Chy9G162380 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G162380
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH09: 5393330 .. 5395234 (+)
RNA-Seq Expression	Chy9G162380
Synteny	Chy9G162380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGTAATGATGAGATGGTAGTGCACAGCGGTGGATGCCATTGCAAGAGAATAAGATGGGAAGTGGAAGCAGCAAGCAGTGTCATAGCTTGGGATTGCAACTGTTCAAATTGCTCCATGAGAGGCAATACACATTTCACTGTTTCTTCTAAGCATTTTAAGCTTTTGGGAGACTCGCATAACTTCATTTCAACCTACAGTTTTGGAACTCATACTGCAAAGCATACCTTTTGTAAAGTTTGTGGGATCACTTCTTTCTACCATTCACGCTCAACTCCAGATGGGGTTTCGGTCAGTTTCAGATGTGTTGATCCTGGCATTTGGATCGTGTTCAGATTATCAAGTTTGATGGTACAAATTGGGAGCAAGCTCATCATCATTTGACACAAAACTAGTTATTAGTAATAGTGGGCTTGGGCTTCATAAAATTGATGTCACAAAACTAGTTATCAGTAATAGGGGACCTGGGCCTTGATCAAAGTCATGATTCAAGCGTGTAACTGTAATTTTATCGTCATTTAAGGAATAATAATAATAATTAATAATAATAATAATTAAGAATATAGTAAAAATTGTAAATATAGTAAAATTGTTGTCCATAGATTTGTATCGTCTATTCTTTTTACGACTTTTAATTATAGATTAATTTTTTTATATAAATTTGATTAATTTTTTTTTTAATTTTGTAATTAACTAATTTTTGTAAAAATTGTTATTTAAATATTTTTTGAAGTTGTGCGGTAGCTTGGTTAATTAATTAATAAATTTGGTTTTGATTATTAAAGGTTTTATGTCATTTAAGTTGGTATTATTTTTAAATTCAAACCAACTCCATCATTTAGAATTTTTAATCATTTAAAGAGCTATATATAATCTCTTCTTGTTTCATGGATAAGATGAAGAAAGGGCTACATATAAAAAACTAGAAAATTTTACAACCTTCACATTCTATCCTACTAAAAAATTCTATCCCTACTAAAAAAGACGAATCTTCATCTAAAAAATTAAGAGGTAAATTTTTTAGGTATAATATCCATTTTATTCTCTTTCAGTAACTCTTAAGATTCTAGATCTTCATCTTTCACTACAAGAAATTCGAGTTCTTCTGATGCATAAAAAGACGTCAGTAAAAACAATGTCAGTAAAAACAATGTCGGAACAAAGGTCAATCCTGATGCATAAAAATACACGTCGGTCGAGACAAGTATTTCCGACGTCGTAGTTCAAGACGTCGGGAGAAGATAAATAAATATTTAATTCTCTCATTTTTTTCGACATCTCTTTGCACGACGTCGAGAAAAGTTTAGTCATTTCCGACGTCATAAGTAAAACGCCGGGGGAAGTGAAAAATATTTTCGATGTCGTAGTTCAAGATGTCGGGAGAAAATAAATACATATTTAATTCACGCATTTTTCCCAACGTCTCTTTGCATGACGTTGGGAAAAGTTTAGTCATTCCCAACGTCATAAGTAAAACGCCGAAAGAAGTAAAAAATATTCCCGACGTCGGAGTTCAAGACGTTGGGAGAAGATAAATAAATATTTAATTATCGCATTTTTCCTGACGTCTCTTTGCACAGCGTCAGAAATAGTTCACTTCTCCCGACGTCATAAGTAAAACGTCAGGAGAAGTGAAAACTATTTTCGATGTTTTACTTATGGCATCGGGAATAGGGGGTGTCTCCCGACATTTTTGATGTGCGTCGGAAATTCTCATATTAAAACCCCCTTCAGTTCTGTAATTCACAGAACTGAAAAGGAGAAGGCCAAGAGAGTTTAGAGAGAGACCAAGAAGGAGAGAGATCCACGCCATCGCTCGCTGTCGTCCTCATCGTCGTTCTTGTCCAACCGTTCATCGTCATCTCCGTTGTCACCCTTCATTCCGGTAAGTGGTTTAGTTTAG

mRNA sequence

ATGGGCGTAATGATGAGATGGTAGTGCACAGCGGTGGATGCCATTGCAAGAGAATAAGATGGGAAGTGGAAGCAGCAAGCAGTGTCATAGCTTGGGATTGCAACTGTTCAAATTGCTCCATGAGAGGCAATACACATTTCACTGTTTCTTCTAAGCATTTTAAGCTTTTGGGAGACTCGCATAACTTCATTTCAACCTACAGTTTTGGAACTCATACTGCAAAGCATACCTTTTGTAAAGTTTGTGGGATCACTTCTTTCTACCATTCACGCTCAACTCCAGATGGGGTTTCGGTCAGTTTCAGATGTGTTGATCCTGGCATTTGGATCGTGTTCAGATTATCAAGTTTGATGAGTTTAGAGAGAGACCAAGAAGGAGAGAGATCCACGCCATCGCTCGCTGTCGTCCTCATCGTCGTTCTTGTCCAACCGTTCATCGTCATCTCCGTTGTCACCCTTCATTCCGGTAAGTGGTTTAGTTTAG

Coding sequence (CDS)

ATGGGCGTAATGATGAGATGGTAGTGCACAGCGGTGGATGCCATTGCAAGAGAATAAGATGGGAAGTGGAAGCAGCAAGCAGTGTCATAGCTTGGGATTGCAACTGTTCAAATTGCTCCATGAGAGGCAATACACATTTCACTGTTTCTTCTAAGCATTTTAAGCTTTTGGGAGACTCGCATAACTTCATTTCAACCTACAGTTTTGGAACTCATACTGCAAAGCATACCTTTTGTAAAGTTTGTGGGATCACTTCTTTCTACCATTCACGCTCAACTCCAGATGGGGTTTCGGTCAGTTTCAGATGTGTTGATCCTGGCATTTGGATCGTGTTCAGATTATCAAGTTTGATGAGTTTAGAGAGAGACCAAGAAGGAGAGAGATCCACGCCATCGCTCGCTGTCGTCCTCATCGTCGTTCTTGTCCAACCGTTCATCGTCATCTCCGTTGTCACCCTTCATTCCGGTAAGTGGTTTAGTTTAG

Protein sequence

MGVMMRW*CTAVDAIARE*DGKWKQQAVS*LGIATVQIAP*EAIHISLFLLSILSFWETRITSFQPTVLELILQSIPFVKFVGSLLSTIHAQLQMGFRSVSDVLILAFGSCSDYQV**V*RETKKERDPRHRSLSSSSSFLSNRSSSSPLSPFIPVSGLV*

Homology

[Close]

BLAST of Chy9G162380 vs. NCBI nr
Match: KAE8648420.1 (hypothetical protein Csa_007866 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 2.60e-05
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 121 RETKKERDPRHRSLSSSSSFLSNRSSSSPLSPFIPVSGLV 160
           RE +KE DPRH SLS    FLSNRSSSSPLSPFI VSGLV
Sbjct: 121 REIEKETDPRHCSLS----FLSNRSSSSPLSPFIQVSGLV 156

The following BLAST results are available for this feature:

BLAST of Chy9G162380 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G162380 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G162380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648420.1	2.60e-05	77.50	hypothetical protein Csa_007866 [Cucumis sativus]	[more]

BLAST of Chy9G162380 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G162380.1	Chy9G162380.1	mRNA