Chy9G168830 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G168830
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	polyadenylate-binding protein-interacting protein 12
Location	chrH09: 13879626 .. 13880012 (-)
RNA-Seq Expression	Chy9G168830
Synteny	Chy9G168830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTCAGATGCAGAACGGCTTTGAAACTGATCCCCAGTCGTTAATGGTGAACTCTGCTTCTGCTTATGGGATGAATCAGAGGCCTAACGGTGTCATTAATGGAGCCGATGGAGGGAACACCTTTAAGAGAGATATGAGGGATCTGGAGGAGTTACTATCCAAATTGAATCCCATGACTGAGGAATTTGTCCCTCCTTCACTAGCCAAAAACTCTTCTGGTTACTTCACCGGTGCTGGCCTTGGGTATACTAACGACTTTCTATTGCAACCTAATTCTGTCAACAACGAAGGGAATAATAGTCGAAGGAAGAAGAATGGTTTTAGTCAAGGGAGACGAAGGATGAATAATAAGATGAATGCAGTGAAGGGAAGAGCTACTTAA

mRNA sequence

ATGGGTGGTCAGATGCAGAACGGCTTTGAAACTGATCCCCAGTCGTTAATGGTGAACTCTGCTTCTGCTTATGGGATGAATCAGAGGCCTAACGGTGTCATTAATGGAGCCGATGGAGGGAACACCTTTAAGAGAGATATGAGGGATCTGGAGGAGTTACTATCCAAATTGAATCCCATGACTGAGGAATTTGTCCCTCCTTCACTAGCCAAAAACTCTTCTGGTTACTTCACCGGTGCTGGCCTTGGGTATACTAACGACTTTCTATTGCAACCTAATTCTGTCAACAACGAAGGGAATAATAGTCGAAGGAAGAAGAATGGTTTTAGTCAAGGGAGACGAAGGATGAATAATAAGATGAATGCAGTGAAGGGAAGAGCTACTTAA

Coding sequence (CDS)

ATGGGTGGTCAGATGCAGAACGGCTTTGAAACTGATCCCCAGTCGTTAATGGTGAACTCTGCTTCTGCTTATGGGATGAATCAGAGGCCTAACGGTGTCATTAATGGAGCCGATGGAGGGAACACCTTTAAGAGAGATATGAGGGATCTGGAGGAGTTACTATCCAAATTGAATCCCATGACTGAGGAATTTGTCCCTCCTTCACTAGCCAAAAACTCTTCTGGTTACTTCACCGGTGCTGGCCTTGGGTATACTAACGACTTTCTATTGCAACCTAATTCTGTCAACAACGAAGGGAATAATAGTCGAAGGAAGAAGAATGGTTTTAGTCAAGGGAGACGAAGGATGAATAATAAGATGAATGCAGTGAAGGGAAGAGCTACTTAA

Protein sequence

MGGQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPMTEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKMNAVKGRAT*

Homology

[Close]

BLAST of Chy9G168830 vs. ExPASy Swiss-Prot
Match: Q9LPI5 (Polyadenylate-binding protein-interacting protein 11 OS=Arabidopsis thaliana OX=3702 GN=CID11 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-14
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 35  NGADGGNTFKRDMRDLEELLSKLNPMTEEFVPPSLAKN-----SSGYFTGAGLGYTND-F 94
           +G DGG +FKRDMR+L+EL SKLNPM EEFVPPSL K      + G+FT AG  + N+ F
Sbjct: 71  DGVDGGESFKRDMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGF 130

Query: 95  LLQPNSVNNEGNNSRRKKNGFSQGRRRMN 118
               N      N   R+K  F QG+RRMN
Sbjct: 131 AGTGNGGYGNENGGFRRKKSFGQGKRRMN 159

[Close]

BLAST of Chy9G168830 vs. ExPASy Swiss-Prot
Match: Q9S7N9 (Polyadenylate-binding protein-interacting protein 12 OS=Arabidopsis thaliana OX=3702 GN=CID12 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.5e-14
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 37  ADGGNTFKRDMRDLEELLSKLNPMTEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVN 96
           +DGG +FKRDMR+L ELLSKLNPM +EF+PPSL K     F G      N F+   N   
Sbjct: 56  SDGGESFKRDMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFPV 115

Query: 97  NEGNNSRRKKNGFSQGRRRMN 118
           NE  + RRKK+   QG+RRMN
Sbjct: 116 NEDGSFRRKKSFGQQGKRRMN 136

[Close]

BLAST of Chy9G168830 vs. ExPASy Swiss-Prot
Match: Q9SG10 (Polyadenylate-binding protein-interacting protein 10 OS=Arabidopsis thaliana OX=3702 GN=CID10 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-09
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 46  DMRDLEELLSKLNPMTEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRK 105
           +++DL +  SKLNPM +EFVPPSLA++ SG     GLG+TN+F   P   +   +  RR+
Sbjct: 86  EIKDLADAFSKLNPMAQEFVPPSLARSQSGVLRN-GLGFTNNFAAPPKLADGNDHFPRRR 145

Query: 106 KNGFSQGRRRMNNK 120
           ++ F QG+RRMN +
Sbjct: 146 RS-FGQGKRRMNKR 157

[Close]

BLAST of Chy9G168830 vs. ExPASy TrEMBL
Match: A0A5D3BZR3 (Polyadenylate-binding protein-interacting protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00260 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.6e-60
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MGGQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPM 60
           MGGQMQNGFET+PQSLMVNSASAYGMNQRPNGVINGADGG+TFKRDMRDLEELLSKLNPM
Sbjct: 88  MGGQMQNGFETNPQSLMVNSASAYGMNQRPNGVINGADGGDTFKRDMRDLEELLSKLNPM 147

Query: 61  TEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 120
            EEFVPPSLAKN SGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM
Sbjct: 148 AEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 207

Query: 121 NAVK 125
           NAVK
Sbjct: 208 NAVK 211

[Close]

BLAST of Chy9G168830 vs. ExPASy TrEMBL
Match: A0A0A0KZ10 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G090360 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.6e-60
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MGGQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPM 60
           MGGQMQNGFET+PQSLMVNSASAYGMNQRPNGVINGADGG+TFKRDMRDLEELLSKLNPM
Sbjct: 88  MGGQMQNGFETNPQSLMVNSASAYGMNQRPNGVINGADGGDTFKRDMRDLEELLSKLNPM 147

Query: 61  TEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 120
            EEFVPPSLAKN SGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM
Sbjct: 148 AEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 207

Query: 121 NAVK 125
           NAVK
Sbjct: 208 NAVK 211

[Close]

BLAST of Chy9G168830 vs. ExPASy TrEMBL
Match: A0A1S3CI01 (polyadenylate-binding protein-interacting protein 12 OS=Cucumis melo OX=3656 GN=LOC103501175 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.6e-60
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MGGQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPM 60
           MGGQMQNGFET+PQSLMVNSASAYGMNQRPNGVINGADGG+TFKRDMRDLEELLSKLNPM
Sbjct: 88  MGGQMQNGFETNPQSLMVNSASAYGMNQRPNGVINGADGGDTFKRDMRDLEELLSKLNPM 147

Query: 61  TEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 120
            EEFVPPSLAKN SGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM
Sbjct: 148 AEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 207

Query: 121 NAVK 125
           NAVK
Sbjct: 208 NAVK 211

[Close]

BLAST of Chy9G168830 vs. ExPASy TrEMBL
Match: A0A5A7UT39 (Polyadenylate-binding protein-interacting protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001930 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.8e-59
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MGGQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPM 60
           MGGQMQNGFET+PQSLMVNSASAYG+NQRPNGVINGADGG+TFKRDMRDLEELLSKLNPM
Sbjct: 88  MGGQMQNGFETNPQSLMVNSASAYGINQRPNGVINGADGGDTFKRDMRDLEELLSKLNPM 147

Query: 61  TEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 120
            EEFVPPSLAKN SGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM
Sbjct: 148 AEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 207

Query: 121 NAVK 125
           NAVK
Sbjct: 208 NAVK 211

[Close]

BLAST of Chy9G168830 vs. ExPASy TrEMBL
Match: A0A6J1E992 (polyadenylate-binding protein-interacting protein 12 OS=Cucurbita moschata OX=3662 GN=LOC111430559 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 106/122 (86.89%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 3   GQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPMTE 62
           GQMQNGFET+ QSLMV SA+AYGMNQRPNGVINGADGG  FKRDMRDLE+LLSKLNPM E
Sbjct: 89  GQMQNGFETNAQSLMVKSAAAYGMNQRPNGVINGADGGENFKRDMRDLEDLLSKLNPMAE 148

Query: 63  EFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKMNA 122
           EFVPPSLAKN SGYF GA LGYTNDFLLQ NS+NNEGNN+RRKKNGFSQGRR+ NNKMNA
Sbjct: 149 EFVPPSLAKNFSGYFGGAALGYTNDFLLQANSLNNEGNNNRRKKNGFSQGRRKTNNKMNA 208

Query: 123 VK 125
           VK
Sbjct: 209 VK 210

[Close]

BLAST of Chy9G168830 vs. NCBI nr
Match: XP_008462907.1 (PREDICTED: polyadenylate-binding protein-interacting protein 12 [Cucumis melo])

HSP 1 Score: 238 bits (606), Expect = 7.55e-75
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MGGQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPM 60
           MGGQMQNGFET+PQSLMVNSASAYGMNQRPNGVINGADGG+TFKRDMRDLEELLSKLNPM
Sbjct: 88  MGGQMQNGFETNPQSLMVNSASAYGMNQRPNGVINGADGGDTFKRDMRDLEELLSKLNPM 147

Query: 61  TEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 120
            EEFVPPSLAKN SGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM
Sbjct: 148 AEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 207

Query: 121 NAVK 124
           NAVK
Sbjct: 208 NAVK 211

[Close]

BLAST of Chy9G168830 vs. NCBI nr
Match: TYK04620.1 (polyadenylate-binding protein-interacting protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (606), Expect = 7.55e-75
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MGGQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPM 60
           MGGQMQNGFET+PQSLMVNSASAYGMNQRPNGVINGADGG+TFKRDMRDLEELLSKLNPM
Sbjct: 88  MGGQMQNGFETNPQSLMVNSASAYGMNQRPNGVINGADGGDTFKRDMRDLEELLSKLNPM 147

Query: 61  TEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 120
            EEFVPPSLAKN SGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM
Sbjct: 148 AEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 207

Query: 121 NAVK 124
           NAVK
Sbjct: 208 NAVK 211

[Close]

BLAST of Chy9G168830 vs. NCBI nr
Match: XP_004137206.1 (polyadenylate-binding protein-interacting protein 12 [Cucumis sativus] >XP_011653324.1 polyadenylate-binding protein-interacting protein 12 [Cucumis sativus] >KGN53617.1 hypothetical protein Csa_014431 [Cucumis sativus])

HSP 1 Score: 238 bits (606), Expect = 7.55e-75
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MGGQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPM 60
           MGGQMQNGFET+PQSLMVNSASAYGMNQRPNGVINGADGG+TFKRDMRDLEELLSKLNPM
Sbjct: 88  MGGQMQNGFETNPQSLMVNSASAYGMNQRPNGVINGADGGDTFKRDMRDLEELLSKLNPM 147

Query: 61  TEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 120
            EEFVPPSLAKN SGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM
Sbjct: 148 AEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 207

Query: 121 NAVK 124
           NAVK
Sbjct: 208 NAVK 211

[Close]

BLAST of Chy9G168830 vs. NCBI nr
Match: KAA0056661.1 (polyadenylate-binding protein-interacting protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 236 bits (602), Expect = 5.99e-74
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MGGQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPM 60
           MGGQMQNGFET+PQSLMVNSASAYG+NQRPNGVINGADGG+TFKRDMRDLEELLSKLNPM
Sbjct: 88  MGGQMQNGFETNPQSLMVNSASAYGINQRPNGVINGADGGDTFKRDMRDLEELLSKLNPM 147

Query: 61  TEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 120
            EEFVPPSLAKN SGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM
Sbjct: 148 AEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKM 207

Query: 121 NAVK 124
           NAVK
Sbjct: 208 NAVK 211

[Close]

BLAST of Chy9G168830 vs. NCBI nr
Match: XP_038900938.1 (polyadenylate-binding protein-interacting protein 12 [Benincasa hispida])

HSP 1 Score: 219 bits (557), Expect = 1.75e-67
Identity = 112/122 (91.80%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 3   GQMQNGFETDPQSLMVNSASAYGMNQRPNGVINGADGGNTFKRDMRDLEELLSKLNPMTE 62
           GQMQNGFET+ QSLMV SAS YGMNQRPNGVINGADGG+TFKRDMRDLEELLSKLNPM E
Sbjct: 89  GQMQNGFETNGQSLMVKSASGYGMNQRPNGVINGADGGDTFKRDMRDLEELLSKLNPMAE 148

Query: 63  EFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKKNGFSQGRRRMNNKMNA 122
           EFVPPSLAKN SGYF GAGLGYT+DFLLQ NSVNNEGNNSRRKKNGFSQGRRRMNNKMNA
Sbjct: 149 EFVPPSLAKNFSGYFGGAGLGYTSDFLLQANSVNNEGNNSRRKKNGFSQGRRRMNNKMNA 208

Query: 123 VK 124
           VK
Sbjct: 209 VK 210

[Close]

BLAST of Chy9G168830 vs. TAIR 10
Match: AT1G32790.1 (CTC-interacting domain 11 )

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-15
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 35  NGADGGNTFKRDMRDLEELLSKLNPMTEEFVPPSLAKN-----SSGYFTGAGLGYTND-F 94
           +G DGG +FKRDMR+L+EL SKLNPM EEFVPPSL K      + G+FT AG  + N+ F
Sbjct: 71  DGVDGGESFKRDMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGF 130

Query: 95  LLQPNSVNNEGNNSRRKKNGFSQGRRRMN 118
               N      N   R+K  F QG+RRMN
Sbjct: 131 AGTGNGGYGNENGGFRRKKSFGQGKRRMN 159

[Close]

BLAST of Chy9G168830 vs. TAIR 10
Match: AT1G32790.2 (CTC-interacting domain 11 )

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-15
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 35  NGADGGNTFKRDMRDLEELLSKLNPMTEEFVPPSLAKN-----SSGYFTGAGLGYTND-F 94
           +G DGG +FKRDMR+L+EL SKLNPM EEFVPPSL K      + G+FT AG  + N+ F
Sbjct: 71  DGVDGGESFKRDMRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGF 130

Query: 95  LLQPNSVNNEGNNSRRKKNGFSQGRRRMN 118
               N      N   R+K  F QG+RRMN
Sbjct: 131 AGTGNGGYGNENGGFRRKKSFGQGKRRMN 159

[Close]

BLAST of Chy9G168830 vs. TAIR 10
Match: AT4G10610.1 (CTC-interacting domain 12 )

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-15
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 37  ADGGNTFKRDMRDLEELLSKLNPMTEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVN 96
           +DGG +FKRDMR+L ELLSKLNPM +EF+PPSL K     F G      N F+   N   
Sbjct: 56  SDGGESFKRDMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFPV 115

Query: 97  NEGNNSRRKKNGFSQGRRRMN 118
           NE  + RRKK+   QG+RRMN
Sbjct: 116 NEDGSFRRKKSFGQQGKRRMN 136

[Close]

BLAST of Chy9G168830 vs. TAIR 10
Match: AT4G10610.2 (CTC-interacting domain 12 )

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-15
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 37  ADGGNTFKRDMRDLEELLSKLNPMTEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVN 96
           +DGG +FKRDMR+L ELLSKLNPM +EF+PPSL K     F G      N F+   N   
Sbjct: 56  SDGGESFKRDMRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGNFPV 115

Query: 97  NEGNNSRRKKNGFSQGRRRMN 118
           NE  + RRKK+   QG+RRMN
Sbjct: 116 NEDGSFRRKKSFGQQGKRRMN 136

[Close]

BLAST of Chy9G168830 vs. TAIR 10
Match: AT3G49390.1 (CTC-interacting domain 10 )

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 46  DMRDLEELLSKLNPMTEEFVPPSLAKNSSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRK 105
           +++DL +  SKLNPM +EFVPPSLA++ SG     GLG+TN+F   P   +   +  RR+
Sbjct: 86  EIKDLADAFSKLNPMAQEFVPPSLARSQSGVLRN-GLGFTNNFAAPPKLADGNDHFPRRR 145

Query: 106 KNGFSQGRRRMNNK 120
           ++ F QG+RRMN +
Sbjct: 146 RS-FGQGKRRMNKR 157

The following BLAST results are available for this feature:

BLAST of Chy9G168830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LPI5	3.4e-14	51.69	Polyadenylate-binding protein-interacting protein 11 OS=Arabidopsis thaliana OX=...	[more]
Q9S7N9	4.5e-14	53.09	Polyadenylate-binding protein-interacting protein 12 OS=Arabidopsis thaliana OX=...	[more]
Q9SG10	2.0e-09	45.95	Polyadenylate-binding protein-interacting protein 10 OS=Arabidopsis thaliana OX=...	[more]

BLAST of Chy9G168830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZR3	9.6e-60	96.77	Polyadenylate-binding protein-interacting protein 12 OS=Cucumis melo var. makuwa...	[more]
A0A0A0KZ10	9.6e-60	96.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G090360 PE=4 SV=1	[more]
A0A1S3CI01	9.6e-60	96.77	polyadenylate-binding protein-interacting protein 12 OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7UT39	2.8e-59	95.97	Polyadenylate-binding protein-interacting protein 12 OS=Cucumis melo var. makuwa...	[more]
A0A6J1E992	2.8e-51	86.89	polyadenylate-binding protein-interacting protein 12 OS=Cucurbita moschata OX=36...	[more]

BLAST of Chy9G168830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462907.1	7.55e-75	96.77	PREDICTED: polyadenylate-binding protein-interacting protein 12 [Cucumis melo]	[more]
TYK04620.1	7.55e-75	96.77	polyadenylate-binding protein-interacting protein 12 [Cucumis melo var. makuwa]	[more]
XP_004137206.1	7.55e-75	96.77	polyadenylate-binding protein-interacting protein 12 [Cucumis sativus] >XP_01165...	[more]
KAA0056661.1	5.99e-74	95.97	polyadenylate-binding protein-interacting protein 12 [Cucumis melo var. makuwa]	[more]
XP_038900938.1	1.75e-67	91.80	polyadenylate-binding protein-interacting protein 12 [Benincasa hispida]	[more]

BLAST of Chy9G168830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32790.1	2.4e-15	51.69	CTC-interacting domain 11	[more]
AT1G32790.2	2.4e-15	51.69	CTC-interacting domain 11	[more]
AT4G10610.1	3.2e-15	53.09	CTC-interacting domain 12	[more]
AT4G10610.2	3.2e-15	53.09	CTC-interacting domain 12	[more]
AT3G49390.1	1.4e-10	45.95	CTC-interacting domain 10	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..106
None	No IPR available	PANTHER	PTHR32343:SF36	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE	coord: 3..122
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 3..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G168830.1	Chy9G168830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding