Chy9G163540 (gene) Cucumber (hystrix) v1

Overview
NameChy9G163540
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH09: 8155014 .. 8156242 (-)
RNA-Seq ExpressionChy9G163540
SyntenyChy9G163540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCGCCAATTGGATTTGTTACCTTACAAAGTGAACCAAGAATTGCGTATTGATTATAAAGTTTTTGTATCAATTGATTCAAAAGACTTCAAACGTGTTGTTTTGGAAATAAATGCTCATTCAGGTAATTATTTTTATATTCTAACTATATTCTTCCTTTTGAGATCATCCTATCTATGTTATTATTTGATTTGTAATTATAAATTAAGTGTCTTAACTCAATTAAGTTTTGTTGTCTCTCTACTTGTCACAGTTTCTGTTAATTTATCAGATTCAGAAGCCAAGTTTTTTAATGACAATAAGGAGATTATCTTTACCAAAGAGGTACAAATTTTAGGAATTTTTAATTTATTGATTTAATATGGTGTGAGACAAAGGTTCTTAGAAGTAAATTTATTTGATGTTGTGCAGGAAAGGAAATGTATAATTGGAGGTATTAAAAAAGGAAAGGAATATGAAGTTTTAATCACACTTCATCCATCGATGTTTTTTCTTGATTTGAGCTATCAAGCACAAAGATTGTGGTTGTTCATTCAAAAGGATTTCTCAAGTATTCTCGTTTTCCCCTCTGGATTATGGACTCAATTTTGGGTCTATTTCTCTCCTTGAGTACATGTCAATTTTACCAACTTCTTTGTTTTGTGAACAAAAACATTAATCTCTTTTTTCTGTTTCTTTTTTCATTTTTCTTAGTTGGATTCTTAAACTCTTAGCATATAGTAGTCTCTGAAATTTAAAAAAAACAACACTTTGGTATTCGAGGTTAGAAAATAATTCTACATGATCCCTAGGTCAATTTCGCCATTAGTTGACTAATGGAAAATTAGGGTGGCATGCTAAACAATTTTTTATCAAATAAGTTTATTTTTGTTAATTTGTTTCGGTCTCTCCCTCCCACCACTTCCCTTTTTTCTCTTCTTGATGTTCTTGCCATTCATTATGTTCGGTAACCGGCTGAAAATTCTTCATTGCTTTAGTAAGTTAATTTCTTCTTTTAATTACGAGATATTTCAATAAATCTTCCTGGAGATGCAAAGTTAAAAAGAGAAATAAGAATTAATAATAAAAAAGTAAAAAATAAAAACTCAATTGTTCATAGTTTTCTTAGTTATTGATAAAATTCATACCCCTGCAACATTATTTTAGAAACATTCACTCTGTTATGGATTGTAGAGGAAAAGAAGATAAAGGGACAGAAAGCATTAAGCAATTTCCTGAAACCATAA

mRNA sequence

ATGACGCGCCAATTGGATTTGTTACCTTACAAAGTGAACCAAGAATTGCGTATTGATTATAAAGTTTTTGTATCAATTGATTCAAAAGACTTCAAACGTGTTGTTTTGGAAATAAATGCTCATTCAGAGGAAAAGAAGATAAAGGGACAGAAAGCATTAAGCAATTTCCTGAAACCATAA

Coding sequence (CDS)

ATGACGCGCCAATTGGATTTGTTACCTTACAAAGTGAACCAAGAATTGCGTATTGATTATAAAGTTTTTGTATCAATTGATTCAAAAGACTTCAAACGTGTTGTTTTGGAAATAAATGCTCATTCAGAGGAAAAGAAGATAAAGGGACAGAAAGCATTAAGCAATTTCCTGAAACCATAA

Protein sequence

MTRQLDLLPYKVNQELRIDYKVFVSIDSKDFKRVVLEINAHSEEKKIKGQKALSNFLKP*
Homology
[Close]
BLAST of Chy9G163540 vs. ExPASy TrEMBL
Match: A0A0A0KNE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G469020 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 1  MTRQLDLLPYKVNQELRIDYKVFVSIDSKDFKRVVLEINAHS 43
          MTRQL+LLPYKVNQELRIDYK FVSIDSKDFKRVVLEINAHS
Sbjct: 1  MTRQLNLLPYKVNQELRIDYKAFVSIDSKDFKRVVLEINAHS 42

[Close]
BLAST of Chy9G163540 vs. ExPASy TrEMBL
Match: A0A1S4E5E3 (uncharacterized protein LOC103503425 OS=Cucumis melo OX=3656 GN=LOC103503425 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0 

