Chy9G169960 (gene) Cucumber (hystrix) v1

Overview
NameChy9G169960
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionCox19-like CHCH family protein
LocationchrH09: 14820612 .. 14821131 (+)
RNA-Seq ExpressionChy9G169960
SyntenyChy9G169960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAACCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCTTTCGATCAAGAGAAATGCTACCGTCTCCTTAATTCTTTGCGTGAATGCGTGCTCAGCAAGGTATTTCAGTCATTCCTTATCTTTAATTTGCCCTAACCCTTCATCATTTGTTTTCGTGGGTTCTTGTTATTAATTAGTATTGTTGTTTTGGGAATTTTCGAATTTGGTCATCTAGCTCTCTTAATCGAAGTTCGATTGTCGTTCTTCGAATTGTGAATTAATTTGTCGTTTTACTTTTAGGTTTAGTGAAATGGAAATAGATTCAAGTGGATTTTGGTTTATTGCTGATGATTAAGGTATTCATCGAACATGTGGGGAGATATTGATTTGAATTTCTGTTTCTGATGTTATTTTCTTTGGTTTGTTGTTGCTTCAATAGAAAGTGAAGAAATTCTCTCTGGCTGAAGAAGAACAAACAAAACCAATAATCAAGAAGAATGCTTGA

mRNA sequence

ATGGATGAACCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCTTTCGATCAAGAGAAATGCTACCGTCTCCTTAATTCTTTGCGTGAATGCGTGCTCAGCAAGAAAGTGAAGAAATTCTCTCTGGCTGAAGAAGAACAAACAAAACCAATAATCAAGAAGAATGCTTGA

Coding sequence (CDS)

ATGGATGAACCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCTTTCGATCAAGAGAAATGCTACCGTCTCCTTAATTCTTTGCGTGAATGCGTGCTCAGCAAGAAAGTGAAGAAATTCTCTCTGGCTGAAGAAGAACAAACAAAACCAATAATCAAGAAGAATGCTTGA

Protein sequence

MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEEQTKPIIKKNA*
Homology
BLAST of Chy9G169960 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.0e-28
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLL+SLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 67
          IIKKNA
Sbjct: 61 IIKKNA 66

BLAST of Chy9G169960 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.3e-27
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQ+KCYRLL+SLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 67
          I+KKN+
Sbjct: 61 IVKKNS 66

BLAST of Chy9G169960 vs. ExPASy TrEMBL
Match: A0A5J4ZSA8 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_011592 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-17
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0

Query: 1  MDEPQ-PQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEE--Q 60
          MD+ Q PQPVCAQEALNLLNCVTESPFDQ+KC RLL+SLR+CV SKKVKKFSLAE++  +
Sbjct: 1  MDQGQPPQPVCAQEALNLLNCVTESPFDQDKCLRLLHSLRDCVQSKKVKKFSLAEQKGGE 60

Query: 61 TKPIIKKN 66
            PI KK+
Sbjct: 61 ADPISKKH 68

BLAST of Chy9G169960 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.8e-17
Identity = 45/56 (80.36%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEE 57
          MDE + +PVCAQEAL+LLNCVT+SPFDQEKC +LLNSLRECVL+KKVKKFSLA++E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

BLAST of Chy9G169960 vs. ExPASy TrEMBL
Match: M5WP14 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G114300 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEEQ--T 60
          M++ + + VC QEAL+LLNCVT+SPFDQEKC RLLNSLRECVL+KKVKKFSLA++EQ   
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPIIKK 65
          KPI KK
Sbjct: 61 KPIDKK 66

BLAST of Chy9G169960 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus])

HSP 1 Score: 131 bits (330), Expect = 1.93e-38
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLL+SLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 66
          IIKKNA
Sbjct: 61 IIKKNA 66

BLAST of Chy9G169960 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 2.26e-37
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQ+KCYRLL+SLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 66
          I+KKN+
Sbjct: 61 IVKKNS 66

BLAST of Chy9G169960 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (259), Expect = 1.32e-27
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEEQTKP 60
          MD+ Q QPVCAQEAL+LLNCVT+SPFDQEKCYRLL+SLRECVLSKKVKKFSLA+EE+ K 
Sbjct: 1  MDDAQAQPVCAQEALDLLNCVTDSPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKR 60

Query: 61 IIKKN 65
            KK+
Sbjct: 61 SGKKS 65

BLAST of Chy9G169960 vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 1.27e-24
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEEQTKP 60
          M EP+ QPVCAQEAL+LLNCVTESPFDQ+KCYRLL+SLRECV+SKK   FSLA+EEQTK 
Sbjct: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVISKK---FSLADEEQTKQ 72

Query: 61 IIKKNA 66
          +  KNA
Sbjct: 73 M--KNA 73

BLAST of Chy9G169960 vs. NCBI nr
Match: KAA8520919.1 (hypothetical protein F0562_011592 [Nyssa sinensis])

HSP 1 Score: 95.9 bits (237), Expect = 3.26e-24
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0

Query: 1  MDEPQP-QPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEE--Q 60
          MD+ QP QPVCAQEALNLLNCVTESPFDQ+KC RLL+SLR+CV SKKVKKFSLAE++  +
Sbjct: 1  MDQGQPPQPVCAQEALNLLNCVTESPFDQDKCLRLLHSLRDCVQSKKVKKFSLAEQKGGE 60

Query: 61 TKPIIKKN 65
            PI KK+
Sbjct: 61 ADPISKKH 68

BLAST of Chy9G169960 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-17
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLNSLRECVLSKKVKKFSLAEEE 57
           M++   QP+C QEAL LLNCV ESPFDQEKC R L SLRECVLSKKVKKFS+  ++
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQD 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQS75.0e-2898.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1[more]
A0A5D3C4E23.3e-2793.94Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5J4ZSA83.1e-1775.00Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_011592 PE=4 SV=1[more]
A0A7J7CJI76.8e-1780.36Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 ... [more]
M5WP142.0e-1672.73Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G114300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN50036.11.93e-3898.48hypothetical protein Csa_000619 [Cucumis sativus][more]
KAA0042698.12.26e-3793.94Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like... [more]
KAG6606053.11.32e-2780.00hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7017003.11.27e-2477.27hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA8520919.13.26e-2475.00hypothetical protein F0562_011592 [Nyssa sinensis][more]
Match NameE-valueIdentityDescription
AT4G23760.12.3e-1769.64Cox19-like CHCH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1130CytochromE C oxidase copper chaperonecoord: 5..65
e-value: 5.5E-6
score: 28.3
NoneNo IPR availablePANTHERPTHR37750COX19-LIKE CHCH FAMILY PROTEINcoord: 1..59
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 7..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy9G169960.1Chy9G169960.1mRNA