Chy9G162450 (gene) Cucumber (hystrix) v1

Overview
NameChy9G162450
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description60S ribosomal protein L30-like
LocationchrH09: 5594789 .. 5596488 (-)
RNA-Seq ExpressionChy9G162450
SyntenyChy9G162450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCGGCGAAGAAGACCGTAAGTATCACTCTAATGTCGCACTTCCAATTAGTTTATGGATACTGGTTTTGATGATTTTGATGATTTTGATGATTTTGATGATTTTTGGTGTTGTAATTTGCAGAAGAAGACTCACGAGAGCATTAACAACAGGCTGGCCCTTGTGATGAAGAGCGGCAAGTACACACTCGGTTACAAAACCGTTCTTCGCACTATCAGAAGTTCCAAAGGTTTTCATCCGTGTTCTTTCAATTTAAGGTTTTATTCTGTATTTTTTTTTTTTACACATTTTAGTATTTCGATCTGTGAAAATACAGGGAAGCTTATTATTCTATCGAACAACTGCCCACCTCTGCGCAAATCCGAGATTGAGTACTACGCAATGCTTGCCAAAATAGGAGTTCACCACTACAACGGAAGTAAGTTTTTTTAAATAGTCTATTTTGTCCAAGTTGCAAGCTTTATAACATCTTGGAGCCTCGTATGCATGATTTCTGATTTATGGGACTTGACTGCTCTTTTTCCTTTATAATGTTAGCACATCTTTCATCATTGTAGAATAAGAAAAACAGCTCTTATACTTGACGCAAATTAGAGTTAGCATTTTAGATAATCTGGGCAAATATTTACTTCGTTTGTAATTGTATATTTGAGTAACTTGATAAATTTGGTAATGGCTGGGTATTCTGCTACAAATAGTGCTCATAATGGGGCTTTCTGTGTTCAAATAAACTAATAATTCGGTGTGTAGTTTGTTCAATTGTTCACACTATAATCTTTGTAGAACTATTTGCCAGGTAGGTGCTACTTGCATACCTGTGAAGGAAGGCACAGATAGACACAGGAAAAATATTTTTATCGAGTGTCAGAGTGTCCAGATGTTGTAGGAGGTTATGGCTAAAAAAATGTCTATGCTTAGTTTTGTAATTTCCTATTGATTTGCTATCATTATCTTTCAACAGTTGTTTTGATCTTGGTATGCAGCCTATTGAATTAAATAGGTGGGTTTCTATCATTGGTAGTAATTGGTTTTCTTCTTACTCATAATATTTATGTTGGTCAATCAATTTAATTTTAACTCATTCCATTTATACATGTTTAGTTTAAATCTTAGTCAGTTAATTAGACTTGTATTGTTGATTTTTCTGCTTTACTTCTATGTATTTTCAGGCACTGTTGTTATTTGTATGTTTTATTTATTATTTTTGTTATTTATGTACGTTTAGGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTCTCCTGCCTTAGCATTATCGATCCAGGTACTACAAACTTTTTTATTCGGTTCATTAAATTTCATTTCTATTTCATTACAGTGGTCCTTATATTTCAGTTCTTGAAGTTTGCATAAACAATTGAAACAAAAATTAATATATGGCCATTTGATTTTCCTTTACTTTGTGAATTAATTTCGTACTGAGAGCATATATTTTCTGTGGTATTTTAGAGAACACGTGTAGTTGAGTGTTGGGTTTTTAAATGCAACACCTTGAAAATTGGCACCAAAATGATAAATCTGTTTAAGTTTAAATCAAAAATAGAAAATAGTGAAACATTTAGGCGTCTTATACTTGACTTTTATTGATTGGTTTACCAAGATTCCTCCCTTTCTTTCTTTTTCAGGTGATTCTGATATTATCAAATCGCTTCCCGGTGATCAGTGA

mRNA sequence

ATGGCGCCGGCGAAGAAGACCAAGAAGACTCACGAGAGCATTAACAACAGGCTGGCCCTTGTGATGAAGAGCGGCAAGTACACACTCGGTTACAAAACCGTTCTTCGCACTATCAGAAGTTCCAAAGGGAAGCTTATTATTCTATCGAACAACTGCCCACCTCTGCGCAAATCCGAGATTGAGTACTACGCAATGCTTGCCAAAATAGGAGTTCACCACTACAACGGAAGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTCTCCTGCCTTAGCATTATCGATCCAGGTGATTCTGATATTATCAAATCGCTTCCCGGTGATCAGTGA

Coding sequence (CDS)

ATGGCGCCGGCGAAGAAGACCAAGAAGACTCACGAGAGCATTAACAACAGGCTGGCCCTTGTGATGAAGAGCGGCAAGTACACACTCGGTTACAAAACCGTTCTTCGCACTATCAGAAGTTCCAAAGGGAAGCTTATTATTCTATCGAACAACTGCCCACCTCTGCGCAAATCCGAGATTGAGTACTACGCAATGCTTGCCAAAATAGGAGTTCACCACTACAACGGAAGTAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTACCGTGTCTCCTGCCTTAGCATTATCGATCCAGGTGATTCTGATATTATCAAATCGCTTCCCGGTGATCAGTGA

Protein sequence

MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEIEYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ*
Homology
BLAST of Chy9G162450 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 7.8e-55
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+++RSSKGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKYYRV CLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGDQ 112

BLAST of Chy9G162450 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-51
Identity = 94/112 (83.93%), Postives = 108/112 (96.43%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

BLAST of Chy9G162450 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.4e-51
Identity = 95/111 (85.59%), Postives = 106/111 (95.50%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL ++RS+KGKLII++NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGD 112
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RV CLSIID GDSDIIKS+PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGD 111

BLAST of Chy9G162450 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.0e-51
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

BLAST of Chy9G162450 vs. ExPASy Swiss-Prot
Match: Q9LSA3 (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.5e-50
Identity = 91/112 (81.25%), Postives = 106/112 (94.64%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

BLAST of Chy9G162450 vs. ExPASy TrEMBL
Match: A0A5D3DSZ7 (60S ribosomal protein L30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002180 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.7e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

BLAST of Chy9G162450 vs. ExPASy TrEMBL
Match: A0A6J1JWW8 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111489070 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.7e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

BLAST of Chy9G162450 vs. ExPASy TrEMBL
Match: A0A6J1FH91 (60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111445673 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.7e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

BLAST of Chy9G162450 vs. ExPASy TrEMBL
Match: A0A1S3CCQ4 (60S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.7e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

BLAST of Chy9G162450 vs. ExPASy TrEMBL
Match: A0A0A0KQ98 (Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G409620 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

BLAST of Chy9G162450 vs. NCBI nr
Match: XP_008460497.1 (PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S ribosomal protein L30-like [Cucurbita moschata] >XP_022992865.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023549693.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_023549694.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >XP_038906736.1 60S ribosomal protein L30-like [Benincasa hispida] >KAA0062391.1 60S ribosomal protein L30-like [Cucumis melo var. makuwa] >KAG6579016.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016539.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma] >TYK26589.1 60S ribosomal protein L30-like [Cucumis melo var. makuwa])

HSP 1 Score: 228 bits (581), Expect = 2.63e-75
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

BLAST of Chy9G162450 vs. NCBI nr
Match: XP_004140311.1 (60S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa_008795 [Cucumis sativus])

HSP 1 Score: 226 bits (577), Expect = 1.07e-74
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIR SKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRGSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112
           EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112

BLAST of Chy9G162450 vs. NCBI nr
Match: XP_022141723.1 (60S ribosomal protein L30-like [Momordica charantia])

HSP 1 Score: 223 bits (568), Expect = 2.54e-73
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MA AKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGDQ 112

BLAST of Chy9G162450 vs. NCBI nr
Match: XP_022952815.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >KAG7032743.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222 bits (566), Expect = 5.12e-73
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 112

BLAST of Chy9G162450 vs. NCBI nr
Match: XP_022990953.1 (60S ribosomal protein L30-like [Cucurbita maxima])

HSP 1 Score: 221 bits (564), Expect = 1.03e-72
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTV+RTIRSSKGKLIILSNNCPPLRKSEI
Sbjct: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVIRTIRSSKGKLIILSNNCPPLRKSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 112
           EYYAMLAK+GVHHYNGSNVDLGTACGKY+RVSCLSIIDPGDSDIIKSLP +Q
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPSEQ 112

BLAST of Chy9G162450 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.4 bits (516), Expect = 9.8e-53
Identity = 94/112 (83.93%), Postives = 108/112 (96.43%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYN +NVDLGTACGKY+RVSCLSI+DPGDSDIIKSLPGDQ
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGDQ 112

BLAST of Chy9G162450 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-52
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKGKLI++S NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVHHYNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIKS+PGDQ
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGDQ 112

BLAST of Chy9G162450 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 3.2e-51
Identity = 91/112 (81.25%), Postives = 106/112 (94.64%), Query Frame = 0

Query: 1   MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGKLIILSNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKGKLI++S+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKIGVHHYNGSNVDLGTACGKYYRVSCLSIIDPGDSDIIKSLPGDQ 113
           EYYAMLAK+GVH YNG+NVDLGTACGKY+RVSCLSI+DPGDSDIIK+LPGDQ
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGDQ 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O498847.8e-5589.2960S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1[more]
Q9C8F71.4e-5183.93Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P... [more]
Q9M5M62.4e-5185.5960S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1[more]
Q8VZ194.0e-5182.1460S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1[more]
Q9LSA34.5e-5081.2560S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3DSZ78.7e-57100.0060S ribosomal protein L30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1JWW88.7e-57100.0060S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111489070 PE=3 ... [more]
A0A6J1FH918.7e-57100.0060S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111445673 PE=... [more]
A0A1S3CCQ48.7e-57100.0060S ribosomal protein L30-like OS=Cucumis melo OX=3656 GN=LOC103499296 PE=3 SV=1[more]
A0A0A0KQ982.5e-5699.11Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G409... [more]
Match NameE-valueIdentityDescription
XP_008460497.12.63e-75100.00PREDICTED: 60S ribosomal protein L30-like [Cucumis melo] >XP_022939971.1 60S rib... [more]
XP_004140311.11.07e-7499.1160S ribosomal protein L30 [Cucumis sativus] >KGN51019.1 hypothetical protein Csa... [more]
XP_022141723.12.54e-7397.3260S ribosomal protein L30-like [Momordica charantia][more]
XP_022952815.15.12e-7396.4360S ribosomal protein L30-like [Cucurbita moschata] >XP_023525455.1 60S ribosoma... [more]
XP_022990953.11.03e-7295.5460S ribosomal protein L30-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT1G36240.19.8e-5383.93Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G77940.12.9e-5282.14Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT3G18740.13.2e-5181.25Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 13..105
e-value: 3.5E-23
score: 81.1
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 3..107
e-value: 6.1E-53
score: 179.0
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 13..106
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 1..112
NoneNo IPR availablePANTHERPTHR11449:SF2660S RIBOSOMAL PROTEIN L30-LIKEcoord: 1..112
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 80..100
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00709RIBOSOMAL_L30E_1coord: 24..48
IPR000231Ribosomal protein L30eHAMAPMF_00481Ribosomal_L30ecoord: 12..109
score: 21.272532

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy9G162450.1Chy9G162450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome