Chy9G162540 (gene) Cucumber (hystrix) v1

Overview
NameChy9G162540
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDFRP_C domain-containing protein
LocationchrH09: 5731709 .. 5734378 (-)
RNA-Seq ExpressionChy9G162540
SyntenyChy9G162540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCAGAAGAAGCAGCTATGGAACAAGAGAAGAAGCTCTCATCTCATAATCCAAGGACGGTTCCCATCACAGAGGCTCAATTCCTATCCTGGAAGCGCCAGAAGGTATTTTCCCTTCTTCTTCTTCTTGTTCTTCATCAATCTCTCTCAGGCTCTAAATTTATTGTTTTTTTTAATTGCTGCTCTTTAATGTGTCATTGCTCTGCTTGAGTTCTTTAAGGTGCCAATCAATCGTATTTCCATGCCATACCCTGAAAAATTAGTGAATTTAGGGTTGCGTTGAATCACTTTTGGGAATTTGGAAACCTCTAGGATTCATTCAATTTTGAGAGGTAATTAGGAATAAATTCCTCTGTTCTTTGCAGAATAATGGGTCTAAATTTTGTCTAAACTCAATTCGGCTTAAGTTTTGGAAAGGGATTTAAGAGAAAAACAAATTTAGAATAAACAACCAAACAGGCAACAAACTCGAAGAAACTACGATATCACATTACTAGACACAAACAAGATACACCTCCAAATTTTATGTACTAAAGGGTGCGCTAGTGTATTTTTGGTTGTGGCAAATATCTGAGTAAGAGACAATTCTTAATTCACCATCATTACAAACTTATGCCTTATCAATAAAAAAGAGACTTCTGAAATGTCGACCAAATCATCATTTTGGAGTTAAACAATCTCAAAACAGTGAGATTCAACTAGGATATATTAGGTGAGGAAAAGGAATTCGGCGATGAGAAACTATCGTGTGGGTTTGTTTGACCTAGTAGAAAAAATGGAAACAGTCTCAATAACTCTCAATAACTAACTAAATGGACATGAGTCCAATTCATAGTAGCCACCTACCTAAATTAATTTCTTATGAGTTTTCTTGACACCCAAATGTTGTAGGGTAAGGTAAATTGTTGGTGAGATTACTCGAAGTGCATGTAAGCTGACTCGGACACTTACAGATATCAGAAAAAGAAAAGAAATGTTTGAATGTATAAAATACAGAGATAATCCTAGCCTTCTGTGAGGGACTAGGATTATTTTGTTTTGTTTTCATTTTTTTTTTATTAAGAAACCAGCTTTAGGGCCCATAAAAAAAGAACAACTATTAACGGAGCAAAGTAGAAGAGAAGAAAAAAATTATAATAGAACAAGATTACTAGAGATTGCGTCTACACTCAACTATTAAGAATAAAAAAATGAGGATAGTTACATTGAAATTTGCTGCATTCTAAATCTCTTCCCAAAATTCTTGTTGACTGCTGAAAGATTCCCTTGATTCTCTCAAGCCATAAATTTCACAATTTAATGAAGAATCTAGCATCCCACGGCCAGATAATAAATCTTTTTCTTACCGAAGGAGGAATTCACCAATACCTCCTCAATACCCCTATAATTTCTGGGAGGAACAGTGACTCCAAACTTATTCAAGAAATTTCTCCATAGTGTCAAATATCAACCAATGCAAAGCGGCAACTTCAAATCAGATGAATAATTTCCTCTGTAGATCTTTTTCATACATCATATCCCACACGCCACTCTCAATGGGACATAAAACCATGGATGGAGATCTTTGAATGAAGTTACAATGTTTAACCTTCCCAAAGAAACCGATAAAGCGAAGAACCTAACCTTTGGATTTTTCCAAATTATGGTGAAGAAAGAGGAGACAGAAGGATTGGATTCAGACACCTAATGGGCAACAAGAGAATTAGTAGAGAACACTCTGTTAGATACCTAGATTTAGATAGGGCTAAGGGTAGTTAGTTATATAGACAGTTAGATGGTTATAGGAAGTTGGGGAGGGAAGAAAGGCATGAAGAATTTGGTGAAGATAATGGGCTGCAACATTCTTTGAAAGAAAGGAAGGGCAGAGGGTTAGGGTTCTTTTACTTGTTTGTTCTTTTATATTGTAATTTCTGTTTGAGATATCAATAAAATGTAAACACTATATCAGTGTTCTACTATCACACTCCTGAAGGATCAAGAGTCCATTGGAAGTTTGACATAGGCACATCCCTTGTAGCAGAAAGGAGATTGGCCTAATATGAGATTCATGATCATTAGTAGTCTTCCAAAATGAAAAGTCATGATCATTATGGATGGTCGATGTAGAAGAACTATAATTGAGAGGATTAAGACAGAATTGACAAGCACCTCATTTCCAAGTCAAAATAAAGAGTTAGGTAAGAACTTGGGAAGAACTATTACCGTTCCTAAGTCCACCGAGAATCAGACATGCGTTCCATTTTCCATGGAAATTTTAACGAAATTGTTAAAGAAGATCAGTGAAATTCTATAGAAAATACCTTCTGTATGTAAGTGGCTATCTTTGAATTTGGTGGCTATTAACGTTCTAAATCACATGTTTCAACAATTGATAGACCACATGAACTGCAGCTTCATTTTTGTTAAAGTTAATTAACCACTAAAACAAACCTAAGCCATTCCACCAGTCTTTTAAGAGTGATTTGTGTCAGTAAAGTTAATGAGTAGTTGATGTTTGACATCCTATTCCTAACCATTTTTTCTTATTTGCAGGATGCTGAGGCATCCGCTAAAAGCGATGAAACAGCAAGGAAACGTGCGGAAGATATTGCCTTAGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGTTGTTTGATAATTCTCAATATTGA

mRNA sequence

ATGGGAGCAGAAGAAGCAGCTATGGAACAAGAGAAGAAGCTCTCATCTCATAATCCAAGGACGGTTCCCATCACAGAGGCTCAATTCCTATCCTGGAAGCGCCAGAAGGATGCTGAGGCATCCGCTAAAAGCGATGAAACAGCAAGGAAACGTGCGGAAGATATTGCCTTAGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGTTGTTTGATAATTCTCAATATTGA

Coding sequence (CDS)

ATGGGAGCAGAAGAAGCAGCTATGGAACAAGAGAAGAAGCTCTCATCTCATAATCCAAGGACGGTTCCCATCACAGAGGCTCAATTCCTATCCTGGAAGCGCCAGAAGGATGCTGAGGCATCCGCTAAAAGCGATGAAACAGCAAGGAAACGTGCGGAAGATATTGCCTTAGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGTTGTTTGATAATTCTCAATATTGA

Protein sequence

MGAEEAAMEQEKKLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAVQMNGRELFLHQPWLFDNSQY*
Homology
BLAST of Chy9G162540 vs. ExPASy Swiss-Prot
Match: Q54DA5 (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.7e-04
Identity = 25/72 (34.72%), Postives = 37/72 (51.39%), Query Frame = 0

Query: 4   EEAAMEQEKKLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAVQMN 63
           EE   E+  KL+    ++ P+T   FL WK +K  +    + +   KR  DI  G   M+
Sbjct: 227 EELIEEERAKLT----KSTPVTLETFLRWKEEKRLQKEKAAKDAQDKRLADIKAGKTSMS 286

Query: 64  GRELFLHQPWLF 76
           GRE+F+  P LF
Sbjct: 287 GREMFVFNPDLF 294

BLAST of Chy9G162540 vs. ExPASy TrEMBL
Match: A0A0A0KN87 (DFRP_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G407070 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.4e-34
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0

Query: 1  MGAEEAAMEQEKKLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAV 60
          MGAEEAAMEQEK LSSHNPRTVPITEAQFLSWKR+KDAEASAK +ETARKRAEDIALGAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWLFDNSQY 81
          QMNGRELFLHQPW+FDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 80

BLAST of Chy9G162540 vs. ExPASy TrEMBL
Match: A0A1S3CCP9 (zinc finger CCCH domain-containing protein 15 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499290 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0

Query: 1  MGAEEAAMEQEKKLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAV 60
          MG EEAAMEQE KLS +NPRTVPITEAQFLSWKRQKDAEASAK DETARKRAEDIALGAV
Sbjct: 1  MGDEEAAMEQE-KLSCNNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWLFDNSQY 81
          QMNGRELFLHQPW+FDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 79

BLAST of Chy9G162540 vs. ExPASy TrEMBL
Match: A0A6J1FLL2 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445336 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-30
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 1  MGAEEAAMEQEKKLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAV 60
          MGAEEAAMEQE KL+S NPRT+PITE QFLSWKRQKDAEASAK DETARKRA+DIA GAV
Sbjct: 1  MGAEEAAMEQE-KLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAV 60

Query: 61 QMNGRELFLHQPWLFDNSQY 81
          QMNGRELFLHQPW+FDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 79

BLAST of Chy9G162540 vs. ExPASy TrEMBL
Match: A0A6J1CIH3 (zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=3673 GN=LOC111011797 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.5e-30
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0

Query: 1  MGAEEAAMEQEK-KLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGA 60
          MGAEEAA   EK KL+SHNPRT PITEAQFLSWKRQKDAEASAK DETARKRAEDIA GA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWLFDNSQY 81
          VQMNGRELFLHQPW+FDN+QY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

BLAST of Chy9G162540 vs. ExPASy TrEMBL
Match: A0A6J1JUQ1 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=3661 GN=LOC111489071 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.9e-29
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0

Query: 1  MGAEEAAMEQEKKLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAV 60
          M AEEAAMEQE KL+S NPRT+PITE QFLSWKRQKDAEASAK DETARKRA+DIA GAV
Sbjct: 1  MVAEEAAMEQE-KLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAV 60

Query: 61 QMNGRELFLHQPWLFDNSQY 81
          QMNGRELFLHQPW+FDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 79

BLAST of Chy9G162540 vs. NCBI nr
Match: XP_011655210.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus] >XP_011655211.1 zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus] >XP_011655212.1 zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus] >KGN51013.1 hypothetical protein Csa_009113 [Cucumis sativus])

HSP 1 Score: 152 bits (383), Expect = 4.20e-46
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0

Query: 1  MGAEEAAMEQEKKLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAV 60
          MGAEEAAMEQEK LSSHNPRTVPITEAQFLSWKR+KDAEASAK +ETARKRAEDIALGAV
Sbjct: 1  MGAEEAAMEQEKNLSSHNPRTVPITEAQFLSWKRRKDAEASAKREETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWLFDNSQY 80
          QMNGRELFLHQPW+FDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 80

BLAST of Chy9G162540 vs. NCBI nr
Match: XP_008460490.1 (PREDICTED: zinc finger CCCH domain-containing protein 15 homolog isoform X2 [Cucumis melo] >XP_016902565.1 PREDICTED: zinc finger CCCH domain-containing protein 15 homolog isoform X2 [Cucumis melo] >XP_016902566.1 PREDICTED: zinc finger CCCH domain-containing protein 15 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 143 bits (361), Expect = 9.28e-43
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0

Query: 1  MGAEEAAMEQEKKLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAV 60
          MG EEAAMEQEK LS +NPRTVPITEAQFLSWKRQKDAEASAK DETARKRAEDIALGAV
Sbjct: 1  MGDEEAAMEQEK-LSCNNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIALGAV 60

Query: 61 QMNGRELFLHQPWLFDNSQY 80
          QMNGRELFLHQPW+FDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 79

BLAST of Chy9G162540 vs. NCBI nr
Match: XP_022939418.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_023549915.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo] >KAG6579014.1 hypothetical protein SDJN03_23462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140 bits (354), Expect = 1.09e-41
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 1  MGAEEAAMEQEKKLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAV 60
          MGAEEAAMEQEK L+S NPRT+PITE QFLSWKRQKDAEASAK DETARKRA+DIA GAV
Sbjct: 1  MGAEEAAMEQEK-LASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAV 60

Query: 61 QMNGRELFLHQPWLFDNSQY 80
          QMNGRELFLHQPW+FDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 79

BLAST of Chy9G162540 vs. NCBI nr
Match: XP_022141384.1 (zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia])

HSP 1 Score: 139 bits (349), Expect = 6.67e-41
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0

Query: 1  MGAEEAAMEQEK-KLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGA 60
          MGAEEAA   EK KL+SHNPRT PITEAQFLSWKRQKDAEASAK DETARKRAEDIA GA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWLFDNSQY 80
          VQMNGRELFLHQPW+FDN+QY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

BLAST of Chy9G162540 vs. NCBI nr
Match: XP_022992866.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima])

HSP 1 Score: 137 bits (345), Expect = 2.57e-40
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0

Query: 1  MGAEEAAMEQEKKLSSHNPRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAV 60
          M AEEAAMEQEK L+S NPRT+PITE QFLSWKRQKDAEASAK DETARKRA+DIA GAV
Sbjct: 1  MVAEEAAMEQEK-LASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAV 60

Query: 61 QMNGRELFLHQPWLFDNSQY 80
          QMNGRELFLHQPW+FDNSQY
Sbjct: 61 QMNGRELFLHQPWVFDNSQY 79

BLAST of Chy9G162540 vs. TAIR 10
Match: AT1G22140.1 (unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 4.8e-17
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 19 PRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALGAVQMNGRELFLHQPWLFDNS 78
          P  + I++ QFL+WKRQKDAE  AK  E ARKR EDIA G V MNGRELFLH+PW+FD++
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGRELFLHEPWVFDDT 70

Query: 79 QY 81
           +
Sbjct: 71 HH 72

BLAST of Chy9G162540 vs. TAIR 10
Match: AT1G22140.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-06
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 0

Query: 19 PRTVPITEAQFLSWKRQKDAEASAKSDETARKRAEDIALG 59
          P  + I++ QFL+WKRQKDAE  AK  E ARKR EDIA G
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASG 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q54DA57.7e-0434.72Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideu... [more]
Match NameE-valueIdentityDescription
A0A0A0KN877.4e-3493.75DFRP_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G407070 PE=4... [more]
A0A1S3CCP92.6e-3192.50zinc finger CCCH domain-containing protein 15 homolog isoform X2 OS=Cucumis melo... [more]
A0A6J1FLL21.7e-3088.75zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3... [more]
A0A6J1CIH36.5e-3087.65zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=... [more]
A0A6J1JUQ11.9e-2987.50zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=366... [more]
Match NameE-valueIdentityDescription
XP_011655210.14.20e-4693.75zinc finger CCCH domain-containing protein 15 homolog [Cucumis sativus] >XP_0116... [more]
XP_008460490.19.28e-4392.50PREDICTED: zinc finger CCCH domain-containing protein 15 homolog isoform X2 [Cuc... [more]
XP_022939418.11.09e-4188.75zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_0... [more]
XP_022141384.16.67e-4187.65zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia][more]
XP_022992866.12.57e-4087.50zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT1G22140.14.8e-1762.90unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bac... [more]
AT1G22140.21.7e-0662.50unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032378ZC3H15/TMA46 family, C-terminalPFAMPF16543DFRP_Ccoord: 9..77
e-value: 2.2E-8
score: 34.5
NoneNo IPR availableGENE3D6.20.400.10coord: 3..72
e-value: 7.4E-6
score: 28.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..49
NoneNo IPR availablePANTHERPTHR12681ZINC FINGER-CONTAINING PROTEIN P48ZNFcoord: 1..80
NoneNo IPR availablePANTHERPTHR12681:SF10OS03G0385301 PROTEINcoord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy9G162540.1Chy9G162540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
cellular_component GO:0005829 cytosol