACTGTAGCTACTGAAATGAAAGAAAACGGTGGTGAAGCCCAGTCTAAAGGAGAGCCGAGAGCTTTTGGTAAATCATCATGGGCTTCATTATTTGGGTCTTCAAGTAGGAATCCTTTGATATATACTCCTCCTTCAATCGTAGGGGAGAAAATTGTGGTGATCCCTGCTACAGAAGTCATTGAACAATGAGTTAGAGTGTGGGAGAACTCCCTAGTAGGGCAATTAATTGCCGCAAAATTGCCGTATCAAGTTATTTATCGACTAATAGAGAAGATTTGGGGAAGAGTTGAAATGCCTACAATCACTCTAATGGAGAATGGCCTCATTTGTTTCCAATTTAAAAGTCCGAAATCGATAGACTGGATTCTGTCCTGTGGTCCGTGGCACCTTGGAGGAAAACCGATGCTCCTTCGAAAATGGATGCCAGGTATTGTTCCTGATACATTTCTTTTTTATTCTATTCCTGTTTGGATTAAATTAAGGCGAGTCCCAATGGAGTTATGGACGGATGCCAGTTTGACTGTTGTTGCAAGTGCAATAGAAAAACCTCTGTCCTTAGACCTTGCTACCAAAGAAAGGCGTCGGCTTTCTTATGCCCGTATTTGTGTGGAACTAAATGTAGACAACACTATGCCTGCCGATATAACTGTTAATCTTAGAGGAGAGGAGTTCATAGTGAATGTTACGTATGAGTGGAAGCCGAGAAAGTGCAACTTGTGTAGATCCTTTGGACACTCTAGTGGTACCTGCCCTAAGAGTGTAGAAAAAGAAGCCAGTAAATAG

mRNA sequence

TTGTTGAAGATTGTGAGCAGACTGTAGCTACTGAAATGAAAGAAAACGGTGGTGAAGCCCAGTCTAAAGGAGAGCCGAGAGCTTTTGGTAAATCATCATGGGCTTCATTATTTGGGTCTTCAAGTAGGAATCCTTTGATATATACTCCTCCTTCAATCGTAGGGGAGAAAATTGTGGTGATCCCTGCTACAGAATCCGAAATCGATAGACTGGATTCTGTCCTGTGGTCCGTGGCACCTTGGAGGAAAACCGATGCTCCTTCGAAAATGGATGCCAGGCGAGTCCCAATGGAGTTATGGACGGATGCCAGTTTGACTGTTGTTGCAAGTGCAATAGAAAAACCTCTGTCCTTAGACCTTGCTACCAAAGAAAGGCGTCGGCTTTCTTATGCCCGTATTTGTGTGGAACTAAATGTAGACAACACTATGCCTGCCGATATAACTGTTAATCTTAGAGGAGAGGAGTTCATAGTGAATGTTACGTATGAGTGGAAGCCGAGAAAGTGCAACTTGTGTAGATCCTTTGGACACTCTAGTGGTACCTGCCCTAAGAGTGTAGAAAAAGAAGCCAGTAAATAG

Coding sequence (CDS)

TTGTTGAAGATTGTGAGCAGACTGTAGCTACTGAAATGAAAGAAAACGGTGGTGAAGCCCAGTCTAAAGGAGAGCCGAGAGCTTTTGGTAAATCATCATGGGCTTCATTATTTGGGTCTTCAAGTAGGAATCCTTTGATATATACTCCTCCTTCAATCGTAGGGGAGAAAATTGTGGTGATCCCTGCTACAGAATCCGAAATCGATAGACTGGATTCTGTCCTGTGGTCCGTGGCACCTTGGAGGAAAACCGATGCTCCTTCGAAAATGGATGCCAGGCGAGTCCCAATGGAGTTATGGACGGATGCCAGTTTGACTGTTGTTGCAAGTGCAATAGAAAAACCTCTGTCCTTAGACCTTGCTACCAAAGAAAGGCGTCGGCTTTCTTATGCCCGTATTTGTGTGGAACTAAATGTAGACAACACTATGCCTGCCGATATAACTGTTAATCTTAGAGGAGAGGAGTTCATAGTGAATGTTACGTATGAGTGGAAGCCGAGAAAGTGCAACTTGTGTAGATCCTTTGGACACTCTAGTGGTACCTGCCCTAAGAGTGTAGAAAAAGAAGCCAGTAAATAG

Protein sequence

LLKIVSRL*LLK*KKTVVKPSLKESRELLVNHHGLHYLGLQVGIL*YILLLQS*GRKLW*SLLQNPKSIDWILSCGPWHLGGKPMLLRKWMPGESQWSYGRMPV*LLLQVQ*KNLCP*TLLPKKGVGFLMPVFVWN*M*TTLCLPI*LLILEERSS**MLRMSGSRESATCVDPLDTLVVPALRV*KKKPVNX
Homology
[Close]
BLAST of ChyUNG227430 vs. ExPASy TrEMBL
Match: A0A1S4E4L1 (uncharacterized protein LOC103502197 OS=Cucumis melo OX=3656 GN=LOC103502197 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-06
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 67  KSIDWILSCGPWHLGGKPMLLRKWMPGE 95
           KS++WILS GPWHLGGKPMLLRKW PGE
Sbjct: 253 KSLEWILSRGPWHLGGKPMLLRKWTPGE 280

[Close]
BLAST of ChyUNG227430 vs. ExPASy TrEMBL
Match: A0A5A7TK34 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00070 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 0 

