Chy9G162750 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G162750
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Retrotransposon protein
Location	chrH09: 6012558 .. 6013188 (+)
RNA-Seq Expression	Chy9G162750
Synteny	Chy9G162750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGACTGCAAATTAACCACCGTTGTCATCGAAAGTCGAATAAAATTATTGAAGAAGACATTCCAGACCATTATCAAGATGAGGGGACCAGCGGGCAGTGACTTCGAATGGAACGATGACATGAAGTGCATCATCGCTGATAAGGACATGTTCGACAATTGGGTCTGGGTAAGATGCAAAACTTAATTTTATAATTAACGGGGTATAATGAAATACTAATTGCAATGTTTTTTTTTTTTTTGCTCTGTTTTCTTTTCAGACTTATCCTGCAACAAAAGGACTCCTAAACAAGCCCTTCCCACATTACGGCGTGTTGTCATACGTCTTTGGGAAAGACCACACAAAAGGGGCTCGTGCAGAGATAATCGCAAACATTGGGTCCAACGTGCCAGGACCCAGTGCTGGTGTCCCCATAGAGGATGGCCTAAAGACAGAGTTTCCAACTATTGCAGGCCGAGGATGAACCTCTCACTGGATGACATGATGGTCGGACGATCTGGTAGGTCCAACGATTGTCGGTCGGGTTCTAGCGATCAGAAAAGAAAGCGCGACATTCAGGCATTCGAGGCTTATGACCTCATTCAGGTCGCCATGGACATTGCGAATGAACAGCTTAAGTCCATTGTGG

mRNA sequence

ATGTCCGACTGCAAATTAACCACCGTTGTCATCGAAAGTCGAATAAAATTATTGAAGAAGACATTCCAGACCATTATCAAGATGAGGGGACCAGCGGGCAGTGACTTCGAATGGAACGATGACATGAAGTGCATCATCGCTGATAAGGACATGTTCGACAATTGGGTCTGGACTTATCCTGCAACAAAAGGACTCCTAAACAAGCCCTTCCCACATTACGGCGTGTTGTCATACGTCTTTGGGAAAGACCACACAAAAGGGGCTCGTGCAGAGATAATCGCAAACATTGGGTCCAACGTGCCAGGACCCAGTGCTGGTGTCCCCATAGAGGATGGCCTAAAGACAGAGTTTCCAACTATTGCAGGCCGAGGATGAACCTCTCACTGGATGACATGATGGTCGGACGATCTGGTAGGTCCAACGATTGTCGGTCGGGTTCTAGCGATCAGAAAAGAAAGCGCGACATTCAGGCATTCGAGGCTTATGACCTCATTCAGGTCGCCATGGACATTGCGAATGAACAGCTTAAGTCCATTGTGG

Coding sequence (CDS)

ATGTCCGACTGCAAATTAACCACCGTTGTCATCGAAAGTCGAATAAAATTATTGAAGAAGACATTCCAGACCATTATCAAGATGAGGGGACCAGCGGGCAGTGACTTCGAATGGAACGATGACATGAAGTGCATCATCGCTGATAAGGACATGTTCGACAATTGGGTCTGGACTTATCCTGCAACAAAAGGACTCCTAAACAAGCCCTTCCCACATTACGGCGTGTTGTCATACGTCTTTGGGAAAGACCACACAAAAGGGGCTCGTGCAGAGATAATCGCAAACATTGGGTCCAACGTGCCAGGACCCAGTGCTGGTGTCCCCATAGAGGATGGCCTAAAGACAGAGTTTCCAACTATTGCAGGCCGAGGATGAACCTCTCACTGGATGACATGATGGTCGGACGATCTGGTAGGTCCAACGATTGTCGGTCGGGTTCTAGCGATCAGAAAAGAAAGCGCGACATTCAGGCATTCGAGGCTTATGACCTCATTCAGGTCGCCATGGACATTGCGAATGAACAGCTTAAGTCCATTGTGG

