Chy9G169710 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G169710
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	40S ribosomal protein S10-1
Location	chrH09: 14576762 .. 14578388 (+)
RNA-Seq Expression	Chy9G169710
Synteny	Chy9G169710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGGCCGAGACCCGTAACCGATAATAAAAATAAATGGGCCGAAAAGCCCATAAGTAATCCATTCATTCGATGGTTTATAAGTCAAAGTTTCAGAGATTTAGGGCTTTACGCTGTGAAGGAAGATTGTGAAAGGGTTTCTCTCTTAGCTGCCGCTTCTTCCTGCCGCCGCCGTCCTCACCTTCGTCAAAATGGTACGTCCTTTTTCCTATCTCCACACATTTTAGGCTATAAATTATTCGTTTGTTCAACTAGAGACCAAAGGAAAATGTTAGTGAAAATTGAATTAGCGATAAGTAGTTGTTAATTCCGTCAAAAGCTCGTTGATTTGAGCCGTTTATCAATGTGTTTGGTTGGATTTGGATGAGGAGTGAGATCTGGATGCCACTAGTCTTACTGACCTGAACTCTGAAATGTGAAATGTTCTAATTTTGTTGTATATGATCTTAATCGACCCTCGACTGGGAGTAAGTTTGTTTAAACGATATGAGTGTTTACCTTTTTAGATCATTCCAGAGAAGAATCGCAAAGAAATTTCCAAGTACCTCTTTCAAGGTATTGAATTTTTCTGTCGTCTGTGTTTGATGTTTTTAGGGTTTTTTTTTGTTCATCTTCGTCCGGTTATTGATTGTTGGATTGTTGTTGTTTCGTATCAGAGGGAGTTTGCTATGCCAAGAAGGACTACAATCTGGCCAAGCATCCGGAAATCGATGTGCCAAATTTGCAAGTGATTAAGCTGATGCAGAGCTTTAAATCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACAAACGATGGCATTGAGTTTTTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCTGCTACTTTGAAGAAACAAGCTAAGCCCGCTGGTCGACCATTTGGTGGCCCATCTGGAGACCGCCCACGGTAAATCTTCTGCTCTTCTTTTGATGATTTCCTCCCCTTTGCTTATTGGTTTTTGCTGGGTTTTACTTTTAGCTTGTTGAGTTTACTCTGTATTAATGCTTTCTTGTTGTATAATTGTCAGTTCTAAATGTAGTCTATAACTGCTATGACTAGATTGGATTCATAAATTTATCCTTTTACATTGATATTACCGTACTACTGATTCTACACTCTACTGGTCTTTGAGTTGGTTTGTAGTTTGATTCTGATTGTTCATCAATCCTTATTCAATTTTTTTGCACTTTTTAGTGGTCCTTCAAGATTTGATGGAGAAAGAAGATTTGGTGACCGAGATGGCTACCGTGGAGGTCCTCGTGGGCCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCATTTGGGGTATGCAATTTTACCACTCTTACTATTTTCGAGTTTTTGTTATTCATATGTTCAAATTAGATTTGCACATTGCAACTGCTACGGATTGGTTGATCTTTACATTTCTAACATTAGTTACAGCTTTCTCTCCCAGTTGAGGATAGCAAAATTAATGGCCTTTTAATTGATCTATGTTCGTTCTTCAATATTGTAGGGTCCTGGCGGAAGACCTGGCTTTGGCCGTGGAGCTGGTGGCTATGGGGGAGCACCTGCACCATCAAATCTTGAATGA