Query: 67  KSIDWILSCGPWHLGGKPMLLRKWMPG 94
           KS++WILS GPWHLGGKPMLLRKW PG
Sbjct: 253 KSLEWILSRGPWHLGGKPMLLRKWTPG 279

[Close]
BLAST of ChyUNG227430 vs. ExPASy TrEMBL
Match: A0A5A7V507 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00710 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-05
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 67  KSIDWILSCGPWHLGGKPMLLRKWMPG 94
           KS++WILS GPWHLGGKPML RKW PG
Sbjct: 443 KSVEWILSRGPWHLGGKPMLFRKWTPG 469

[Close]
BLAST of ChyUNG227430 vs. ExPASy TrEMBL
Match: A0A1S3CC83 (uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-05
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 67  KSIDWILSCGPWHLGGKPMLLRKWMPG 94
           KS++WILS GPWHLGGKPML RKW PG
Sbjct: 324 KSVEWILSRGPWHLGGKPMLFRKWTPG 350

[Close]
BLAST of ChyUNG227430 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-05
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 64 QNPKSIDWILSCGPWHLGGKPMLLRKWMPG 94
          + P S++WILS GPWHLGGKPMLLRKW  G
Sbjct: 17 RRPNSVEWILSRGPWHLGGKPMLLRKWTLG 46

[Close]
BLAST of ChyUNG227430 vs. NCBI nr
Match: XP_016903171.1 (PREDICTED: uncharacterized protein LOC103502197 [Cucumis melo] >XP_016903172.1 PREDICTED: uncharacterized protein LOC103502197 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 1.14e-07
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 67  KSIDWILSCGPWHLGGKPMLLRKWMPGES 95
           KS++WILS GPWHLGGKPMLLRKW PGE 
Sbjct: 253 KSLEWILSRGPWHLGGKPMLLRKWTPGEG 281

[Close]
BLAST of ChyUNG227430 vs. NCBI nr
Match: XP_031745056.1 (uncharacterized protein LOC116405235 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.27e-07
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 64  QNPKSIDWILSCGPWHLGGKPMLLRKWMPG--ESQWSYGRMPV 104
           ++ KSI+WILS GPWHLGGKPMLLRKW PG     + +  +PV
Sbjct: 88  KHLKSIEWILSGGPWHLGGKPMLLRKWTPGIVPESFVFNSVPV 130

[Close]
BLAST of ChyUNG227430 vs. NCBI nr
Match: XP_039041009.1 (uncharacterized protein LOC120179498 [Hibiscus syriacus])

HSP 1 Score: 61.6 bits (148), Expect = 3.27e-07
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 55  GRKLW*SLLQNPKSIDWILSCGPWHLGGKPMLLRKWMPGESQWSYG--RMPV*LLLQVQ* 114
           G KL+  L  N  S DW+L  GPWH+  KP++LRKW P   +  +   RMPV     VQ 
Sbjct: 87  GSKLYVFLFANGASRDWVLENGPWHIQHKPLVLRKWEPNLKRLDFNLERMPV----WVQL 146

Query: 115 KNLCP*TLLPKKGVGFLM 130
            N+ P  L  KKG+ +++
Sbjct: 147 YNI-PLELYSKKGLSYVV 159

[Close]
BLAST of ChyUNG227430 vs. NCBI nr
Match: XP_031740405.1 (uncharacterized protein LOC116403411 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 3.37e-07
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 64  QNPKSIDWILSCGPWHLGGKPMLLRKWMPG--ESQWSYGRMPV 104
           ++ KSI WILS GPWHLGGKPMLLRKW PG     + +  +PV
Sbjct: 11  KHLKSIQWILSRGPWHLGGKPMLLRKWTPGIVPESFVFDSVPV 53

[Close]
BLAST of ChyUNG227430 vs. NCBI nr
Match: XP_031745634.1 (uncharacterized protein LOC116406053 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 4.27e-07
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 64 QNPKSIDWILSCGPWHLGGKPMLLRKWMPG 93
          ++ KSI+WILS GPWHLGGKPMLLRKW PG
Sbjct: 11 KHLKSIEWILSRGPWHLGGKPMLLRKWTPG 40

The following BLAST results are available for this feature:
BLAST of ChyUNG227430 vs.
Match NameE-valueIdentityDescription
BLAST of ChyUNG227430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E4L13.1e-0685.71uncharacterized protein LOC103502197 OS=Cucumis melo OX=3656 GN=LOC103502197 PE=... [more]
A0A5A7TK341.6e-0585.19DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7V5073.5e-0581.48DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A1S3CC833.5e-0581.48uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=... [more]
A0A5A7V5J24.5e-0573.33Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
BLAST of ChyUNG227430 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903171.11.14e-0782.76PREDICTED: uncharacterized protein LOC103502197 [Cucumis melo] >XP_016903172.1 P... [more]
XP_031745056.11.27e-0760.47uncharacterized protein LOC116405235 [Cucumis sativus][more]
XP_039041009.13.27e-0741.03uncharacterized protein LOC120179498 [Hibiscus syriacus][more]
XP_031740405.13.37e-0760.47uncharacterized protein LOC116403411 [Cucumis sativus][more]
XP_031745634.14.27e-0780.00uncharacterized protein LOC116406053 [Cucumis sativus][more]
BLAST of ChyUNG227430 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ChyUNG227430.1ChyUNG227430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0000166 nucleotide binding