Protein sequence

MSDCKLTTVVIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMFDNWVWTYPATKGLLNKPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAGVPIEDGLKTEFPTIAGRG*TSHWMT*WSDDLVGPTIVGRVLAIRKESATFRHSRLMTSFRSPWTLRMNSLSPLW

Homology

[Close]

BLAST of Chy9G162750 vs. ExPASy TrEMBL
Match: A0A0A0KQ83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.9e-56
Identity = 123/186 (66.13%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 1   MSDCKLTTVVIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMFDNWVWTYP 60
           M  CKLTT +IES+IKLLKKTFQTI+KMR PAGS FEWN DMKCIIA++DMFDNWV TYP
Sbjct: 1   MFGCKLTTTLIESQIKLLKKTFQTIVKMREPAGSGFEWNGDMKCIIAERDMFDNWVRTYP 60

Query: 61  ATKGLLNKPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAGVPIEDGLKTEFPTI 120
           ATKGLLNK FPHYG+LSYVFGKDHTKG         G     PSA VP EDGLK EFPT+
Sbjct: 61  ATKGLLNKVFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLKIEFPTM 120

Query: 121 AGRG*TSHWMT*WSDD-LVGPTIVGRV------LAIRKESATFRHSRLMTSFRSPWTLRM 180
                 S  M    DD +VG +  GR       L I+KESA FRH RLMTSFRSPWTLRM
Sbjct: 121 C-----SPRMNLSLDDMMVGQS--GRFSDCRSGLTIKKESAIFRHLRLMTSFRSPWTLRM 179

[Close]

BLAST of Chy9G162750 vs. ExPASy TrEMBL
Match: A0A5D3E267 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001310 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 9.1e-32
Identity = 71/121 (58.68%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 1   MSDCKLTTV-VIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMFDNWVWTY 60
           M  C LT++ VIES+ KLLK+T   I++++GP  S F W+ ++KCIIA KD+FD+W  T+
Sbjct: 132 MPGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGWHYELKCIIAAKDVFDSWARTH 191

Query: 61  PATKGLLNKPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAGVPIEDGLKTEFPT 120
            A KGLLNKPFPHY  LSYVF KD T GA  E+  +IGSNVPG S GV  EDGL  EFPT
Sbjct: 192 LACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPT 251

[Close]

BLAST of Chy9G162750 vs. ExPASy TrEMBL
Match: A0A5A7SXR1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold86G00100 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.9e-29
Identity = 70/125 (56.00%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 1   MSDCKLTTVVIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADK--DMFDNWVWT 60
           M  C LTT VIESRIKLLKKTFQ I +MRGP GS F WND++KCII ++     +  V +
Sbjct: 38  MVSCSLTTTVIESRIKLLKKTFQAIEEMRGPTGSGFGWNDNVKCIITERVHHHREGRVRS 97

Query: 61  YPATKGLLNKPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAGVPIEDGLKTEFP 120
               KGLLNKPFPH   LSYVF KD   G R E  A+IGSNV   +  VP+EDG+  EFP
Sbjct: 98  LGPVKGLLNKPFPHCEALSYVFEKDRATGVRVETFADIGSNVSADNDNVPVEDGINMEFP 157

Query: 121 TIAGR 124
           T+  +
Sbjct: 158 TMCSQ 162

[Close]

BLAST of Chy9G162750 vs. ExPASy TrEMBL
Match: A0A5D3CQ47 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00190 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-29
Identity = 66/118 (55.93%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 8   TVVIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMFDNWVWTYPATKGLLN 67
           T VI+ RIK+LK+TFQ I +MRGPA S F WND+ KCII +K++FDNW+ ++PATKGLLN
Sbjct: 64  TTVIDCRIKILKRTFQAIAEMRGPACSGFRWNDEKKCIITEKELFDNWIRSHPATKGLLN 123

