Chy9G163720 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G163720
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Long-chain-alcohol oxidase
Location	chrH09: 8483159 .. 8483655 (-)
RNA-Seq Expression	Chy9G163720
Synteny	Chy9G163720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATGAAAATACAGAGCGAGCGAAGATGAGGAGATCTGAATGCCATCCTCTCCTAAGAGGAACAAGAGCCGGTAAGTTCACCCATGGCTTCTCTGTGGCAGAGATGGAGACTTTAACCTTCGTCTACAAAATCGTACTTCCTCCTCTGCCGTTCGATTCACCTACCACCATCGTTGCAGCCTCCGAAAAGGCGTTTTACGAAGTATCCGATTCGCAATCCCCAATTTCTCACGAGGTAAGTTGATTTATCGACTGAATGAACAATTCTTTCATTTTTTTTCCTTCTTTAATTTGATGTTGATTTCAAGAAATTGAAATTAGGTTGCGAAGACGGCGAGGAAGAGAGGATTGATGGGAAATTGTGTTGCTGGTGAGAGTTGTGCTGTGGATTCTGGCTACGAGGTTAGAAAAGTTGTTGCTTTATGGATTGCTTTGTTTTTGCGAGAAATGGCCTTTTGTTTGCAAATTCTCGGAGATGCCATTGAAGAATAA

mRNA sequence

ATGTTCAATGAAAATACAGAGCGAGCGAAGATGAGGAGATCTGAATGCCATCCTCTCCTAAGAGGAACAAGAGCCGGTAAGTTCACCCATGGCTTCTCTGTGGCAGAGATGGAGACTTTAACCTTCGTCTACAAAATCGTACTTCCTCCTCTGCCGTTCGATTCACCTACCACCATCGTTGCAGCCTCCGAAAAGGCGTTTTACGAAGTATCCGATTCGCAATCCCCAATTTCTCACGAGGTTGCGAAGACGGCGAGGAAGAGAGGATTGATGGGAAATTGTGTTGCTGGTGAGAGTTGTGCTGTGGATTCTGGCTACGAGGTTAGAAAAGTTGTTGCTTTATGGATTGCTTTGTTTTTGCGAGAAATGGCCTTTTGTTTGCAAATTCTCGGAGATGCCATTGAAGAATAA

Coding sequence (CDS)

ATGTTCAATGAAAATACAGAGCGAGCGAAGATGAGGAGATCTGAATGCCATCCTCTCCTAAGAGGAACAAGAGCCGGTAAGTTCACCCATGGCTTCTCTGTGGCAGAGATGGAGACTTTAACCTTCGTCTACAAAATCGTACTTCCTCCTCTGCCGTTCGATTCACCTACCACCATCGTTGCAGCCTCCGAAAAGGCGTTTTACGAAGTATCCGATTCGCAATCCCCAATTTCTCACGAGGTTGCGAAGACGGCGAGGAAGAGAGGATTGATGGGAAATTGTGTTGCTGGTGAGAGTTGTGCTGTGGATTCTGGCTACGAGGTTAGAAAAGTTGTTGCTTTATGGATTGCTTTGTTTTTGCGAGAAATGGCCTTTTGTTTGCAAATTCTCGGAGATGCCATTGAAGAATAA

Protein sequence

MFNENTERAKMRRSECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPFDSPTTIVAASEKAFYEVSDSQSPISHEVAKTARKRGLMGNCVAGESCAVDSGYEVRKVVALWIALFLREMAFCLQILGDAIEE*

Homology

[Close]

BLAST of Chy9G163720 vs. ExPASy Swiss-Prot
Match: B5WWZ8 (Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus OX=34305 GN=FAO1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-10
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 13 RSECHPLLRGTRA-GKFTHGFSVAEMETLTFVYKIVLPPLPFDS-----PTTIVAASEKA 72
          R ECHPLLRG R   KF  GFS +EME+L  + +++LPPLP D+        +     + 
Sbjct: 2  RKECHPLLRGGRKDNKFRQGFSSSEMESLASICEVILPPLPMDALKIKKHDDVSIEDVEF 61

Query: 73 FYEVSDSQSPISHEVAKTARKRGLM 92
          F+  S S  PI HEVA+   KR L+
Sbjct: 62 FWNTSASHYPIPHEVAEILSKRSLI 86

[Close]