mRNA sequence

ATGATTGGGCCGAGACCCGTAACCGATAATAAAAATAAATGGGCCGAAAAGCCCATAAGTAATCCATTCATTCGATGGTTTATAAGTCAAAGTTTCAGAGATTTAGGGCTTTACGCTGTGAAGGAAGATTGTGAAAGGGTTTCTCTCTTAGCTGCCGCTTCTTCCTGCCGCCGCCGTCCTCACCTTCGTCAAAATGAGGGAGTTTGCTATGCCAAGAAGGACTACAATCTGGCCAAGCATCCGGAAATCGATGTGCCAAATTTGCAAGTGATTAAGCTGATGCAGAGCTTTAAATCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACAAACGATGGCATTGAGTTTTTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCTGCTACTTTGAAGAAACAAGCTAAGCCCGCTGGTCGACCATTTGGTGGCCCATCTGGAGACCGCCCACGTGGTCCTTCAAGATTTGATGGAGAAAGAAGATTTGGTGACCGAGATGGCTACCGTGGAGGTCCTCGTGGGCCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCATTTGGGGGTCCTGGCGGAAGACCTGGCTTTGGCCGTGGAGCTGGTGGCTATGGGGGAGCACCTGCACCATCAAATCTTGAATGA

Coding sequence (CDS)

ATGATTGGGCCGAGACCCGTAACCGATAATAAAAATAAATGGGCCGAAAAGCCCATAAGTAATCCATTCATTCGATGGTTTATAAGTCAAAGTTTCAGAGATTTAGGGCTTTACGCTGTGAAGGAAGATTGTGAAAGGGTTTCTCTCTTAGCTGCCGCTTCTTCCTGCCGCCGCCGTCCTCACCTTCGTCAAAATGAGGGAGTTTGCTATGCCAAGAAGGACTACAATCTGGCCAAGCATCCGGAAATCGATGTGCCAAATTTGCAAGTGATTAAGCTGATGCAGAGCTTTAAATCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACAAACGATGGCATTGAGTTTTTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCTGCTACTTTGAAGAAACAAGCTAAGCCCGCTGGTCGACCATTTGGTGGCCCATCTGGAGACCGCCCACGTGGTCCTTCAAGATTTGATGGAGAAAGAAGATTTGGTGACCGAGATGGCTACCGTGGAGGTCCTCGTGGGCCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCATTTGGGGGTCCTGGCGGAAGACCTGGCTTTGGCCGTGGAGCTGGTGGCTATGGGGGAGCACCTGCACCATCAAATCTTGAATGA

Protein sequence

MIGPRPVTDNKNKWAEKPISNPFIRWFISQSFRDLGLYAVKEDCERVSLLAAASSCRRRPHLRQNEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE*

Homology

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BLAST of Chy9G169710 vs. ExPASy Swiss-Prot
Match: Q9SW09 (40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 9.0e-66
Identity = 132/160 (82.50%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GIEFLR
Sbjct: 18  EGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER-RFGDRDGYRGGPRGPG 185
           TYLNLPS++VPATLKK AKP GRPFGGP GDR RGP R DG+R RFGDRDGYRGGPR  G
Sbjct: 78  TYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPR--G 137

Query: 186 GDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 225
           GD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 138 GD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 172

[Close]

BLAST of Chy9G169710 vs. ExPASy Swiss-Prot
Match: P0DKK8 (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 9.0e-66
Identity = 131/166 (78.92%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W +YYWYLTNDGIE LR
Sbjct: 18  EGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFG-GPSGDRPRGPSRFDGER-RFGDRDGYRGGPRGP 185
            YLNLPSEIVPATLKK A+P GRPFG GP GDRPRGP RF+G+R RFGDRDGYRGGPRG 
Sbjct: 78  NYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGA 137

Query: 186 GGDF-GDKGGAPADYRPSFGGPGGRPGFGR-GAGGYGGAPAPSNLE 228
            GDF G+KGGAPA+++PSF   GGRPGFGR G GG+G  P  S++E
Sbjct: 138 PGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSSSME 183

[Close]

BLAST of Chy9G169710 vs. ExPASy Swiss-Prot
Match: P0DKK9 (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 9.0e-66
Identity = 131/166 (78.92%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W +YYWYLTNDGIE LR
Sbjct: 18  EGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFG-GPSGDRPRGPSRFDGER-RFGDRDGYRGGPRGP 185
            YLNLPSEIVPATLKK A+P GRPFG GP GDRPRGP RF+G+R RFGDRDGYRGGPRG 
Sbjct: 78  NYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGA 137

Query: 186 GGDF-GDKGGAPADYRPSFGGPGGRPGFGR-GAGGYGGAPAPSNLE 228
            GDF G+KGGAPA+++PSF   GGRPGFGR G GG+G  P  S++E
Sbjct: 138 PGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSSSME 183

[Close]

BLAST of Chy9G169710 vs. ExPASy Swiss-Prot
Match: Q9FFS8 (40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 7.1e-63
Identity = 130/164 (79.27%), Postives = 143/164 (87.20%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFL 125
           EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GI+FL
Sbjct: 18  EGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFL 77

Query: 126 RTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPG 185
           RTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGP R DGERRFGDRDGYRGGP+  G
Sbjct: 78  RTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGERRFGDRDGYRGGPKS-G 137

Query: 186 GDFGDKGGAPADYRPSF-GGPGG-RPGFGRGAGGYGGAPAPSNL 227
           G++GDK GAPADY+P F GG GG R GFGRGAGG+GG  A S+L
Sbjct: 138 GEYGDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGSDL 179

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BLAST of Chy9G169710 vs. ExPASy Swiss-Prot
Match: Q9LTF2 (40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2)

HSP 1 Score: 238.4 bits (607), Expect = 7.8e-62
Identity = 127/160 (79.38%), Postives = 136/160 (85.00%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GIEFLR
Sbjct: 18  EGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER-RFGDRDGYRGGPRGPG 185
           TYLNLPS++VPATLKK AKP GRPFGGP GDR RGP    G+R RFGDRDGYR GPR  G
Sbjct: 78  TYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGG 137

Query: 186 GDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 225
              G+KGGAPADY+PSF G G   GFGRGAGGY  A APS
Sbjct: 138 EFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAA-APS 174

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BLAST of Chy9G169710 vs. ExPASy TrEMBL
Match: A0A5A7TIX3 (40S ribosomal protein S10-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002270 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.5e-87
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR
Sbjct: 18  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 185
           TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG
Sbjct: 78  TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 137

Query: 186 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 228
           DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 138 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Chy9G169710 vs. ExPASy TrEMBL
Match: A0A0A0KK65 (S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152800 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.5e-87
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR
Sbjct: 18  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 185
           TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG
Sbjct: 78  TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 137

Query: 186 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 228
           DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 138 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Chy9G169710 vs. ExPASy TrEMBL
Match: A0A6J1DW67 (transcription factor MYB39-like OS=Momordica charantia OX=3673 GN=LOC111024953 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.3e-87
Identity = 165/180 (91.67%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 48  SLLAAASSCRRRPHLRQNEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETF 107
           SL+ +  + R        EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETF
Sbjct: 322 SLIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETF 381

Query: 108 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGE 167
           AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGE
Sbjct: 382 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGE 441

Query: 168 RRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 227
           RRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 442 RRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 501

[Close]

BLAST of Chy9G169710 vs. ExPASy TrEMBL
Match: A0A6J1ESX8 (40S ribosomal protein S10-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435712 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.1e-86
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR
Sbjct: 18  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 185
           TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRG GG
Sbjct: 78  TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGAGG 137

Query: 186 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 228
           DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 138 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Chy9G169710 vs. ExPASy TrEMBL
Match: A0A1S4DSB0 (40S ribosomal protein S10-1 OS=Cucumis melo OX=3656 GN=LOC103483069 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.1e-86
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR
Sbjct: 18  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 185
           TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGG RGPGG
Sbjct: 78  TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGSRGPGG 137

Query: 186 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 228
           DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 138 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Chy9G169710 vs. NCBI nr
Match: KAG7016989.1 (40S ribosomal protein S10-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347 bits (891), Expect = 1.28e-118
Identity = 184/232 (79.31%), Postives = 185/232 (79.74%), Query Frame = 0


Query: 37  LYAVKEDCERVSLLAAASSCRRRPHLRQN------------------------------- 96
           LYA KEDCERVSLLAAA+S  RR  LRQN                               
Sbjct: 10  LYAGKEDCERVSLLAAAASSCRRRSLRQNVVNLVEGSFIRTVHQCVWLVFDWDWIISEKN 69

Query: 97  ----------EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWY 156
                     EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWY
Sbjct: 70  RREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWY 129

Query: 157 LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDG 216
           LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDG
Sbjct: 130 LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDG 189

Query: 217 YRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 227
           YRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 190 YRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 241

[Close]

BLAST of Chy9G169710 vs. NCBI nr
Match: XP_011654726.1 (40S ribosomal protein S10-1 [Cucumis sativus] >KAA0042728.1 40S ribosomal protein S10-1 [Cucumis melo var. makuwa] >KGN50065.1 hypothetical protein Csa_000371 [Cucumis sativus])

HSP 1 Score: 331 bits (848), Expect = 5.16e-113
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR
Sbjct: 18  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 185
           TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG
Sbjct: 78  TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 137

Query: 186 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 227
           DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 138 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Chy9G169710 vs. NCBI nr
Match: XP_023549574.1 (40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >KAG6579529.1 40S ribosomal protein S10-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 328 bits (840), Expect = 8.54e-112
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR
Sbjct: 18  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 185
           TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRG GG
Sbjct: 78  TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGSGG 137

Query: 186 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 227
           DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 138 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Chy9G169710 vs. NCBI nr
Match: XP_016898887.1 (PREDICTED: 40S ribosomal protein S10-1 [Cucumis melo])

HSP 1 Score: 328 bits (840), Expect = 8.54e-112
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR
Sbjct: 18  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 185
           TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGG RGPGG
Sbjct: 78  TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGSRGPGG 137

Query: 186 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 227
           DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 138 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Chy9G169710 vs. NCBI nr
Match: XP_038907155.1 (40S ribosomal protein S10-1-like [Benincasa hispida])

HSP 1 Score: 328 bits (840), Expect = 8.54e-112
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR
Sbjct: 18  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 185
           TYLNLPSEIVPATLKKQAKPAGR FGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG
Sbjct: 78  TYLNLPSEIVPATLKKQAKPAGRSFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 137

Query: 186 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 227
           DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 138 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of Chy9G169710 vs. TAIR 10
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 251.5 bits (641), Expect = 6.4e-67
Identity = 132/160 (82.50%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GIEFLR
Sbjct: 18  EGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER-RFGDRDGYRGGPRGPG 185
           TYLNLPS++VPATLKK AKP GRPFGGP GDR RGP R DG+R RFGDRDGYRGGPR  G
Sbjct: 78  TYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPR--G 137

Query: 186 GDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 225
           GD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 138 GD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 172

[Close]

BLAST of Chy9G169710 vs. TAIR 10
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 241.9 bits (616), Expect = 5.0e-64
Identity = 130/164 (79.27%), Postives = 143/164 (87.20%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFL 125
           EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GI+FL
Sbjct: 18  EGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFL 77

Query: 126 RTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPG 185
           RTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGP R DGERRFGDRDGYRGGP+  G
Sbjct: 78  RTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGERRFGDRDGYRGGPKS-G 137

Query: 186 GDFGDKGGAPADYRPSF-GGPGG-RPGFGRGAGGYGGAPAPSNL 227
           G++GDK GAPADY+P F GG GG R GFGRGAGG+GG  A S+L
Sbjct: 138 GEYGDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGSDL 179

[Close]

BLAST of Chy9G169710 vs. TAIR 10
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 238.4 bits (607), Expect = 5.6e-63
Identity = 127/160 (79.38%), Postives = 136/160 (85.00%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GIEFLR
Sbjct: 18  EGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER-RFGDRDGYRGGPRGPG 185
           TYLNLPS++VPATLKK AKP GRPFGGP GDR RGP    G+R RFGDRDGYR GPR  G
Sbjct: 78  TYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGG 137

Query: 186 GDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 225
              G+KGGAPADY+PSF G G   GFGRGAGGY  A APS
Sbjct: 138 EFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAA-APS 174

