Chy9G167040 (gene) Cucumber (hystrix) v1

Overview
NameChy9G167040
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH09: 12547144 .. 12547640 (+)
RNA-Seq ExpressionChy9G167040
SyntenyChy9G167040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCAAGAAGCACTTCTCAAGAATAGTTGCTAATGTGTTGGGTCTTCTGCTTCTTCTCTTCTCCACCACTGTCATCTCAACAAGGCATTTACATGCATCTTCCAATGGTAATTGTTTTTATTTACAATATTTGCAACAAAACATTTATTAATGATATATAAAAAATGTTGTTAATAAAATATGAAAATTTATTTTTAAATATAACAAATAAAATTAGTTATTTTAATGAGCAAATTAAACCCTTTTAAATTACTTCCGATTTTATAAAAAAGAAAAGGAATGTATATTAATTACGGTTTGAATTATGCTAATAATCACAAAAATTTAAGAATGAAGTATACACATATTTATAACTTTAAAAACACAAATTTAATTGTTTTTTTTCTTCTTCTTCTTAAAGAACAACGACGATTAGCTCAGATATCAGTTGATGATCACCCAGGGGAAGAGGGAAGCAGTGGACTATGTGTATATTATCTTAGAGATCATTGA

mRNA sequence

ATGGATTCCAAGAAGCACTTCTCAAGAATAGTTGCTAATGTGTTGGGTCTTCTGCTTCTTCTCTTCTCCACCACTGTCATCTCAACAAGGCATTTACATGCATCTTCCAATGAACAACGACGATTAGCTCAGATATCAGTTGATGATCACCCAGGGGAAGAGGGAAGCAGTGGACTATGTGTATATTATCTTAGAGATCATTGA

Coding sequence (CDS)

ATGGATTCCAAGAAGCACTTCTCAAGAATAGTTGCTAATGTGTTGGGTCTTCTGCTTCTTCTCTTCTCCACCACTGTCATCTCAACAAGGCATTTACATGCATCTTCCAATGAACAACGACGATTAGCTCAGATATCAGTTGATGATCACCCAGGGGAAGAGGGAAGCAGTGGACTATGTGTATATTATCTTAGAGATCATTGA

Protein sequence

MDSKKHFSRIVANVLGLLLLLFSTTVISTRHLHASSNEQRRLAQISVDDHPGEEGSSGLCVYYLRDH*
Homology
[Close]
BLAST of Chy9G167040 vs. ExPASy TrEMBL
Match: A0A5A7UIN4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00360 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-04
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 1  MDSKKHFSRIVANVLGLLLLLFSTTVISTRHLHAS--SNEQRRLAQISVDDHPGEEGSSG 60
          M SKKHFSRIVA VL  LLLLF+TTV S RHL  S  +N QR   Q ++DD P E GS G
Sbjct: 1  MASKKHFSRIVAIVLS-LLLLFTTTVTSKRHLLTSPNANGQRSGTQEALDD-PWEPGSHG 59

[Close]
BLAST of Chy9G167040 vs. NCBI nr
Match: KAA0055110.1 (hypothetical protein E6C27_scaffold231G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 2.77e-07
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 1  MDSKKHFSRIVANVLGLLLLLFSTTVISTRHLHAS--SNEQRRLAQISVDDHPGEEGSSG 59
          M SKKHFSRIVA VL LLL LF+TTV S RHL  S  +N QR   Q ++DD P E GS G
Sbjct: 1  MASKKHFSRIVAIVLSLLL-LFTTTVTSKRHLLTSPNANGQRSGTQEALDD-PWEPGSHG 59

The following BLAST results are available for this feature:
BLAST of Chy9G167040 vs.
Match NameE-valueIdentityDescription
BLAST of Chy9G167040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UIN43.0e-0460.66Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Chy9G167040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0055110.12.77e-0760.66hypothetical protein E6C27_scaffold231G00360 [Cucumis melo var. makuwa][more]
BLAST of Chy9G167040 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy9G167040.1Chy9G167040.1mRNA