Chy9G162830 (gene) Cucumber (hystrix) v1

Overview
NameChy9G162830
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH09: 6139222 .. 6139805 (+)
RNA-Seq ExpressionChy9G162830
SyntenyChy9G162830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAACCACTATTTTAAGCTGAATGAACTTTCACGATCATCCCTGACAAGTCACGGCAACAAACCATATGTATCATCAGCTTTATGGCAAATCCAGGGTTCCACCAGCAAAGACAGGCGTGCAGTGAATTGCTTCAGAGTTGCAAACTCGTACACGGTAGTGAACCCAGAGGATGGTTCTCAAAATTTATGTCCTGAATACCACTAAAGAAGTCTATCTTCTACAACTATCCTACTTCACAACCACCGGTATTCAAGCAAGTAGCTACCAATTTGGCTACAAGCTGGAACGCATTCTGAAGGGGATTTATCTTATCTTATGTGCAAAATCAATATACCCTAATTCTCATACGGGTGTGAAATACCAGAGGATGTTAAAACAGAGGAAATATCAGGGATAAAATGAAGGTGTTCAATTAAAAAAGAATGTTAAAACTTAAAAGGAAAGGCCTCACTATCGTCTTCCGGCCTCCGTGTTCGATTAACTGTAGATTCGGCCAGCAAAACACGCTCGGAAAACCCTCATCTATGAGAGAATCGGTTGAGATGCGGAAAGATAAAGAAGGTATACCTCAAGAATAA

mRNA sequence

ATGCCTAACCACTATTTTAAGCTGAATGAACTTTCACGATCATCCCTGACAAGTCACGGCAACAAACCATATGTATCATCAGCTTTATGGCAAATCCAGGGTTCCACCAGCAAAGACAGGCGTGCAGTGAATTGCTTCAGAGTTGCAAACTCGTACACGGTAGTGAACCCAGAGGATGGTTCTCAAAATTTATGTCCTGAATACCACTAAAGAAGTCTATCTTCTACAACTATCCTACTTCACAACCACCGGTATTCAAGCAAGTAGCTACCAATTTGGCTACAAGCTGGAACGCATTCTGAAGGGGATTTATCTTATCTTATGTGCAAAATCAATATACCCTAATTCTCATACGGGCCTCACTATCGTCTTCCGGCCTCCGTGTTCGATTAACTGTAGATTCGGCCAGCAAAACACGCTCGGAAAACCCTCATCTATGAGAGAATCGGTTGAGATGCGGAAAGATAAAGAAGGTATACCTCAAGAATAA

Coding sequence (CDS)

ATGCCTAACCACTATTTTAAGCTGAATGAACTTTCACGATCATCCCTGACAAGTCACGGCAACAAACCATATGTATCATCAGCTTTATGGCAAATCCAGGGTTCCACCAGCAAAGACAGGCGTGCAGTGAATTGCTTCAGAGTTGCAAACTCGTACACGGTAGTGAACCCAGAGGATGGTTCTCAAAATTTATGTCCTGAATACCACTAAAGAAGTCTATCTTCTACAACTATCCTACTTCACAACCACCGGTATTCAAGCAAGTAGCTACCAATTTGGCTACAAGCTGGAACGCATTCTGAAGGGGATTTATCTTATCTTATGTGCAAAATCAATATACCCTAATTCTCATACGGGCCTCACTATCGTCTTCCGGCCTCCGTGTTCGATTAACTGTAGATTCGGCCAGCAAAACACGCTCGGAAAACCCTCATCTATGAGAGAATCGGTTGAGATGCGGAAAGATAAAGAAGGTATACCTCAAGAATAA

Protein sequence

MPNHYFKLNELSRSSLTSHGNKPYVSSALWQIQGSTSKDRRAVNCFRVANSYTVVNPEDGSQNLCPEYH*RSLSSTTILLHNHRYSSK*LPIWLQAGTHSEGDLSYLMCKINIP*FSYGPHYRLPASVFD*L*IRPAKHARKTLIYERIG*DAER*RRYTSRIX
Homology
[Close]
BLAST of Chy9G162830 vs. ExPASy TrEMBL
Match: A0A0A0KRK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387440 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-16
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1  MPNHYFKLNELSRSSLTSHGNKPYVSSALWQIQGSTSKDRRAVNCFRVANSYT 54
          MPNHYFKLNELSRSSLTSHG K YVSS LW IQGSTSK RRAVN FRVANSYT
Sbjct: 1  MPNHYFKLNELSRSSLTSHGTKAYVSSDLWHIQGSTSKYRRAVNYFRVANSYT 53

[Close]
BLAST of Chy9G162830 vs. NCBI nr
Match: KGN50992.1 (hypothetical protein Csa_009144 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.87e-21
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1  MPNHYFKLNELSRSSLTSHGNKPYVSSALWQIQGSTSKDRRAVNCFRVANSYT 53
          MPNHYFKLNELSRSSLTSHG K YVSS LW IQGSTSK RRAVN FRVANSYT
Sbjct: 1  MPNHYFKLNELSRSSLTSHGTKAYVSSDLWHIQGSTSKYRRAVNYFRVANSYT 53

The following BLAST results are available for this feature:
BLAST of Chy9G162830 vs.
Match NameE-valueIdentityDescription
BLAST of Chy9G162830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRK52.8e-1688.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387440 PE=4 SV=1[more]
BLAST of Chy9G162830 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50992.11.87e-2188.68hypothetical protein Csa_009144 [Cucumis sativus][more]
BLAST of Chy9G162830 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy9G162830.1Chy9G162830.1mRNA