BLAST of Chy9G163720 vs. ExPASy Swiss-Prot
Match: Q94BP3 (Long-chain-alcohol oxidase FAO4B OS=Arabidopsis thaliana OX=3702 GN=FAO4B PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 27/79 (34.18%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 12 RRSECHPLLRGTRAGK-FTHGFSVAEMETLTFVYKIVLPPLPFDSPTTIVAASEKAFYEV 71
          RR+  HPLLR  + G+ + HGFS +++++L  + +  LPP      TT    +  +F+  
Sbjct: 6  RRNRGHPLLRSKKRGEGYNHGFSPSQIQSLAVICQTFLPP-----ETTSEQQAVNSFHVA 65

Query: 72 SDSQSPISHEVAKTARKRG 90
          S +Q P + EVA+   K G
Sbjct: 66 SSTQPPFTDEVAEMIVKNG 79

[Close]

BLAST of Chy9G163720 vs. ExPASy TrEMBL
Match: A0A5A7U0C1 (Long-chain-alcohol oxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001810 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.4e-23
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 11 MRRSECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPFDSPTTIVAASEKAFYEV 70
          MRRSECHPLLRGTR GKFTHGFS AEME+LT +   VLPPLPF+SPTT  AA E+AFY V
Sbjct: 1  MRRSECHPLLRGTRTGKFTHGFSTAEMESLTSICDTVLPPLPFNSPTTSTAA-ERAFYAV 60

Query: 71 SDSQSPISHEVAKTARKRGLM 92
          S +QSPI  EVA+ ARKRGL+
Sbjct: 61 SGAQSPIPDEVAEMARKRGLI 80

[Close]

BLAST of Chy9G163720 vs. ExPASy TrEMBL
Match: A0A1S3AW60 (Long-chain-alcohol oxidase OS=Cucumis melo OX=3656 GN=LOC103483573 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.9e-22
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 11 MRRSECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPFDSPTTIVAASEKAFYEV 70
          MRRSECHPLLRGTR GKFTH FS AEME+LT +   VLPPLPF+SPTT  AA E+AFY V
Sbjct: 1  MRRSECHPLLRGTRTGKFTHEFSTAEMESLTSICDTVLPPLPFNSPTTSTAA-ERAFYAV 60

Query: 71 SDSQSPISHEVAKTARKRGLM 92
          S +QSPI  EVA+ ARKRGL+
Sbjct: 61 SGAQSPIPDEVAEMARKRGLV 80

[Close]

BLAST of Chy9G163720 vs. ExPASy TrEMBL
Match: A0A6J1IVY9 (Long-chain-alcohol oxidase OS=Cucurbita maxima OX=3661 GN=LOC111479108 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.7e-18
Identity = 53/88 (60.23%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 11 MRRSECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPF--------DSPTTIVAA 70
          MRRSECHPLLRGTR+GKFTHGFSVAEME+L  +   + PPLPF        D   T  AA
Sbjct: 2  MRRSECHPLLRGTRSGKFTHGFSVAEMESLATICDTIFPPLPFGSSNNNGSDEIDTADAA 61

Query: 71 SEKAFYEVSDSQSPISHEVAKTARKRGL 91
          + +AFY  S S+SPI  EVA+T  KRGL
Sbjct: 62 AVEAFYAASGSRSPIPDEVAETVAKRGL 89

[Close]

BLAST of Chy9G163720 vs. ExPASy TrEMBL
Match: A0A6J1D4J5 (Long-chain-alcohol oxidase OS=Momordica charantia OX=3673 GN=LOC111017236 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.7e-17
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 11 MRRS-ECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPFDSP-----TTIVAASE 70
          MRRS +CHPLLRG R+GKF+HGFS AEM++LT + + VLPPLPFD        T  AA+ 
Sbjct: 1  MRRSRQCHPLLRGKRSGKFSHGFSPAEMQSLTSICETVLPPLPFDDSDAGEIDTAEAAAV 60

Query: 71 KAFYEVSDSQSPISHEVAKTARKRGLM 92
          KAFY VS SQSPI  EVA+T  KRGL+
Sbjct: 61 KAFYGVSGSQSPIPDEVAETLGKRGLI 87

[Close]

BLAST of Chy9G163720 vs. ExPASy TrEMBL
Match: A0A6J1EG06 (Long-chain-alcohol oxidase OS=Cucurbita moschata OX=3662 GN=LOC111432173 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 52/88 (59.09%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 11 MRRSECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPF--------DSPTTIVAA 70
          MRR ECHPLLRGTR+GKFTHGFSVAEME+L  +   +LPPLP         D   T  AA
Sbjct: 1  MRRLECHPLLRGTRSGKFTHGFSVAEMESLATICDTILPPLPLGSSNNNGSDEIDTADAA 60

Query: 71 SEKAFYEVSDSQSPISHEVAKTARKRGL 91
          + +AFY  S S+SPI  EVA+T  KRGL
Sbjct: 61 AIEAFYAASGSRSPIPDEVAETVAKRGL 88

[Close]

BLAST of Chy9G163720 vs. NCBI nr
Match: KAA0049232.1 (long-chain-alcohol oxidase FAO1 [Cucumis melo var. makuwa] >TYK17326.1 long-chain-alcohol oxidase FAO1 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 1.08e-27
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 11 MRRSECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPFDSPTTIVAASEKAFYEV 70
          MRRSECHPLLRGTR GKFTHGFS AEME+LT +   VLPPLPF+SPTT  AA E+AFY V
Sbjct: 1  MRRSECHPLLRGTRTGKFTHGFSTAEMESLTSICDTVLPPLPFNSPTTSTAA-ERAFYAV 60

Query: 71 SDSQSPISHEVAKTARKRGLM 91
          S +QSPI  EVA+ ARKRGL+
Sbjct: 61 SGAQSPIPDEVAEMARKRGLI 80

[Close]

BLAST of Chy9G163720 vs. NCBI nr
Match: XP_004134405.1 (long-chain-alcohol oxidase FAO1 [Cucumis sativus] >KGN56872.2 hypothetical protein Csa_010599 [Cucumis sativus])

HSP 1 Score: 118 bits (295), Expect = 1.08e-27
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 11 MRRSECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPFDSPTTIVAASEKAFYEV 70
          MRRSECHPLLRGT  GKFTHGFS AEM+TLT +   +LPPLPF+SPTT   A EKAFY+V
Sbjct: 2  MRRSECHPLLRGTGTGKFTHGFSTAEMDTLTSICDTLLPPLPFNSPTTTTPA-EKAFYQV 61

Query: 71 SDSQSPISHEVAKTARKRGLM 91
          S +QSPI  EVA+TARKRGL+
Sbjct: 62 SGAQSPIPEEVAETARKRGLI 81

[Close]

BLAST of Chy9G163720 vs. NCBI nr
Match: XP_008438494.1 (PREDICTED: long-chain-alcohol oxidase FAO1 [Cucumis melo])

HSP 1 Score: 115 bits (287), Expect = 1.30e-26
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 11 MRRSECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPFDSPTTIVAASEKAFYEV 70
          MRRSECHPLLRGTR GKFTH FS AEME+LT +   VLPPLPF+SPTT  AA E+AFY V
Sbjct: 1  MRRSECHPLLRGTRTGKFTHEFSTAEMESLTSICDTVLPPLPFNSPTTSTAA-ERAFYAV 60

Query: 71 SDSQSPISHEVAKTARKRGLM 91
          S +QSPI  EVA+ ARKRGL+
Sbjct: 61 SGAQSPIPDEVAEMARKRGLV 80

[Close]

BLAST of Chy9G163720 vs. NCBI nr
Match: KAG7018802.1 (Long-chain-alcohol oxidase FAO1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102 bits (254), Expect = 3.55e-22
Identity = 55/91 (60.44%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 8   RAKMRRSECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPFDSPT--------TI 67
           RA MRRSECHPLLRGTR+GKFTHGFSVAEME+L  +   +LPPLP  S          T 
Sbjct: 17  RATMRRSECHPLLRGTRSGKFTHGFSVAEMESLATICDTILPPLPLGSSNNNGSDEIDTA 76

Query: 68  VAASEKAFYEVSDSQSPISHEVAKTARKRGL 90
            AA+ +AFY  S S+SPI  EVA+T  KRGL
Sbjct: 77  DAAAVEAFYAASGSRSPIPDEVAETVAKRGL 107

[Close]

BLAST of Chy9G163720 vs. NCBI nr
Match: XP_038895948.1 (long-chain-alcohol oxidase FAO1 [Benincasa hispida])

HSP 1 Score: 100 bits (250), Expect = 1.27e-21
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 11 MRRSECHPLLRGTRAGKFTHGFSVAEMETLTFVYKIVLPPLPFDSPT---TIVAASEKAF 70
          M+  ECHPLLRGTR+GKF+HGFS AE+ETL  +   +LPPLPFDS     ++ AA+ KAF
Sbjct: 1  MKTMECHPLLRGTRSGKFSHGFSAAEIETLATICDTILPPLPFDSSNNNGSVDAAAVKAF 60

Query: 71 YEVSDSQSPISHEVAKTARKRGLM 91
          Y  S SQS I  EVA+T RKRGL+
Sbjct: 61 YAASGSQSTIPDEVAETVRKRGLI 84

[Close]

BLAST of Chy9G163720 vs. TAIR 10
Match: AT4G28570.1 (Long-chain fatty alcohol dehydrogenase family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 27/79 (34.18%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 12 RRSECHPLLRGTRAGK-FTHGFSVAEMETLTFVYKIVLPPLPFDSPTTIVAASEKAFYEV 71
          RR+  HPLLR  + G+ + HGFS +++++L  + +  LPP      TT    +  +F+  
Sbjct: 6  RRNRGHPLLRSKKRGEGYNHGFSPSQIQSLAVICQTFLPP-----ETTSEQQAVNSFHVA 65

Query: 72 SDSQSPISHEVAKTARKRG 90
          S +Q P + EVA+   K G
Sbjct: 66 SSTQPPFTDEVAEMIVKNG 79

The following BLAST results are available for this feature:

BLAST of Chy9G163720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B5WWZ8	3.2e-10	43.53	Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus OX=34305 GN=FAO1 PE=1 SV=1	[more]
Q94BP3	2.0e-04	34.18	Long-chain-alcohol oxidase FAO4B OS=Arabidopsis thaliana OX=3702 GN=FAO4B PE=2 S...	[more]

BLAST of Chy9G163720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0C1	3.4e-23	74.07	Long-chain-alcohol oxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3AW60	2.9e-22	72.84	Long-chain-alcohol oxidase OS=Cucumis melo OX=3656 GN=LOC103483573 PE=3 SV=1	[more]
A0A6J1IVY9	9.7e-18	60.23	Long-chain-alcohol oxidase OS=Cucurbita maxima OX=3661 GN=LOC111479108 PE=3 SV=1	[more]
A0A6J1D4J5	3.7e-17	62.07	Long-chain-alcohol oxidase OS=Momordica charantia OX=3673 GN=LOC111017236 PE=3 S...	[more]
A0A6J1EG06	1.1e-16	59.09	Long-chain-alcohol oxidase OS=Cucurbita moschata OX=3662 GN=LOC111432173 PE=3 SV...	[more]

BLAST of Chy9G163720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049232.1	1.08e-27	74.07	long-chain-alcohol oxidase FAO1 [Cucumis melo var. makuwa] >TYK17326.1 long-chai...	[more]
XP_004134405.1	1.08e-27	72.84	long-chain-alcohol oxidase FAO1 [Cucumis sativus] >KGN56872.2 hypothetical prote...	[more]
XP_008438494.1	1.30e-26	72.84	PREDICTED: long-chain-alcohol oxidase FAO1 [Cucumis melo]	[more]
KAG7018802.1	3.55e-22	60.44	Long-chain-alcohol oxidase FAO1, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_038895948.1	1.27e-21	60.71	long-chain-alcohol oxidase FAO1 [Benincasa hispida]	[more]

BLAST of Chy9G163720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28570.1	1.4e-05	34.18	Long-chain fatty alcohol dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 130..136
None	No IPR available	PANTHER	PTHR46056	LONG-CHAIN-ALCOHOL OXIDASE	coord: 13..92
None	No IPR available	PANTHER	PTHR46056:SF7	LONG-CHAIN-ALCOHOL OXIDASE	coord: 13..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G163720.1	Chy9G163720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0046577	long-chain-alcohol oxidase activity