[Close]

BLAST of Chy9G169710 vs. TAIR 10
Match: AT5G41520.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 203.0 bits (515), Expect = 2.6e-52
Identity = 109/135 (80.74%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 94  MQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP 153
           MQSFKSKEYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG 
Sbjct: 1   MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG- 60

Query: 154 SGDRPRGPSRFDGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSF-GGPGG-RPGFG 213
            GDRPRGP R DGERRFGDRDGYRGGP+  GG++GDK GAPADY+P F GG GG R GFG
Sbjct: 61  GGDRPRGPPRGDGERRFGDRDGYRGGPKS-GGEYGDKAGAPADYQPGFRGGAGGARQGFG 120

Query: 214 RGAGGYGGAPAPSNL 227
           RGAGG+GG  A S+L
Sbjct: 121 RGAGGFGGGAAGSDL 133

[Close]

BLAST of Chy9G169710 vs. TAIR 10
Match: AT4G25740.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 201.4 bits (511), Expect = 7.5e-52
Identity = 109/159 (68.55%), Postives = 118/159 (74.21%), Query Frame = 0


Query: 66  EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLR 125
           EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTN+GIEFLR
Sbjct: 18  EGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLR 77

Query: 126 TYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGG 185
           TYLNLPS++VPATLKK AKP GRPFGGP                              GG
Sbjct: 78  TYLNLPSDVVPATLKKSAKPGGRPFGGPR-----------------------------GG 137

Query: 186 DFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 225
           D  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 138 D--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 144

The following BLAST results are available for this feature:

BLAST of Chy9G169710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SW09	9.0e-66	82.50	40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1	[more]
P0DKK8	9.0e-66	78.92	40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 ...	[more]
P0DKK9	9.0e-66	78.92	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 ...	[more]
Q9FFS8	7.1e-63	79.27	40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1	[more]
Q9LTF2	7.8e-62	79.38	40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2	[more]

BLAST of Chy9G169710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIX3	2.5e-87	100.00	40S ribosomal protein S10-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A0A0KK65	2.5e-87	100.00	S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152800...	[more]
A0A6J1DW67	3.3e-87	91.67	transcription factor MYB39-like OS=Momordica charantia OX=3673 GN=LOC111024953 P...	[more]
A0A6J1ESX8	2.1e-86	99.38	40S ribosomal protein S10-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435712 P...	[more]
A0A1S4DSB0	2.1e-86	99.38	40S ribosomal protein S10-1 OS=Cucumis melo OX=3656 GN=LOC103483069 PE=4 SV=1	[more]

BLAST of Chy9G169710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016989.1	1.28e-118	79.31	40S ribosomal protein S10-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_011654726.1	5.16e-113	100.00	40S ribosomal protein S10-1 [Cucumis sativus] >KAA0042728.1 40S ribosomal protei...	[more]
XP_023549574.1	8.54e-112	99.38	40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >KAG6579529.1 40S ...	[more]
XP_016898887.1	8.54e-112	99.38	PREDICTED: 40S ribosomal protein S10-1 [Cucumis melo]	[more]
XP_038907155.1	8.54e-112	99.38	40S ribosomal protein S10-1-like [Benincasa hispida]	[more]

BLAST of Chy9G169710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25740.1	6.4e-67	82.50	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.1	5.0e-64	79.27	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G52650.1	5.6e-63	79.38	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.2	2.6e-52	80.74	RNA binding Plectin/S10 domain-containing protein	[more]
AT4G25740.2	7.5e-52	68.55	RNA binding Plectin/S10 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 57..152 e-value: 1.4E-39 score: 136.1
IPR005326	Plectin/S10, N-terminal	PFAM	PF03501	S10_plectin	coord: 65..142 e-value: 1.4E-36 score: 124.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..227
None	No IPR available	PANTHER	PTHR12146:SF20	40S RIBOSOMAL PROTEIN S10-1-LIKE	coord: 66..226
IPR037447	40S Ribosomal protein S10	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 66..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G169710.1	Chy9G169710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome