Chy9G161840 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G161840
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Homeodomain-like superfamily protein
Location	chrH09: 4263051 .. 4263314 (+)
RNA-Seq Expression	Chy9G161840
Synteny	Chy9G161840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAGGACGATCCATGAGGGCACCGAGAATGCGGTGGACGAGCAGCCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGCGGCCATGAAAGTAAAATTAAATTTTTTCTATCGTCTTTATTTATATTTTGCTCTTTATTCTTTCTAATTTGATTAAATAATGTTGTGTTTGTTTAAGGAGCTACGCCTAAATCAGTTCTAGAGCTCATGGATGTGAAGGATCTAACGTTGGCTCACGTCAAAAGCCATTTACAG

mRNA sequence

ATGGCGAGAGGACGATCCATGAGGGCACCGAGAATGCGGTGGACGAGCAGCCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGCGGCCATGAAAGAGCTACGCCTAAATCAGTTCTAGAGCTCATGGATGTGAAGGATCTAACGTTGGCTCACGTCAAAAGCCATTTACAG

Coding sequence (CDS)

ATGGCGAGAGGACGATCCATGAGGGCACCGAGAATGCGGTGGACGAGCAGCCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGCGGCCATGAAAGAGCTACGCCTAAATCAGTTCTAGAGCTCATGGATGTGAAGGATCTAACGTTGGCTCACGTCAAAAGCCATTTACAG

Protein sequence

MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ

Homology

[Close]

BLAST of Chy9G161840 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-24
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           M   RSMRAPRMRWTSSLHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 211 MPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 269

[Close]

BLAST of Chy9G161840 vs. ExPASy Swiss-Prot
Match: Q0J235 (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 6.4e-24
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 5   RSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           RSMRAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 320 RSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 374

[Close]

BLAST of Chy9G161840 vs. ExPASy Swiss-Prot
Match: Q9C616 (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 5   RSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           RSMRAPRMRWT++LHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 209 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 263

[Close]

BLAST of Chy9G161840 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-22
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 5   RSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           RS+RAPRMRWTS+LHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 101 RSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 155

[Close]

BLAST of Chy9G161840 vs. ExPASy Swiss-Prot
Match: Q941I2 (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-21
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 5   RSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           R +RAPRMRWT++LHA FVHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ
Sbjct: 160 RGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQ 214

[Close]

BLAST of Chy9G161840 vs. ExPASy TrEMBL
Match: A0A0A0KTP4 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G429440 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
          MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 1  MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 59

[Close]

BLAST of Chy9G161840 vs. ExPASy TrEMBL
Match: A0A1S3CJ01 (probable transcription factor KAN2 OS=Cucumis melo OX=3656 GN=LOC103501386 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.1e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           +ARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 143 VARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 201

[Close]

BLAST of Chy9G161840 vs. ExPASy TrEMBL
Match: A0A6J1JTN2 (transcription repressor KAN1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111487408 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.3e-23
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           MARGR  RAPRMRWTS+LHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 88  MARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 146

[Close]

BLAST of Chy9G161840 vs. ExPASy TrEMBL
Match: A0A6J1JNA8 (transcription repressor KAN1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487408 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.3e-23
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           MARGR  RAPRMRWTS+LHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 88  MARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 146

[Close]

BLAST of Chy9G161840 vs. ExPASy TrEMBL
Match: A0A6J1JJ48 (transcription repressor KAN1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487408 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.3e-23
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           MARGR  RAPRMRWTS+LHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 88  MARGRCTRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 146

[Close]

BLAST of Chy9G161840 vs. NCBI nr
Match: KAE8648440.1 (hypothetical protein Csa_008163 [Cucumis sativus])

HSP 1 Score: 119 bits (299), Expect = 1.38e-32
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 59
          MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 1  MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 59

[Close]

BLAST of Chy9G161840 vs. NCBI nr
Match: XP_031741145.1 (probable transcription factor KAN2 isoform X3 [Cucumis sativus])

HSP 1 Score: 119 bits (299), Expect = 1.03e-31
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 59
           MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 139 MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 197

[Close]

BLAST of Chy9G161840 vs. NCBI nr
Match: XP_031741144.1 (probable transcription factor KAN2 isoform X2 [Cucumis sativus])

HSP 1 Score: 119 bits (299), Expect = 1.08e-31
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 59
           MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 139 MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 197

[Close]

BLAST of Chy9G161840 vs. NCBI nr
Match: XP_011655242.2 (probable transcription factor KAN2 isoform X1 [Cucumis sativus])

HSP 1 Score: 119 bits (299), Expect = 1.19e-31
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 59
           MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 139 MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 197

[Close]

BLAST of Chy9G161840 vs. NCBI nr
Match: XP_008463176.1 (PREDICTED: probable transcription factor KAN2 [Cucumis melo])

HSP 1 Score: 118 bits (295), Expect = 2.78e-31
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 59
           +ARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 143 VARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 201

[Close]

BLAST of Chy9G161840 vs. TAIR 10
Match: AT5G16560.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-25
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   MARGRSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           M   RSMRAPRMRWTSSLHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 211 MPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 269

[Close]

BLAST of Chy9G161840 vs. TAIR 10
Match: AT1G32240.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-24
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 5   RSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           RSMRAPRMRWT++LHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 209 RSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 263

[Close]

BLAST of Chy9G161840 vs. TAIR 10
Match: AT5G42630.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-23
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 5   RSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           RS+RAPRMRWTS+LHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 101 RSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 155

[Close]

BLAST of Chy9G161840 vs. TAIR 10
Match: AT5G42630.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-23
Identity = 50/55 (90.91%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 5   RSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           RS+RAPRMRWTS+LHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 101 RSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 155

[Close]

BLAST of Chy9G161840 vs. TAIR 10
Match: AT4G17695.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 7.2e-23
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 5   RSMRAPRMRWTSSLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 60
           R +RAPRMRWT++LHA FVHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ
Sbjct: 160 RGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQ 214

The following BLAST results are available for this feature:

BLAST of Chy9G161840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WJ9	2.2e-24	93.22	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]
Q0J235	6.4e-24	96.36	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
Q9C616	1.4e-23	94.55	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
Q9FJV5	2.1e-22	90.91	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
Q941I2	1.0e-21	87.27	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]

BLAST of Chy9G161840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTP4	1.7e-24	100.00	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G429440 PE=4 S...	[more]
A0A1S3CJ01	5.1e-24	98.31	probable transcription factor KAN2 OS=Cucumis melo OX=3656 GN=LOC103501386 PE=4 ...	[more]
A0A6J1JTN2	7.3e-23	94.92	transcription repressor KAN1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1JNA8	7.3e-23	94.92	transcription repressor KAN1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1JJ48	7.3e-23	94.92	transcription repressor KAN1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Chy9G161840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648440.1	1.38e-32	100.00	hypothetical protein Csa_008163 [Cucumis sativus]	[more]
XP_031741145.1	1.03e-31	100.00	probable transcription factor KAN2 isoform X3 [Cucumis sativus]	[more]
XP_031741144.1	1.08e-31	100.00	probable transcription factor KAN2 isoform X2 [Cucumis sativus]	[more]
XP_011655242.2	1.19e-31	100.00	probable transcription factor KAN2 isoform X1 [Cucumis sativus]	[more]
XP_008463176.1	2.78e-31	98.31	PREDICTED: probable transcription factor KAN2 [Cucumis melo]	[more]

BLAST of Chy9G161840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16560.1	1.6e-25	93.22	Homeodomain-like superfamily protein	[more]
AT1G32240.1	1.0e-24	94.55	Homeodomain-like superfamily protein	[more]
AT5G42630.1	1.5e-23	90.91	Homeodomain-like superfamily protein	[more]
AT5G42630.2	1.5e-23	90.91	Homeodomain-like superfamily protein	[more]
AT4G17695.1	7.2e-23	87.27	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 11..59 e-value: 2.0E-5 score: 24.7
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 10..59 e-value: 5.4E-22 score: 75.9
None	No IPR available	GENE3D	1.10.10.60		coord: 9..59 e-value: 2.0E-24 score: 87.5
None	No IPR available	PANTHER	PTHR31496:SF3	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 5..59
IPR044847	Transcription repressor KANADI	PANTHER	PTHR31496	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 5..59
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 7..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G161840.1	Chy9G161840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003677	DNA binding