Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAACTACACCACATGAAATCTCCCTAGACATGAATGAACCCTATACCTTTATCATTGCAGTCACATATAGAAATCCTGGAATAAGCAGTTGTACGTGGGGGGGAGATGCATCAGATTGCCTGCCAATTTACATCAAAATGCAGAGGCCTTCACCAGTCAACAGCCCTCAGTTTGGGAACACATTTCTTAGTTCAACTTTTCAGGCCATTTTAGGCTTGTTTCTCAGCTTAAACACTTCATCTCCTTCACCTCTTTCAGTGTTTTTTGGGGCTATTATGTTGACTGCCTTCGTATTTTCCTTTGGAGTTATCCTTCAAAAGCCATTCCCAAAAACTGCACAACTGTTGCAAAAGTTCGGTGCTCTATTTGCTGCAATTGGTACCTGCATCATAGGAAGTCTTCTACTCTATCCAAACCTCACTTGGATCAGTTGGCTGGCGTGTGGCCTCATCTTGTCAGCCTTTATTATATCATTCAAGTGAATATGACAGAATGTGCATCCCAATGTCTGGAGGTGGGCAGAGGGTGCAATTCTGTAGAATCCATGCCCATGTGTTTTTATCTCTTTGATAGTCTCTGTTTCTTGACCTTGTGTGGTTCATCACCAAGACAACATCTGCTCCAATTTCCCTGAAAATTCATGTTATTCTACAACTTATATAATGACATGATAACTCTGCCTGTGTCGTGCCTTAAGCATCATTTCTTCCACGCAGCCGGTCCCAAGCCCGGACAAAGGAGGAGGGTAGTGTCATCAGACCATTGGATCTTGAGTTGTAA
mRNA sequence
ATGGCAGAAACTACACCACATGAAATCTCCCTAGACATGAATGAACCCTATACCTTTATCATTGCAGTCACATATAGAAATCCTGGAATAAGCAGTTGTACGTGGGGGGGAGATGCATCAGATTGCCTGCCAATTTACATCAAAATGCAGAGGCCTTCACCAGTCAACAGCCCTCAGTTTGGGAACACATTTCTTAGTTCAACTTTTCAGGCCATTTTAGGCTTGTTTCTCAGCTTAAACACTTCATCTCCTTCACCTCTTTCAGTGTTTTTTGGGGCTATTATGTTGACTGCCTTCGTATTTTCCTTTGGAGTTATCCTTCAAAAGCCATTCCCAAAAACTGCACAACTGTTGCAAAAGTTCGGTGCTCTATTTGCTGCAATTGGTACCTGCATCATAGGAAGTCTTCTACTCTATCCAAACCTCACTTGGATCAGTTGGCTGGCGTGTGGCCTCATCTTCCGGTCCCAAGCCCGGACAAAGGAGGAGGGTAGTGTCATCAGACCATTGGATCTTGAGTTGTAA
Coding sequence (CDS)
ATGGCAGAAACTACACCACATGAAATCTCCCTAGACATGAATGAACCCTATACCTTTATCATTGCAGTCACATATAGAAATCCTGGAATAAGCAGTTGTACGTGGGGGGGAGATGCATCAGATTGCCTGCCAATTTACATCAAAATGCAGAGGCCTTCACCAGTCAACAGCCCTCAGTTTGGGAACACATTTCTTAGTTCAACTTTTCAGGCCATTTTAGGCTTGTTTCTCAGCTTAAACACTTCATCTCCTTCACCTCTTTCAGTGTTTTTTGGGGCTATTATGTTGACTGCCTTCGTATTTTCCTTTGGAGTTATCCTTCAAAAGCCATTCCCAAAAACTGCACAACTGTTGCAAAAGTTCGGTGCTCTATTTGCTGCAATTGGTACCTGCATCATAGGAAGTCTTCTACTCTATCCAAACCTCACTTGGATCAGTTGGCTGGCGTGTGGCCTCATCTTCCGGTCCCAAGCCCGGACAAAGGAGGAGGGTAGTGTCATCAGACCATTGGATCTTGAGTTGTAA
Protein sequence
MAETTPHEISLDMNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPVNSPQFGNTFLSSTFQAILGLFLSLNTSSPSPLSVFFGAIMLTAFVFSFGVILQKPFPKTAQLLQKFGALFAAIGTCIIGSLLLYPNLTWISWLACGLIFRSQARTKEEGSVIRPLDLEL*
Homology
BLAST of Chy9G161350 vs. ExPASy TrEMBL
Match:
A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)
HSP 1 Score: 251.9 bits (642), Expect = 1.9e-63
Identity = 129/155 (83.23%), Postives = 136/155 (87.74%), Query Frame = 0
Query: 1 MAETTPHEISLDMNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPVNSPQF 60
MAET PHEISLDMN+ + I AVT RNPGISSCTWGG ASDCLPIYIKMQRPSPVNSPQF
Sbjct: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60
Query: 61 GNTFLSSTFQAILGLFLSLNTSSPSPL-SVFFGAIMLTAFVFSF-GVILQKPFPKTAQLL 120
GNTFLS TFQAI+GLFLSLN SS SPL S F A+MLT+F+FS+ GVILQKPFPKTAQLL
Sbjct: 61 GNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120
Query: 121 QKFGALFAAIGTCIIGSLLLYPNLTWISWLACGLI 154
Q FGALFAAIGTCIIGSLLLYPN TWI WLA GLI
Sbjct: 121 QTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLI 155
BLAST of Chy9G161350 vs. ExPASy TrEMBL
Match:
A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)
HSP 1 Score: 243.0 bits (619), Expect = 9.0e-61
Identity = 124/154 (80.52%), Postives = 131/154 (85.06%), Query Frame = 0
Query: 1 MAETTPHEISLDMNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPVNSPQF 60
MAET PHEISLDMNE Y+FI AVT RNPGISSCTWG ASDCLPIYIKMQRPSPVNSPQF
Sbjct: 1 MAETKPHEISLDMNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPSPVNSPQF 60
Query: 61 GNTFLSSTFQAILGLFLSLNTSSPSPLSVFFGAIMLTAFVFSF-GVILQKPFPKTAQLLQ 120
GNTF+SS FQAILGLFL+L SP PLS G +MLTAFVFSF GV+LQKPFPK A LLQ
Sbjct: 61 GNTFVSSNFQAILGLFLNL-PPSPPPLSELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQ 120
Query: 121 KFGALFAAIGTCIIGSLLLYPNLTWISWLACGLI 154
FGAL AAIG CI+GS LL+PNLTWI WLACGLI
Sbjct: 121 MFGALLAAIGVCIMGSPLLHPNLTWIRWLACGLI 153
BLAST of Chy9G161350 vs. ExPASy TrEMBL
Match:
A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 8.5e-27
Identity = 74/154 (48.05%), Postives = 95/154 (61.69%), Query Frame = 0
Query: 3 ETTPHEISLDMNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPVNSPQ--- 62
E++ +IS+DMN Y+ I ++ RNP I+ LPI I MQ SP NS +
Sbjct: 2 ESSSQQISIDMNHLYSLITSINERNPEING----------LPICIIMQTASPANSSKTEN 61
Query: 63 -FGNTFLSSTFQAILGLFLSLNTSSPSPLSVFFGAIMLTAFVFSF-GVILQKPFPKTAQL 122
G T L TFQA+L LF++ +TSSP L+ FGA +L +F SF GV LQ FP+ A L
Sbjct: 62 NVGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALL 121
Query: 123 LQKFGALFAAIGTCIIGSLLLYPNLTWISWLACG 152
+K GAL AAIG CI+ SLL++ N WISWLACG
Sbjct: 122 FEKIGALIAAIGVCILASLLIHQNFAWISWLACG 145
BLAST of Chy9G161350 vs. ExPASy TrEMBL
Match:
A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 72/144 (50.00%), Postives = 88/144 (61.11%), Query Frame = 0
Query: 13 MNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPVNSPQ----FGNTFLSST 72
MNE Y+FI A+ RNP I+S LPI I MQRPSP NS + G T L T
Sbjct: 1 MNELYSFITAINERNPEINS----------LPICITMQRPSPANSSKTENNVGKTILGLT 60
Query: 73 FQAILGLFLSLNTSSPSPLSVFFGAIMLTAFVFSF-GVILQKPFPKTAQLLQKFGALFAA 132
FQA+L LF++ SSP L+ F A +L +F SF G+ LQ FP+ A L +K GAL AA
Sbjct: 61 FQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAA 120
Query: 133 IGTCIIGSLLLYPNLTWISWLACG 152
IG CI+ SLL++ N WISWLA G
Sbjct: 121 IGVCIVASLLIHQNFAWISWLASG 134
BLAST of Chy9G161350 vs. ExPASy TrEMBL
Match:
A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 8.3e-22
Identity = 64/153 (41.83%), Postives = 92/153 (60.13%), Query Frame = 0
Query: 4 TTPHEISLDMNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPV---NSPQF 63
+T H+ SLDM+ +FI ++ RN G+ C S+CLP++I+MQ+ +S +
Sbjct: 3 STSHQTSLDMSAFSSFIRTISQRNYGLGCCC---TPSNCLPVFIRMQQSPQATADSSQKL 62
Query: 64 GNTFLSSTFQAILGLFLSLNTSSPSPLSV-FFGAIMLTAFVFSFGVI-LQKPFPKTAQLL 123
G LS +FQA+L LF+S +SP PL + FF A + +F SF + L FP+TA L
Sbjct: 63 GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 122
Query: 124 QKFGALFAAIGTCIIGS-LLLYPNLTWISWLAC 151
+K GALF+A G C I S LL++ N WI W+AC
Sbjct: 123 EKVGALFSAFGVCFIASFLLVHQNFAWICWVAC 152
BLAST of Chy9G161350 vs. NCBI nr
Match:
KGN49806.1 (hypothetical protein Csa_004683 [Cucumis sativus])
HSP 1 Score: 251 bits (641), Expect = 1.30e-82
Identity = 129/155 (83.23%), Postives = 136/155 (87.74%), Query Frame = 0
Query: 1 MAETTPHEISLDMNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPVNSPQF 60
MAET PHEISLDMN+ + I AVT RNPGISSCTWGG ASDCLPIYIKMQRPSPVNSPQF
Sbjct: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60
Query: 61 GNTFLSSTFQAILGLFLSLNTSSPSPL-SVFFGAIMLTAFVFSF-GVILQKPFPKTAQLL 120
GNTFLS TFQAI+GLFLSLN SS SPL S F A+MLT+F+FS+ GVILQKPFPKTAQLL
Sbjct: 61 GNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120
Query: 121 QKFGALFAAIGTCIIGSLLLYPNLTWISWLACGLI 153
Q FGALFAAIGTCIIGSLLLYPN TWI WLA GLI
Sbjct: 121 QTFGALFAAIGTCIIGSLLLYPNFTWICWLAAGLI 155
BLAST of Chy9G161350 vs. NCBI nr
Match:
KAA0050244.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98162.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 242 bits (618), Expect = 3.87e-79
Identity = 124/154 (80.52%), Postives = 131/154 (85.06%), Query Frame = 0
Query: 1 MAETTPHEISLDMNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPVNSPQF 60
MAET PHEISLDMNE Y+FI AVT RNPGISSCTWG ASDCLPIYIKMQRPSPVNSPQF
Sbjct: 1 MAETKPHEISLDMNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPSPVNSPQF 60
Query: 61 GNTFLSSTFQAILGLFLSLNTSSPSPLSVFFGAIMLTAFVFSF-GVILQKPFPKTAQLLQ 120
GNTF+SS FQAILGLFL+L S P PLS G +MLTAFVFSF GV+LQKPFPK A LLQ
Sbjct: 61 GNTFVSSNFQAILGLFLNLPPSPP-PLSELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQ 120
Query: 121 KFGALFAAIGTCIIGSLLLYPNLTWISWLACGLI 153
FGAL AAIG CI+GS LL+PNLTWI WLACGLI
Sbjct: 121 MFGALLAAIGVCIMGSPLLHPNLTWIRWLACGLI 153
BLAST of Chy9G161350 vs. NCBI nr
Match:
KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])
HSP 1 Score: 130 bits (327), Expect = 5.12e-35
Identity = 74/154 (48.05%), Postives = 95/154 (61.69%), Query Frame = 0
Query: 3 ETTPHEISLDMNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPVNSPQ--- 62
E++ +IS+DMN Y+ I ++ RNP I+ LPI I MQ SP NS +
Sbjct: 2 ESSSQQISIDMNHLYSLITSINERNPEING----------LPICIIMQTASPANSSKTEN 61
Query: 63 -FGNTFLSSTFQAILGLFLSLNTSSPSPLSVFFGAIMLTAFVFSF-GVILQKPFPKTAQL 122
G T L TFQA+L LF++ +TSSP L+ FGA +L +F SF GV LQ FP+ A L
Sbjct: 62 NVGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALL 121
Query: 123 LQKFGALFAAIGTCIIGSLLLYPNLTWISWLACG 151
+K GAL AAIG CI+ SLL++ N WISWLACG
Sbjct: 122 FEKIGALIAAIGVCILASLLIHQNFAWISWLACG 145
BLAST of Chy9G161350 vs. NCBI nr
Match:
KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 125 bits (314), Expect = 3.41e-33
Identity = 72/144 (50.00%), Postives = 88/144 (61.11%), Query Frame = 0
Query: 13 MNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPVNSPQ----FGNTFLSST 72
MNE Y+FI A+ RNP I+S LPI I MQRPSP NS + G T L T
Sbjct: 1 MNELYSFITAINERNPEINS----------LPICITMQRPSPANSSKTENNVGKTILGLT 60
Query: 73 FQAILGLFLSLNTSSPSPLSVFFGAIMLTAFVFSF-GVILQKPFPKTAQLLQKFGALFAA 132
FQA+L LF++ SSP L+ F A +L +F SF G+ LQ FP+ A L +K GAL AA
Sbjct: 61 FQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAA 120
Query: 133 IGTCIIGSLLLYPNLTWISWLACG 151
IG CI+ SLL++ N WISWLA G
Sbjct: 121 IGVCIVASLLIHQNFAWISWLASG 134
BLAST of Chy9G161350 vs. NCBI nr
Match:
KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])
HSP 1 Score: 114 bits (284), Expect = 1.90e-28
Identity = 64/153 (41.83%), Postives = 92/153 (60.13%), Query Frame = 0
Query: 4 TTPHEISLDMNEPYTFIIAVTYRNPGISSCTWGGDASDCLPIYIKMQRPSPV---NSPQF 63
+T H+ SLDM+ +FI ++ RN G+ C S+CLP++I+MQ+ +S +
Sbjct: 3 STSHQTSLDMSAFSSFIRTISQRNYGLGCCC---TPSNCLPVFIRMQQSPQATADSSQKL 62
Query: 64 GNTFLSSTFQAILGLFLSLNTSSPSPLSV-FFGAIMLTAFVFSFGVI-LQKPFPKTAQLL 123
G LS +FQA+L LF+S +SP PL + FF A + +F SF + L FP+TA L
Sbjct: 63 GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 122
Query: 124 QKFGALFAAIGTCIIGS-LLLYPNLTWISWLAC 150
+K GALF+A G C I S LL++ N WI W+AC
Sbjct: 123 EKVGALFSAFGVCFIASFLLVHQNFAWICWVAC 152
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KQ03 | 1.9e-63 | 83.23 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1 | [more] |
| A0A5D3BEH8 | 9.0e-61 | 80.52 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A0A0KJN8 | 8.5e-27 | 48.05 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1 | [more] |
| A0A5A7U7U1 | 2.7e-25 | 50.00 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A0A0KJP2 | 8.3e-22 | 41.83 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN49806.1 | 1.30e-82 | 83.23 | hypothetical protein Csa_004683 [Cucumis sativus] | [more] |
| KAA0050244.1 | 3.87e-79 | 80.52 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
| KGN49803.1 | 5.12e-35 | 48.05 | hypothetical protein Csa_004681 [Cucumis sativus] | [more] |
| KAA0050246.1 | 3.41e-33 | 50.00 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
| KGN49808.1 | 1.90e-28 | 41.83 | hypothetical protein Csa_004650 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