Query: 2   TRQLDLLPYKVNQELRIDYKVFVSIDSKDFKRVVLEINAHSEEKKIK 49
           TRQLD+LPYKV+Q+LRIDYK FVSIDSKDFKRVVLEI+AHS + + K
Sbjct: 118 TRQLDMLPYKVDQQLRIDYKAFVSIDSKDFKRVVLEISAHSSDSEAK 164

[Close]
BLAST of Chy9G163540 vs. ExPASy TrEMBL
Match: A0A6J1L0Z0 (uncharacterized protein LOC111498891 OS=Cucurbita maxima OX=3661 GN=LOC111498891 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.7e-04
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 3   RQLDLLPYKVNQELRIDYKVFVSIDSKDFKRVVLEINAHS 43
           R+LDLLP +V +  +IDY  FVSIDS DF+RV+LE+NA+S
Sbjct: 115 RELDLLPLEVEKIEQIDYGTFVSIDSHDFRRVLLELNAYS 154

[Close]
BLAST of Chy9G163540 vs. NCBI nr
Match: KGN51160.1 (hypothetical protein Csa_008095 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 5.54e-18
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 1  MTRQLDLLPYKVNQELRIDYKVFVSIDSKDFKRVVLEINAHS 42
          MTRQL+LLPYKVNQELRIDYK FVSIDSKDFKRVVLEINAHS
Sbjct: 1  MTRQLNLLPYKVNQELRIDYKAFVSIDSKDFKRVVLEINAHS 42

[Close]
BLAST of Chy9G163540 vs. NCBI nr
Match: XP_016903444.1 (PREDICTED: uncharacterized protein LOC103503425 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 5.33e-15
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0 

Query: 2   TRQLDLLPYKVNQELRIDYKVFVSIDSKDFKRVVLEINAHSEEKKIK 48
           TRQLD+LPYKV+Q+LRIDYK FVSIDSKDFKRVVLEI+AHS + + K
Sbjct: 118 TRQLDMLPYKVDQQLRIDYKAFVSIDSKDFKRVVLEISAHSSDSEAK 164

[Close]
BLAST of Chy9G163540 vs. NCBI nr
Match: XP_023006014.1 (uncharacterized protein LOC111498891 [Cucurbita maxima])

HSP 1 Score: 52.4 bits (124), Expect = 5.57e-06
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 3   RQLDLLPYKVNQELRIDYKVFVSIDSKDFKRVVLEINAHS 42
           R+LDLLP +V +  +IDY  FVSIDS DF+RV+LE+NA+S
Sbjct: 115 RELDLLPLEVEKIEQIDYGTFVSIDSHDFRRVLLELNAYS 154

[Close]
BLAST of Chy9G163540 vs. NCBI nr
Match: XP_023548338.1 (uncharacterized protein LOC111807006 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 51.6 bits (122), Expect = 1.07e-05
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 3   RQLDLLPYKVNQELRIDYKVFVSIDSKDFKRVVLEINAHS 42
           R+LDLLP +V    +IDY  FVSIDS DF+RV+LE+NA+S
Sbjct: 115 RELDLLPSEVENIEQIDYGTFVSIDSHDFRRVLLELNAYS 154

[Close]
BLAST of Chy9G163540 vs. NCBI nr
Match: XP_022958853.1 (uncharacterized protein LOC111460007 [Cucurbita moschata])

HSP 1 Score: 50.4 bits (119), Expect = 2.30e-05
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 3   RQLDLLPYKVNQELRIDYKVFVSIDSKDFKRVVLEINAHS 42
           R+LDLLP +V    +IDY  FVSIDS DF+RV+ E+NA+S
Sbjct: 82  RELDLLPLEVENIEQIDYGTFVSIDSHDFRRVLFELNAYS 121

The following BLAST results are available for this feature:
BLAST of Chy9G163540 vs.
Match NameE-valueIdentityDescription
BLAST of Chy9G163540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNE71.2e-1295.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G469020 PE=4 SV=1[more]
A0A1S4E5E31.7e-1178.72uncharacterized protein LOC103503425 OS=Cucumis melo OX=3656 GN=LOC103503425 PE=... [more]
A0A6J1L0Z07.7e-0462.50uncharacterized protein LOC111498891 OS=Cucurbita maxima OX=3661 GN=LOC111498891... [more]
BLAST of Chy9G163540 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51160.15.54e-1895.24hypothetical protein Csa_008095 [Cucumis sativus][more]
XP_016903444.15.33e-1578.72PREDICTED: uncharacterized protein LOC103503425 [Cucumis melo][more]
XP_023006014.15.57e-0662.50uncharacterized protein LOC111498891 [Cucurbita maxima][more]
XP_023548338.11.07e-0562.50uncharacterized protein LOC111807006 [Cucurbita pepo subsp. pepo][more]
XP_022958853.12.30e-0560.00uncharacterized protein LOC111460007 [Cucurbita moschata][more]
BLAST of Chy9G163540 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy9G163540.1Chy9G163540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane