ChyUNG226870 (gene) Cucumber (hystrix) v1

Overview


Name	ChyUNG226870
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA-directed RNA polymerase II subunit RPB7
Location	scaffold25_size3045174: 1579984 .. 1594997 (-)
RNA-Seq Expression	ChyUNG226870
Synteny	ChyUNG226870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAATTACCAACAGAGAGGAAGAGGTCGCATTTGATGCGAAGCGGAAACCTACTGATTCTTGCTTCCAACCCAAAGAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGTGGTTGAGGGTGAAGAATCCTGTAATTATGTGAAGAACAATGCTGAGAATGGTGACCATAAGGGAAGTGATGAACAGATTGATAATATTTCTTCTACGGTTCTGGAAGGGAAGGGTGACGATGGAGTTGATGGAGTTGATGGAGCTGATGGAGCTAGTTTAGATGCGGGAGATGAGGAGGAGGATTATGAGGACGAAGACGATAGTGAGGATGATGAAAAATCGAGTGGCAAAGTGGCTGAGGATCGGAAGGGAAAAGGGATTATGAAGGATGACAAAGGAAAAGGGAAATTGATAGAGGAAGACGACGACGACGATGAAGATTCCAGTGATGATGGAAGCGAATTGGATTCTGAAGAGAGCGATTTGTCGGATGATCCACTTGCGGAGGTCGATTTGGACAACATCCTTCCTGCAAGGACGAGGAGGCGAACGGTTCACCCTGGAGTTTATTTCGCTACGGATCTGGGGAACGCCGACGATGATAGCAGTGATAGCGATGCTTGAAACGTTCAAGAAGGTCAGTAAAATTCGGCAATCGAACCTGGAGTTAGTACAACTGATATGAGTTGATGTTTCTCAGTTTTATCTTCTTTAGGGATAATGCAGCAATGTAATGAATTACTCCCAGCAATTTGATTTTTAAGGTTACATGTTTTCTTGTTTTTCCACTTTGATATCGGTAGCATTGAGGATCACTTGCATCTATGGCTTTCTTTAATATGCCTTTTTCTTAGAAATTTTTCTTTGTAGGGGGATTGTACTCATCAATCCAATCTTAATTGTAAGCAAAAATTAATGGATAGCAATGGAGTTTGTAACATTTGATTCTTCACTTATTGGATATGTTAGTGATGCCAATACTCTTGCACATTGAAAAGCAGTTTTTTGAGATTTAGAACATCACTTCCAAGCCCCAAGCATTATTGCAGTAAAAATACCTTGAGAACAATAAAATGTGTTGTTAAAGTTCAATGTTTGCAACCATGGAGTGAAAAAAATCCTGGAAAAAGACTAACTTGATGACAATAACTTAACAATCTGTGAGGGAGAAATCCTGTTGAATGAAAGAATTAACTTTTGCATATACATTTTCACATTCTTCATCTTCAGTTTGACTGTGTTTACATTTTTCTTTTTAGCAAAAAATATGTGTTTATCTGATGGAGAAGGAAGTGTCAGTTATGGAGTTTATGTTGGATGTTGTTATATTCTGCTTATCAGTGCGTTTGACTATATATGTATGTGACTATGTGAGTCATCAGTTTAGATGTGCTCACCATTCTTGGTTCTATCGATTGAGCTTGTTTATTTGGGACAACTTTATCTGTGGTGGTATGTTATGGAGATGCTGGTATGCTAACATAGTATAGTTTTTCGTTTGCTTATCCTTATGTACTGCTTTGACATTTTTCTTCTCGTTGTTCTAGAGTATATACTCAATTTAGGGAGAGGGTAGGGGGAGTAGGGTGTAGGGAGTATGAAGTAGGGTGTAGGGAGTATGAAGTAGGGCGTAGGGGTGTAGAGTTGGAAGTTAAGAAACAATGTACTGATTTTTCATCAGAAGAAAAGAAACAATGTACCGATGGGGTGTAGGAAATACGTTAAAGATAAGAGGAGAAGGATATTGTACCAAATCCAAAAGCCAAGGGGGAGGGAGGGAGATTGCAAAAAGATTCTTCAGTTAGTATGATCAGAAAAGACACAAAATCCTCAACCATATTAAACCACTCCAAAGTCTAGGACATTTCAGTCCTCGAAGTTATCACTTGGTAAAGTGTCTTTCCTCTACGAGAGACACTCGCCTCTCAACCAGACAAAACTTATGCGACCCCCACTTCAAGGAGCGGTGGGGTAAATTTGAAAGAATGCAGTTATAGAATTTACTTAATACGTGATAAATGGTTTGTGGATTAAAGTAGTCATTAACACCCTCTCCCCCCACCCCCACTGAAAACGACTTGTGCTATCCCTTCCCAAGTAGCGGTGGGGTAATTTCAAATAAATACATGCACAAACCTCCAATTAAATGTTGGGATTCATTAGAGTTATCTAACTTTATCATAATGGTAAAAGAGTTATATGGTTCTCTTTTGACAATTTCTTTAAACGTGTAACTCCACCTTTGCCACCTAAACAATACATCTCAAATATCCAGATTCCTCTCTTGGATATTGCGAGTTCTTAGTTTTCACAGAGCTTGAGAAGTTATCTAACTTTCTTAGACTTGGATTTTACCCTAAGACTTGTATAAATCCCTCAATAACACAAGAAGTTGTTTGAAGAAAATGTTCTAGGAAAGCCACAAAGAATAGAAGTTGCATTCCATCATCTTTTTAAGAAGCATATGACCTCTTTGATAATTAATCATTTCATTGCTATAATATAAAATTTAGATCCTAAGTGCTTTTCTGATCAATGATTTTGTGATCAAGAATCTTCCTGGAATCATATGGATCTAGCAATGCCTACATTTTTCCCTTTTAAGAGTTTAACATAACATGGGTGAAAAAATGCTAAGGATGTCATAATCAGTTAGTTATGCTATATGTGTTGCTGGGATGGTCACATTTTTAGCTGTTTAGCTTGGGAGTTGGAGGGGGATTCCATATATCTTATGATGTATCAGATGTTTACTGTGTTTTGTGGGTTTAGAAAAATAAGAGAATCTTTTCTTTTATGCAAGAAAAGTTTAATGATCTGAAATCAGAATGGAGTAGACTTTGGATTCACTTTTCGATGCATTTTTTTTTTCTGTGCAGTTCAACAATATGGTTCGCCCTCTTTCCCTTCTCTTATGTGTCTGTACACCGACCAGGAATCTATTTAATATCAAGATATATGAACAGAAACAGATGTTTCTTTTTCCTTTCTTTTTTAATCTTTAATTTATAGAGTTGTTTTTTAATTTAATTAATTTCTATATCGGTTCTAGTTACTTCTGTTTTTATTGATATTTATACCCCATATAATTGAAAGTAATTGTTCTGGACAGTATATTTTGGATAATAATAATTACGTGTATAGCAATTTTTTTAGAAGATTGCAAATATAGAATTTGTTGATGTTTTTTTTGTTAGGGAGAAACTCTATAGTTGATAGATTTCAACCGGAGATATGGTCTATTACTTTATATATAAATATAAAATCTCTTGCATTGTGTTATATTTGGTAATATGATGGCTTCATTGCTATATTTGTAATTTATTCTTGGGTGTTTGGACTATCTAACTTCACAAGTTTTTCTTTCTTTTGTTTGGGGAAGTTGGCATGTTTATTGAGAAATCTTTCTTTCGATTTTCTAATTCTAATATATTAATTTCAGAATTCATAGTTCAACTTAGTGTTCTAAACACACCAACATGGTGTATGAACTTTGTGATTACTTGTTTGGTTCAAATTCTATTTTGGTCTCTACATTTTGTATCTTTCTAATTCTTTTCCTAAATTTTTAAAAATGTTTGTTTTAGTCCTTGTCGAGATTTGAGATTTTATTAACTCTCTAACAAAATAACGTGGTTGCTTCTATATATGAATAGTTAGTCTGTCAAATAATATGAACAGTTTTAAAAATTTAAGATTTTAATTTTAAATTAGAGGTTAGATGGTAAGTTGATTTTTTATAGAACTCTAAATGTCATTTTGTTTTTAAGATTTTGATAGATACCATTTTGGCACATTGATATTTATTCTACTTCACTTTCTCAAACTCATGCTAAATGTAATTTTATCTACATACAATTTTTTTAATGCATCAAATTTTGGATATTTTGTGATACTTTGAGTTCTTTTTTTTCTCTCTTTCTTCCAATTCTTTTTTGTTTTTTGGGGGTGATTTAGCTTAAGAATATTTGTCTACAATTTCTTATAGTTCATTTTATAGATGAGTTGTATTTATACTTATTTTATTTTTTAATTTATTTTACTTTGTCATGGATGTTAACACATATGTCATTTCCATTCTATTTTATTTTATAGTACTCCCAATGTTCTTCTAATTTGTTTCAAGCATCCAATTTGAAAAAAAAAATGGTAGTAAGGGTAGAAGAGTCGAGATGTGAGAGATTTGAGTTTTTGAGGAAAAAAAAAAAAAGAAAAAATAGTTTGTCGGTTTATTTGATAAATGTGTTGGTTATGTTTTTGTGTTGGCATAGAAGATTTTTTGGTTATTTATCGATTTAATTAATATAATGAATCTAGACTCTAATAATCTAAATATAGAAGTCACTACTTTTTTTAAAAAAAAAAAAATTTGAGACTAGACGTTTTTAAATGTTTAGGTCCAAAAATAAAACAGTTACAAAGTTGAATAAGGAGGGTAGGATTTATGCCTTACTTGTTTTGAACCTATATAATAGGTTTGCCACTTTGGTACTCCTTTGCGTTGGGCAATCAGTGTTTAGAAGTGTTTCAATGAATTTGAGAATTTGTACTTGTATTTTATAAATATATTTTTCATTATAAAAATGCGCCATCGTATATTATTTTTCATTCATTTTATTATATCATCAGAATATATTTAAATTTAATAACATTCTCTAAATTCAAATGTTAATCATAATCTTAGAATTTGTCTAAATTTTGTTTATCACCAAACAACATTCCAAATTCTTACACAACAACAATCCCTACGGTAAATAAATAAATTGTAGTGAAATTTGAAAGTTCCATTTTTTTTTTCTCATTTGAGGGTAAATCTTCATTTAGTATTGAACTATCAAACCGAATTTAGTATAAGTTAAAGTTATATGTTCAATAAAACTACTATTTTTAAAATTAATTTAAGTAAATCACTTTTCCAATTATTTTTTGTTTTAAGGCTCAACTTCTGGAAATAAATTTTAAAAATATTTCTTAAAAAACAACCCCACCAAAATTCACTTCATCTTCCACAAAGAAACCCATGAGCTCCTCAACAGTGAACAATTTGAAGTTGAACCCCACGGCCCACAAAAGCCTTTTTGAGTTTTTGTTGGATACATTTTTAATATAATAGCTTTTAACTCTCTCAAGCTAAGCTATTTAAAATCATGCTTTTAGTATCCCTTCCCTTCCCTCGTATGCTGTTTTTTTTAAAGAATTCTGATTTGTATACTCATTTGTTCAAATGTTTGGTTTACAAGTGATATATATATATATATATATAGCTTTGTCATCTTGAATCATTTAGTAAATCTTTTATCATAAGGTGACTTCCCTTTCATTCTATAGAGCAGAGAGAAACTTAGTATAGATGCTATTTAATAAGTGATATCTAATTTTGTCACTATTGCAAAACGATTATGTACATCTTTTATGATAGAGTGACTTTCCTTTTCGAGATATACTCTCTCCTTCGTTAGAAATTACTTATATATTATTCTAATCCAAGTAATGGTACAACATGTAATTTTGAAAGAATTCAAGCATATAACTTGATTTGGATGCTAGTTAATAAGTGATATCTAGCTTTTTCATCATTGTGAAATAACTATATACATTTTCTATGGTAATATATAACTCCACTCTTTAAGAGACGCATGCTAATTAATTGGAAATGACCCATATTATTCCACTAAAAAGGAAGATGAGTGGGTAATTTTGAAAGAATTCAACCATCAAACAAGTTCAGTTTTTTTTTTTTATAAAAAAGAAAACTAATTTTTAATTGATTTGAACAAATAATTTTTTTAATTATTTTTTCTAAAAAATTTGGTATGACAAATGCTTCTTAAAATAGAATTTCCAAAAATATTTCTTTAAAAAAACTCCCCAAAATTTACATGGTTGATTATCAAAGAGACGCATGGCCCAACAGTGATGGAGGACATGATTCAATTTTGGAGTTGAACCCATGGCCCACAATTGAGCCCACAAAAAGATTAAAAAAAACAAAGTCATAACATTATAACACTATAAAGCTCTTTGATTTATGCTTCTTTGCTATCCCTTCTCAAGCAGTGGGATAATTTTGAAATAGTTTCACTTCGACCTAAAACTCAACTTTGATGCTAGTCTATAATCGAGGTTGACTTTTTTTATCGTTGTAAAATATATTATAGGTGAGTTTCTCTTTATCCGATAAATTCTAAATCAATACTTAAGGTATCTTCACTCTTTAATAGCTACTCACTTCTTTTTCTGAAAGTATAATATACTATTCATTTTATGTAGTTGGAGAGACTGTTTTGAAAAAATCTCGAACCCAACTTTACTTATATGTTGGTTAACAAGTTATATTTAACTTTTCTTTTTTGGTGGTGTAATCAAACAGCCATAGTTTCTTATAAAACAAACAGAAATAAAAATGACAAAACAAACAAACTAGCTTTAAAGGTAATTTTACTCCTATCTATCCTTACTTGTGTTATCTTTATCGAGTAGTTGTATGTAATTTTGGTTGAATTGGAGCATAATATTGAATATACATAAATGCTACTTAATAAGTGATAACCTTAGCATTTTGTAAAACAAGTTTGTAAATTTATTATGATAAAATTTTAATCTAAGTCTTTAATGTGACTTCACTTTTCAATACTTATTCATCTCTTTCTCTCGAATTTCGTGTGTTAAATTTTATTTTTCTACTTTTTCTCATTGTTTTTTTAATTTCTGCGGTCGATTTATTGTTATTTAAAAAAAGAAAAAAAAAGTTTGAAAAAAAAAGTTTCTTTAGAATTTAATTCCCATAACAATGGAAAAAATCCTATAAAAAATTAAAAAAAATTCTATTACACTTATTTAAATAATAATATGTATAATTAAAGTATAAGTTATGTATGTGGAATAATAATTTATCACATTTGATTATTCTATTAGATTGAGAATATTTAATTAAGACTCATTCCTAATTGTGTATAGACTAAATAGGTAGAAGTCTTCTTAGATTGATTAGAGTATAATCTAATTGAACCAGTATAGGCTATAATCCCAAATATATGGCTTCAATCCATCAAGAGAAAAATCTTGCTCAAGAATTCGAATTTTGGTTAAGAAAGACAATATAATTAGGTACGTTATTTTTTACAATTTAACATGAATATTATCCTATTATTAATCTATTATATAGATTTAAAATCTATCATTAGGATAACACTTTCATCCATACAAATTGAAAAATTAGAGGAAAAAAAAGTCATTGGATTTCCATTTTTACAAAAACTATCAAAAGTAAGTTAAAACCAAAAACTTTTTATAAATATTGTTAATAGAGGTCTATTATGGGCCATATGTCACTCTCTCCACATTCATTTACCTTGTTGAATATCTTGAAGATACTCACTCTTAGTGGTCATGATTGGTTGTCAAATTATCTATAAATAGTGTATTCGGTTGATTTGTAAGATACTCAATATTGGTTGAAATTTCAAACACCTTTGAGATATTGGAAAATTTTGAAATTTTAAGAATATTATTTTAGTTGTTTTGTCTTTTTTTATTTTTTTTTATTATTATATTATATTATAGTTTCTCCATATCCACACTTCAGTCATGTGTTGTTGTGTTCCTCAATTTTACAACAAAACTATGTAGTGGAAGGAAATAATTTGAATTTTATAATTAAATTTTTTATTTTTAGAAAACAATTAAATCCAATCGGTTGAATTTTTTGAAGTCAATTCAATATTTAAAAAGAATTAAAAGGAATTGGTTTTAGGAATACTATAAATTTTGAGTAATTATAATGGGTAACAATTTTAGGAATAATATCTTAGTGTATAAAATACATATAAGTACAATAAATTAGTACATATCAATTTTTGTTAGTGTTTAGGTTTCTATTATTGATATAATTTTTATGAAAAAAAATTATTACATAAGCTAATACTTCTAATTGCTATCATTACAACTCTCATCAAATTTTAAGAATTTACGAAAATAGGCTAGAGTCTACACCGATAATAAAATTACAAAAATCAAATAAATTTTTTTAAAAAATAATCTCAATTTGATTTGTTTCAAAAGTTAATTTATCTCTAAATTGTTTGGATTATTTTGTTATCTACTCGATATTAAAATTTAAAATTATTTATCTAAAAATAATAAATATTCAATATTTTTCTAATACAAAATCTTGGAAAGATATCAATCTTTTAATTGTATAGAACTTCGTTTGGATGCTAATACAAAAGAATGTAGGTATATAACTTCATTTAAATGCTACTTAATAAGTGAGGAATGGTTTGTGAATTTCTTTGACAAAACCTTTCAAAGTAGTCCCTAAGATGTCTTCTCTTCAATAGCCACTCACTTCCTTTATGTGAAAACGACTTGTGCTATCCCTTCCCAAGTAGCGGTGGGGTAATTTCAAATAAATACATGCACAAAATTCCAATCAAATGTTGGGATTCTCTTTTTACAATATCTTTAAACGTGTAACTGCATCTTTACATCTTTGTCACCTAAACAATACTTCTCAAATACAAAGATTTTCCACTTCGATATAACAAATTCTAATTGATATAAATTTAAAATTATTTATATAAAAACAATAAATATTCATAAAAAAAATTATATAACAAAATCTTTGAAAGATATCAATTTTTAAATCAAGATATAATATAAAAAACCAACATTATGTTCTACTTAGTTTTTGTTTAGAAAGTGTATTGGTATTTAATATATAAACGATAGTTTAAGATTTACTTAAATGAAAATGAAAATCATTCTACTAATTTCAAGAAAAAGATAATCATTCAACCAATTTCAAGAAGTTTTTCTTTTGGAGGCAAAACCAATTTACAGAAGGTTTATACAAATAATAATTAGATTAAAAACTAACATTTTCAAAATTTTAAAATAAAAACTTTATAATTTTACTACAACGTGTTTGAGTATTTCAAAACAAATCCATAATTTATTAAAAATTCAAACACTTATAACTTATTAGATGTAAATATCTTATATAGTGTATTTAAAATGGGCCAAGGACGCTTTGCTCTAACTCTTTTGATAAAGACATTTCTATCCTTACACTCACATCATTCCTTACTTTTTTAGGTACCTTTTGTTTTAATTTAATTAAGACACATAATTTATAAAACAACGTCAATTCCAACCAAATCTTTCATCTTATAAACTAGGCATAAACTAATGTGAATGCAACAAATATGGGTATATAGATTCAATAAAAGTTGGTTCAAAACTAATTTTGATATAATTATTTTTGACATAGTTCATCTCATTTTGATTTTTTTTTTGACATATTCTCTTAATATCTGTGGATTGCAAATATTTATTTAATATGTGTTTTAATAATCTAATTCATCTTTCTTTTTTTTTTAAAAAAAAATAGAGATTGAAAAAAAAAGAGATTGAAAAATAATTAAATTAAGTCAACAAGAGCTTAGTTCAACTGACACCTGTATGTACCTGTGGACAAGAGGTTCCAGGTTCAACTTACCACCCTCACATCTATTACAATACATTTACAAATATGGGTCCCCACGACCAACTCAGGTAGACTCCGTTATGACTTCGATGGCCAACTCAACTAAGTCATGTACCCGTCCCCGACTTTGTCAAGTCTTTTCTACTTTATTTTTGTCGATACTTTTCCTCCTACCATATTTTTTTATATTATTTTTTAAAATAACATTATCAAAAAAATTGTTGTTTTTGTTATTATTATATTATATATTTCTTCATATTCATACTTCAGTATGTGTCGTTGTGCTCCTTAGTTTTACAACAAGACTAATATAATTTAGTGAAAGGAAATAATTTGAATTTGACAATTAAAATTTCTACTTTTAGAAAACAATTAAACCCAATTGGTTGAATTTTTCGAGGTGAATTTAATATTTAAAAATAATTAAAAGGAATTAGTTTTAAAAATACTATTAAAATTTGAGTAATTATAATGTATACAATTTTAAAAATAATAATTCATAAATACCAATTTTTGTTAGTGTTGGGTTTCTATTATTGATATAATTTTTATGAAAAAAACTATTACATAAGCTAATACTTCTCACTGCAATACAACTCTCATAAAATTTTAAGAATTTACGGAAATAGGCTACAGTCTACACCGATAATAAAATCACAAAAATCAAATAAAATTGAAAAAAAAAATGCTCTCAATTAGATTTGTTTCAAATGTAAATTTACCTCTAAATTGTTTGGATTATTTCGTTACCTACTTAATATTAAAATTCAAAATTATTTTATCTAAAAATAATAAATATTCAATATTTTTCTAATACAAAATCTTGGTAAAATTTCGATTGTTTAATTATATAAAGCTTCAGTTGGATGTTACTTGATACGTAATAAACGGTTTGTGTATTTGTTTTGACAAAACTTTTCAAAGTAGTTATTAAGGTGTCTTCAATCTTCACTTACTCTTCCGTATGTGAAAACGACTTGTGTTATCTCTTCCAAAGTAGAGGTAAGGCAATTTCAAATAAATACATGCACAAAGCTCCATTCAAATGTTGGGAGTTCATTACAGTTATTTAACTTTATCATAATGGTAAAAGAGTTATATGATTCTCTTTTGACAATCTCTTTAAATGTGTAACTGCATCTTTGTCACTTAAACAATACTTTTTAAACAGAGATTTCTCTCTTAAATATTGGAAATTCTATTTGCTATAATTGAGATATAATTTTAAAGTTATTTATATAAAAACAATATTATTAAAAAAAATTCTAATACAGAATCTTTGAAAGATATAATTTTTAAATCAAAATATAATATAAAAAACGAACATTATGTTCTATGTAGCTTTTGTTTAGAAAGTGTATTGGTATTTAATATATAAACGATAGTTTAAGATTTAATAAAATGAAAATGAAAATCATTCAATTAATTTGAAGAAAAAGATAATCATTCAACCAATTTCAGAAAGTTTTTCTTTGGGAGGCAAAATCAATTTATAGAAGGTTTATACAAATAAAAATTAGATTAAAAACTAACATCTCCACAAATTACTTTATCGGTGGTGATCTCATCGACGACTACTTGAGGGTTACATAATAGAAGAGCAGAGGAAGACGGTGAAAGAGGGCATGACATAAGAAACACAGACACACACACACAACCAAAGAGGCCCAAGAAAAGATTGACAATGGGTCTAGTGGAGGTAACATTTCAACTAAAAAAAGATGCCAATATATAGATCTATATTCCGAGGGTTAAAACATATTTACGAAAAGTCCAAATCTTAAATAAAAAGTGTTTGCAAGGTATGAGGAGGGCGACAGTGGGGAGTGGAGAGAAGAGAGGAAATTAGCTAAGAGATGAGGGCGGAAACGTGAAAGGAGAAACAAAAAAGAGGAGGAAGGAATGAATTTAGAAAGCAGTGTGCTCAATACATGACTTTCTCAGCATATCATACATGATTTAATATGAAATCGTGTATCAAGTAAGCACACGACTTTTATATACAATTTCACAATCCTTTTCTTCAATACCTTCGCCTCAACCCTATGCCTATTTTTGTGTGAATAACTACAAAAATAACATTATTTTTTTTAAAAAAATATTTATTGCTTAATTTGTTAATGAGTTACGATTATATAAGGTTTTCATAATTGTAATCTTTGATTTCACACATTTAACATCTTTTATTGCATAGGAGAGATAACAATATTGGAAGGAATCACATAAACTCCCCTCCCTTTGATTTCAATCTCACTCTCCCCTTTGCCCTCTCCCTGCTTCACGCTCTTGCCGCTCCGCCATCTCTCTCCGTTCAGCGCCACCGCCGCCTCCTACCGGTATTCTCTCGATCTCCATCTATGTCGTTAGAACTTGTGTAACGAAAGAAACTTATCGGAACAATCTCACCATATAGTTGGGTTTGATGTTAATATCGAATGCTGCTCTGATTTTCTTGGTTGAGAATCGATTCTGTCTTGGACTGTAAATTTGATTCTGGTCCATTATCATATACCAATAATATCGGTTCGCACGATCCCAAATTGAGTGGAGAAAACCCTATTCTGCCATTCGCTTTTGCTGTTGTCATACATATCAGTCTTGTTCTTTCTTTAACCTATCATTCTCAGATTATTGTTTCACTCCTAACTCTAATCTTTTATGTTGAACATTTTTTACGCCATAGGAGTTGCATTCATTGAATTCAAGTTGTTTTCGTTTAGTTAGAGGGAGCCAATATGTTTTTCCACATAGTTCTGGAGAGGAATATGCAGCTACATCCACGCCACTTTGGCCGTAACCTACGTGAGAACCTGGTGTCCAAACTAATGAAAGATGTTGAGGGCACCTGCAGGTTTGTTAACTGTGTTTCCTACCTAATTGTACGCTAGAAAATTCATGTTGCTGTTATTTTCTTTTTGTTAATTTTGGAGAAAATATCTTGCGATAAGATGAATGGCTAGACTTGATCTTGGATTATGAAGTTGTTGGGTGGCATCCCATTAGCTTTATTTCACGGCTGTCCATTATATGATTGCTTTCATTCTAGTTAGCTTTTCCTCGTAGTACTTTTAATGGATGATTCAATAATGTTCAAACATATTGTTAATATGTTTATAGAGAGGGTTTGGACATCTGAGAAACATGTGAGAAAAGATAGTTATTTTAATAGACATCTCAGGTTTTTACATTAGTTGTTTAAATAGACATTCAACTCCCATTGAATCAATGCAACATCCAAGATCCAATGGGGTGATGACAGAGTCCGAAGAAGTTCGTATTACTAATTGGGCCATTGACGTTGGTGGTAAAATATTAGCTGATGGTGGTTTAAACCTTGTTTCGCTGCATTTTTCTTGTGTTGTATGATATCACATAATTCTATTATGATGCATATGCATGTCAGTTCGTCATTATATGTCAAAATAGCATGTTATGTTCATTTTCTTGTGTTGTATGATATCACATAATTCTATTATGATGCTTATGCATGTCAGTTCGTCATTATATGTCAAAATAGCATGTCAGTTCATGAACATATGAAAGTAAATAAAAATAGTTTGACGGATGATATTTCTTTTGAATGTTTGATACTTTGTTCAACTAGTGAGTGGTTAGAGGGGTTCATTATTGAAAAACTTTTATATGTTGTCACAGCGGCCGACATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGGACTGGCTTTGTCACTTTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTAGAAGCGGTTGTTACTATGGTAAACAAGGTAAGTATATGTCACTTTCTTGCTGTCTAGAAAGTAAAAAATTATTTTAAAAAATTAAAACATTAATAATTGCAACTATTGTAGATGGGCTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATGTGAGTACATATTTGTAGCTCATTTCAGTTATCGCTTTTTTCCTCTTTGGCTCACTTTGATGTTACATGCCACCAAGTATCTTGAAGCTTCATTTATGAAACAATTCCTTACCAAATATATGTGGGGTGGGACAACATGGTAGTGATGGTTAAAGTGGTTCCTTATGCCAATGAAACTTTTGTCATGTTGTCCACAAAATTGTGAAATGCATATTTAGTGAGAACTAGAAAAGTAATATGAAAAAGTGGATTGTAAAAGTATTAAGAGAGATTCAGAAATTTGTTATGAAGGCTGTAACTGGTTCACTGTGCAGTTAAGTATTTAAGCAAACTAACACTTTCTCAAGTTTCTAGCTTGTTGTTTTGATATTTCTCAGCGTTGTTGTGCCATGTTAAATCAGATCAGCATGCTGGCTTATCCATGAGATACAAATTTTTTCTTAGCAATACAAACTCATGTATATTATGCTCAGCAACCCTATAACAAAATTTTCATTTCCAAGCTTTTCATACGGCAAATTCTATCTCTGTCTTGACTTCAAGCAACCATTATTTTATTTGTAATAAATTTATTTCCTAGCTTTCCAAGATGTTTGGCTGACGATCAATACCAAAGTACCAAATCTAAATGGTTCAAACACCTCCTACTTGAATTTACTCCCACCAAACTGAATTTGCAGCACCAACATCTTGGCTTTTATTCCTTTTATATATTATTATTATCCTATGAATGTGCTTAACCTTCACTAAACCCAACTCACATCTTGTGTTTCAGTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGATCGGTATATTTCTATTTTACATGCATTCTCTAGCATAGACTCATAATGCTCTCTTGATGTGTTAAATTTACTGAATTATCTCTGTTCTCTTGTAGGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGCACACGAGTAGATGCAACTGAAATTGTATTGCCTTCTCTTCCTTATTTAGTATTGTTTTTCTAAAATTTATTTGCTCTGTCCTTTGATGGTGCAAGTTAGTGCAAGTTAATTTTTCTTTTCTAGCAAATATACTTTGCCTTCATTCTTACCATTTTAAAATCAAAGGATGCCTTTGGTAGCAAAGGGTCTAAAGGTCCCTAAGTTTTTAAAATTCTGAGTAATTTAAAACGTCTTCCCTTTTATCTCAGTTGTGGAGTGGGTGTTATGTTGATATTTTAATGACAGAAAAGATATAAAATATATATATATGTATATATTAGCCTGACCTGAATGATAGTTTTGAGATTCTTTTTAACTTTTTACAAGAAAGTTGAAAAGTTTAGTTGATCTATTTAGCACATATTCTCCCAAGTGGTGAGAATGCTCAAAACTTAGGAACTCCACGTTAGTTGTTTTTGTGACTTTGATAGAATCTGTATGCCACTATCAAATTCTGGAATCTGGCGTCTCATTTAACTATTATTTTGCTTGCAGTTTTGTATTGGAACCATAAAAGATGACTTCTTGGGTGTGATCAATGACCCTTCAGCTGCTTAG

mRNA sequence

ATGGCGGAAATTACCAACAGAGAGGAAGAGGTCGCATTTGATGCGAAGCGGAAACCTACTGATTCTTGCTTCCAACCCAAAGAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGTGGTTGAGGGTGAAGAATCCTGTAATTATGTGAAGAACAATGCTGAGAATGGTGACCATAAGGGAAGTGATGAACAGATTGATAATATTTCTTCTACGGTTCTGGAAGGGAAGGGTGACGATGGAGTTGATGGAGTTGATGGAGCTGATGGAGCTAACGACGACGACGATGAAGATTCCAGTGATGATGGAAGCGAATTGGATTCTGAAGAGAGCGATTTGTCGGATGATCCACTTGCGGAGGTCGATTTGGACAACATCCTTCCTGCAAGGACGAGGAGGCGAACGGTTCACCCTGGAGTTTATTTCGCTACGGATCTGGGGAACGCCGACGATGATAGCAAACTTCGTTTGGATGCTAATACAAAAGAATGTAGGAGAGATAACAATATTGGAAGGAATCACATAAACTCCCCTCCCTTTGATTTCAATCTCACTCTCCCCTTTGCCCTCTCCCTGCTTCACGCTCTTGCCGCTCCGCCATCTCTCTCCGTTCAGCGCCACCGCCGCCTCCTACCGTTAGAGGGAGCCAATATGTTTTTCCACATAGTTCTGGAGAGGAATATGCAGCTACATCCACGCCACTTTGGCCGTAACCTACGTGAGAACCTGGTGTCCAAACTAATGAAAGATGTTGAGGGCACCTGCAGCGGCCGACATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGGACTGGCTTTGTCACTTTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTAGAAGCGGTTGTTACTATGGTAAACAAGATGGGCTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGATCGGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGCACACGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAAGATGACTTCTTGGGTGTGATCAATGACCCTTCAGCTGCTTAG

Coding sequence (CDS)

ATGGCGGAAATTACCAACAGAGAGGAAGAGGTCGCATTTGATGCGAAGCGGAAACCTACTGATTCTTGCTTCCAACCCAAAGAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGTGGTTGAGGGTGAAGAATCCTGTAATTATGTGAAGAACAATGCTGAGAATGGTGACCATAAGGGAAGTGATGAACAGATTGATAATATTTCTTCTACGGTTCTGGAAGGGAAGGGTGACGATGGAGTTGATGGAGTTGATGGAGCTGATGGAGCTAACGACGACGACGATGAAGATTCCAGTGATGATGGAAGCGAATTGGATTCTGAAGAGAGCGATTTGTCGGATGATCCACTTGCGGAGGTCGATTTGGACAACATCCTTCCTGCAAGGACGAGGAGGCGAACGGTTCACCCTGGAGTTTATTTCGCTACGGATCTGGGGAACGCCGACGATGATAGCAAACTTCGTTTGGATGCTAATACAAAAGAATGTAGGAGAGATAACAATATTGGAAGGAATCACATAAACTCCCCTCCCTTTGATTTCAATCTCACTCTCCCCTTTGCCCTCTCCCTGCTTCACGCTCTTGCCGCTCCGCCATCTCTCTCCGTTCAGCGCCACCGCCGCCTCCTACCGTTAGAGGGAGCCAATATGTTTTTCCACATAGTTCTGGAGAGGAATATGCAGCTACATCCACGCCACTTTGGCCGTAACCTACGTGAGAACCTGGTGTCCAAACTAATGAAAGATGTTGAGGGCACCTGCAGCGGCCGACATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGGACTGGCTTTGTCACTTTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTAGAAGCGGTTGTTACTATGGTAAACAAGATGGGCTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGATCGGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGCACACGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAAGATGACTTCTTGGGTGTGATCAATGACCCTTCAGCTGCTTAG

Protein sequence

MAEITNREEEVAFDAKRKPTDSCFQPKEERSNKIQKLEVVEGEESCNYVKNNAENGDHKGSDEQIDNISSTVLEGKGDDGVDGVDGADGANDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPARTRRRTVHPGVYFATDLGNADDDSKLRLDANTKECRRDNNIGRNHINSPPFDFNLTLPFALSLLHALAAPPSLSVQRHRRLLPLEGANMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA*

Homology

[Close]

BLAST of ChyUNG226870 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 2.4e-95
Identity = 169/174 (97.13%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MFFHIVLERNMQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 337 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 391
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174

[Close]

BLAST of ChyUNG226870 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 7.3e-92
Identity = 163/176 (92.61%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 337 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 393
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of ChyUNG226870 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.7e-53
Identity = 94/172 (54.65%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 337 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 388
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of ChyUNG226870 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.7e-53
Identity = 95/172 (55.23%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 337 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 388
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of ChyUNG226870 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.7e-53
Identity = 94/172 (54.65%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 337 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 388
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of ChyUNG226870 vs. ExPASy TrEMBL
Match: A0A5A7VKC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002220 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 1.4e-101
Identity = 194/218 (88.99%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 175 NSPPFDFNLTLPFALSLLHALAAPPSLSVQRHRRLLPLEGANMFFHIVLERNMQLHPRHF 234
           N   F FNLTL FAL LL A AAPPSLSVQRHRRLLP+   +    + L     LHPRHF
Sbjct: 80  NFSAFSFNLTLSFALFLLDAFAAPPSLSVQRHRRLLPVFSRSP--SMSLFTTTHLHPRHF 139

Query: 235 GRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFR 294
           GRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFR
Sbjct: 140 GRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFR 199

Query: 295 PFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK 354
           PFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
Sbjct: 200 PFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK 259

Query: 355 DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 393
           DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 260 DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 295

[Close]

BLAST of ChyUNG226870 vs. ExPASy TrEMBL
Match: A0A0A0KPS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 337 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 393
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of ChyUNG226870 vs. ExPASy TrEMBL
Match: A0A6J1FGH6 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445199 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 1.5e-95
Identity = 177/202 (87.62%), Postives = 184/202 (91.09%), Query Frame = 0


Query: 191 LLHALAAPPSLSVQRHRRLLPLEGANMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDV 250
           LL  L     ++         ++GA MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDV
Sbjct: 47  LLRILVTKTMIAATAMLETRKVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDV 106

Query: 251 EGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNK 310
           EGTCSGRHGFVVAITGIENIGKGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNK
Sbjct: 107 EGTCSGRHGFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNK 166

Query: 311 MGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDAT 370
           MGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDAT
Sbjct: 167 MGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDAT 226

Query: 371 EIFCIGTIKDDFLGVINDPSAA 393
           EIFCIGTIKDDFLGVINDP+AA
Sbjct: 227 EIFCIGTIKDDFLGVINDPAAA 248

[Close]

BLAST of ChyUNG226870 vs. ExPASy TrEMBL
Match: A0A6J1JSG6 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111487136 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 5.6e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 337 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 393
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of ChyUNG226870 vs. ExPASy TrEMBL
Match: A0A6J1E6V3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111431229 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 5.6e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 337 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 393
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of ChyUNG226870 vs. NCBI nr
Match: KAA0066205.1 (hypothetical protein E6C27_scaffold21G002220 [Cucumis melo var. makuwa])

HSP 1 Score: 379 bits (972), Expect = 2.07e-127
Identity = 193/218 (88.53%), Postives = 196/218 (89.91%), Query Frame = 0


Query: 175 NSPPFDFNLTLPFALSLLHALAAPPSLSVQRHRRLLPLEGANMFFHIVLERNMQLHPRHF 234
           N   F FNLTL FAL LL A AAPPSLSVQRHRRLLP+   +    +       LHPRHF
Sbjct: 80  NFSAFSFNLTLSFALFLLDAFAAPPSLSVQRHRRLLPVFSRSPSMSLFT--TTHLHPRHF 139

Query: 235 GRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFR 294
           GRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFR
Sbjct: 140 GRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFR 199

Query: 295 PFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK 354
           PFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK
Sbjct: 200 PFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQK 259

Query: 355 DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 392
           DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 260 DSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 295

[Close]

BLAST of ChyUNG226870 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362 bits (929), Expect = 1.25e-122
Identity = 176/181 (97.24%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 212 LEGANMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIG 271
           ++GA MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIG
Sbjct: 1   VKGATMFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIG 60

Query: 272 KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPD 331
           KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPD
Sbjct: 61  KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPD 120

Query: 332 DMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA 391
           DMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+A
Sbjct: 121 DMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 180

[Close]

BLAST of ChyUNG226870 vs. NCBI nr
Match: KAG6579070.1 (hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 363 bits (933), Expect = 5.02e-122
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 210 LPLEGANMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN 269
           LP++GA MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN
Sbjct: 78  LPVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN 137

Query: 270 IGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLI 329
           IGKGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLI
Sbjct: 138 IGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLI 197

Query: 330 PDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 389
           PDDMEFQSGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP
Sbjct: 198 PDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 257

Query: 390 SAA 392
           +AA
Sbjct: 258 AAA 260

[Close]

BLAST of ChyUNG226870 vs. NCBI nr
Match: XP_004150740.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011655125.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_031742310.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >KGN50884.1 hypothetical protein Csa_023096 [Cucumis sativus])

HSP 1 Score: 359 bits (922), Expect = 1.21e-121
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 337 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 392
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of ChyUNG226870 vs. NCBI nr
Match: XP_038906688.1 (DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906690.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida])

HSP 1 Score: 358 bits (919), Expect = 3.45e-121
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 337 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 392
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of ChyUNG226870 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 339.0 bits (868), Expect = 5.2e-93
Identity = 163/176 (92.61%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 336
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 337 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 393
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of ChyUNG226870 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 77.0 bits (188), Expect = 3.7e-14
Identity = 43/132 (32.58%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 259 GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 318
           G+ VA+T ++ IG+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 319 PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCIG 378
           P++    ++    D ++  G+ P +     S +IQ ++ VR+ +IG +      E   + 
Sbjct: 107 PIENVYLSYTKMPDYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALA 166

Query: 379 TIKDDFLGVIND 389
           +++ D+LG +++
Sbjct: 167 SLEGDYLGPLSE 177

[Close]

BLAST of ChyUNG226870 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 76.6 bits (187), Expect = 4.8e-14
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 259 GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 318
           G+++  T +ENIG+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 319 PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCIG 378
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 379 TIKDDFLG 385
           +I  D LG
Sbjct: 166 SIDGDNLG 172

[Close]

BLAST of ChyUNG226870 vs. TAIR 10
Match: AT1G12830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 39778 Blast hits to 22088 proteins in 1060 species: Archae - 152; Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants - 2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-07
Identity = 69/221 (31.22%), Postives = 99/221 (44.80%), Query Frame = 0


Query: 1   MAEITNREEEVAFDAKRKPTDSCFQPKEERSNKIQKLEVVEGEESCNYVKNNAENGDHKG 60
           MA++ N+++  +F  KRK +D   Q ++  +NK QKL       S N   + +++G+  G
Sbjct: 1   MADVENQQDS-SFPVKRK-SDLFCQDQDNVTNKAQKL-----NPSLNSADSESKDGETNG 60

Query: 61  SDEQIDNISSTVLEGKG--------------DDGVDGVDGADGANDD------------- 120
           S  QI+N++S+  E  G              + GV G  GA+   +D             
Sbjct: 61  SG-QIENLNSSTEETIGAESSVLSEKAAEEVESGVIGDVGAEEEQEDEEDEEEDDEEEEE 120

Query: 121 ----------------------------DDEDSSDDGSE----LDSEESDLSDDPLAEVD 159
                                       DDED SDD  +     + +ESD SDDPLAEVD
Sbjct: 121 EEEVVDRKGKGISREDKGKGKMIEVEESDDEDDSDDDEDDEGFDEDDESDFSDDPLAEVD 180

[Close]

BLAST of ChyUNG226870 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 44.3 bits (103), Expect = 2.7e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 217 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 276
           MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 277 DGTGFVTFPVKYQCVVFRPFKGEILEA 304
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:

BLAST of ChyUNG226870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	2.4e-95	97.13	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	7.3e-92	92.61	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q5E9B8	6.7e-53	54.65	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	6.7e-53	55.23	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]
P62487	6.7e-53	54.65	DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE...	[more]

BLAST of ChyUNG226870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKC6	1.4e-101	88.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KPS4	1.1e-95	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1	[more]
A0A6J1FGH6	1.5e-95	87.62	DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1JSG6	5.6e-95	98.86	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E6V3	5.6e-95	98.86	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of ChyUNG226870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066205.1	2.07e-127	88.53	hypothetical protein E6C27_scaffold21G002220 [Cucumis melo var. makuwa]	[more]
KAG7032688.1	1.25e-122	97.24	hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6579070.1	5.02e-122	96.17	hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004150740.1	1.21e-121	100.00	DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011...	[more]
XP_038906688.1	3.45e-121	99.43	DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 ...	[more]

BLAST of ChyUNG226870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	5.2e-93	92.61	DNA-directed RNA polymerase II	[more]
AT4G14660.1	3.7e-14	32.58	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT3G22900.1	4.8e-14	34.38	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT1G12830.1	1.5e-07	31.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G06790.2	2.7e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 224..280 e-value: 2.2E-12 score: 47.0
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 294..372 e-value: 6.9E-16 score: 58.4
None	No IPR available	GENE3D	2.40.50.140		coord: 297..387 e-value: 3.8E-36 score: 125.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..116
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 206..392
None	No IPR available	CDD	cd04462	S1_RNAPII_Rpb7	coord: 297..384 e-value: 5.6509E-45 score: 148.178
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 218..297 e-value: 1.25769E-40 score: 136.543
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 216..296 e-value: 1.3E-27 score: 97.9
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 217..294
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 206..392
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 295..385

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ChyUNG226870.1	ChyUNG226870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0003676	nucleic acid binding