Query: 68  KPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAG-VPIEDGLKTEFPTIAGRG 125
           KPFPHY  L+YVF +D   G  AE  AN+GSN PG       + DG   EFP +  +G
Sbjct: 124 KPFPHYDELTYVFCRDRATGRFAETFANVGSNEPGGGYDRFDMVDG-NEEFPPVYSQG 180

[Close]

BLAST of Chy9G162750 vs. ExPASy TrEMBL
Match: A0A5A7U1A8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00220 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-29
Identity = 66/118 (55.93%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 8   TVVIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMFDNWVWTYPATKGLLN 67
           T VI+ RIK+LK+TFQ I +MRGPA S F WND+ KCII +K++FDNW+ ++PATKGLLN
Sbjct: 64  TTVIDCRIKILKRTFQAIAEMRGPACSGFRWNDEKKCIITEKELFDNWIRSHPATKGLLN 123

Query: 68  KPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAG-VPIEDGLKTEFPTIAGRG 125
           KPFPHY  L+YVF +D   G  AE  AN+GSN PG       + DG   EFP +  +G
Sbjct: 124 KPFPHYDELTYVFCRDRATGRFAETFANVGSNEPGGGYDRFDMVDG-NEEFPPVYSQG 180

[Close]

BLAST of Chy9G162750 vs. NCBI nr
Match: KGN50999.1 (hypothetical protein Csa_008162 [Cucumis sativus])

HSP 1 Score: 225 bits (573), Expect = 5.85e-72
Identity = 123/186 (66.13%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 1   MSDCKLTTVVIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMFDNWVWTYP 60
           M  CKLTT +IES+IKLLKKTFQTI+KMR PAGS FEWN DMKCIIA++DMFDNWV TYP
Sbjct: 1   MFGCKLTTTLIESQIKLLKKTFQTIVKMREPAGSGFEWNGDMKCIIAERDMFDNWVRTYP 60

Query: 61  ATKGLLNKPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAGVPIEDGLKTEFPTI 120
           ATKGLLNK FPHYG+LSYVFGKDHTKG         G     PSA VP EDGLK EFPT+
Sbjct: 61  ATKGLLNKVFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLKIEFPTM 120

Query: 121 AGRG*TSHWMT*WSDDL-VGPTIVGRV------LAIRKESATFRHSRLMTSFRSPWTLRM 179
                 S  M    DD+ VG +  GR       L I+KESA FRH RLMTSFRSPWTLRM
Sbjct: 121 C-----SPRMNLSLDDMMVGQS--GRFSDCRSGLTIKKESAIFRHLRLMTSFRSPWTLRM 179

[Close]

BLAST of Chy9G162750 vs. NCBI nr
Match: TYK29878.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 7.28e-39
Identity = 71/121 (58.68%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 1   MSDCKLTTV-VIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMFDNWVWTY 60
           M  C LT++ VIES+ KLLK+T   I++++GP  S F W+ ++KCIIA KD+FD+W  T+
Sbjct: 132 MPGCTLTSITVIESKTKLLKRTIMAIVEIQGPTCSGFGWHYELKCIIAAKDVFDSWARTH 191

Query: 61  PATKGLLNKPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAGVPIEDGLKTEFPT 120
            A KGLLNKPFPHY  LSYVF KD T GA  E+  +IGSNVPG S GV  EDGL  EFPT
Sbjct: 192 LACKGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPT 251

[Close]

BLAST of Chy9G162750 vs. NCBI nr
Match: KAA0036124.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27595.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 1.70e-37
Identity = 70/125 (56.00%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 1   MSDCKLTTVVIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMF--DNWVWT 60
           M  C LTT VIESRIKLLKKTFQ I +MRGP GS F WND++KCII ++     +  V +
Sbjct: 38  MVSCSLTTTVIESRIKLLKKTFQAIEEMRGPTGSGFGWNDNVKCIITERVHHHREGRVRS 97

Query: 61  YPATKGLLNKPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAGVPIEDGLKTEFP 120
               KGLLNKPFPH   LSYVF KD   G R E  A+IGSNV   +  VP+EDG+  EFP
Sbjct: 98  LGPVKGLLNKPFPHCEALSYVFEKDRATGVRVETFADIGSNVSADNDNVPVEDGINMEFP 157

Query: 121 TIAGR 123
           T+  +
Sbjct: 158 TMCSQ 162

[Close]

BLAST of Chy9G162750 vs. NCBI nr
Match: KAA0047371.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (342), Expect = 4.65e-36
Identity = 66/118 (55.93%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 8   TVVIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMFDNWVWTYPATKGLLN 67
           T VI+ RIK+LK+TFQ I +MRGPA S F WND+ KCII +K++FDNW+ ++PATKGLLN
Sbjct: 64  TTVIDCRIKILKRTFQAIAEMRGPACSGFRWNDEKKCIITEKELFDNWIRSHPATKGLLN 123

Query: 68  KPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAG-VPIEDGLKTEFPTIAGRG 124
           KPFPHY  L+YVF +D   G  AE  AN+GSN PG       + DG + EFP +  +G
Sbjct: 124 KPFPHYDELTYVFCRDRATGRFAETFANVGSNEPGGGYDRFDMVDGNE-EFPPVYSQG 180

[Close]

BLAST of Chy9G162750 vs. NCBI nr
Match: TYK14047.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (342), Expect = 4.65e-36
Identity = 66/118 (55.93%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 8   TVVIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMFDNWVWTYPATKGLLN 67
           T VI+ RIK+LK+TFQ I +MRGPA S F WND+ KCII +K++FDNW+ ++PATKGLLN
Sbjct: 64  TTVIDCRIKILKRTFQAIAEMRGPACSGFRWNDEKKCIITEKELFDNWIRSHPATKGLLN 123

Query: 68  KPFPHYGVLSYVFGKDHTKGARAEIIANIGSNVPGPSAG-VPIEDGLKTEFPTIAGRG 124
           KPFPHY  L+YVF +D   G  AE  AN+GSN PG       + DG + EFP +  +G
Sbjct: 124 KPFPHYDELTYVFCRDRATGRFAETFANVGSNEPGGGYDRFDMVDGNE-EFPPVYSQG 180

[Close]

BLAST of Chy9G162750 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 2.7e-04
Identity = 21/78 (26.92%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 10  VIESRIKLLKKTFQTIIKMRGPAGSDFEWNDDMKCIIADKDMFDNWVWTYPATKGLLNKP 69
           V+++R K L++ +  I  +    G  F W+     +IAD D+++ ++  +P  +    K 
Sbjct: 377 VLKNRYKHLRRLYNDIKFLLEQNG--FSWDARRDMVIADDDIWNTYIQAHPEARSYRVKT 436

Query: 70  FPHYGVLSYVFGKDHTKG 88
            P Y  L ++FGK+ + G
Sbjct: 437 IPSYPNLCFIFGKETSDG 452

The following BLAST results are available for this feature:

BLAST of Chy9G162750 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G162750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ83	6.9e-56	66.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387990 PE=4 SV=1	[more]
A0A5D3E267	9.1e-32	58.68	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SXR1	1.9e-29	56.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CQ47	3.2e-29	55.93	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U1A8	3.2e-29	55.93	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Chy9G162750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50999.1	5.85e-72	66.13	hypothetical protein Csa_008162 [Cucumis sativus]	[more]
TYK29878.1	7.28e-39	58.68	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036124.1	1.70e-37	56.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK27595.1 retrotransposon p...	[more]
KAA0047371.1	4.65e-36	55.93	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14047.1	4.65e-36	55.93	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Chy9G162750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	2.7e-04	26.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 11..96
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 11..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G162750.1	Chy9G162750.1	mRNA