Chy9G159570 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G159570
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH09: 1995623 .. 1996344 (-)
RNA-Seq Expression	Chy9G159570
Synteny	Chy9G159570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAATGATGGTTCAAACGAACGACGACTATCATGATGCAGGACCTAATTTTCCAGGAGCCTATCATGATTCAAAGGTCAAATAACCCACATTGTGCTCCTCTTGACAACACATAAATTATCTAAATCATATATATGATTGTCTTTTAAATGTATTTTCGGATCATTATGCATGGACTTCAAATTTCGAGTGTGTAATAATAATCCATGCACGTGTATGGATGTGAAAAGTCTTTAAATTAGAGTAATCCATATGCATATTATTATTGAACATAATTGTGTTTTATGTTTGTAGAAAACGAGTGCAGGAAAAACAAGAAAGATTATGGTTCAAACAAACGATGACTATCATGACGCAGGACCTAATTCCCCAGGAGCCTATCATGATCTAAAGGTCTAATAACCCATATTATGCTCCTTTTGCAACACATTAATTATCTAAATTATATATATATAATTGTCCTTTAAAATGTATTTTTCTTATCAATATGCATTGACTTCAAATTTCGAGTATGTAATAATAATCCATGCACGTGCATGGACATGAAATTTTTTTAAATTAGAGTAATATAATACATATGCATATTATTGAACATAATTATGTTTTATATGTTTGCAGAAAACTAGTGAAGGAAAAACGAGAAAGATGATAGTTCAAACAAACGACGACTATCATGATGCAGGACCGAATTTTCCAGGAGCCTATCATGATTCAAAG

mRNA sequence

ATGAAAGAAATGATGGTTCAAACGAACGACGACTATCATGATGCAGGACCTAATTTTCCAGGAGCCTATCATGATTCAAAGAAAACGAGTGCAGGAAAAACAAGAAAGATTATGGTTCAAACAAACGATGACTATCATGACGCAGGACCTAATTCCCCAGGAGCCTATCATGATCTAAAGAAAACTAGTGAAGGAAAAACGAGAAAGATGATAGTTCAAACAAACGACGACTATCATGATGCAGGACCGAATTTTCCAGGAGCCTATCATGATTCAAAG

Coding sequence (CDS)

ATGAAAGAAATGATGGTTCAAACGAACGACGACTATCATGATGCAGGACCTAATTTTCCAGGAGCCTATCATGATTCAAAGAAAACGAGTGCAGGAAAAACAAGAAAGATTATGGTTCAAACAAACGATGACTATCATGACGCAGGACCTAATTCCCCAGGAGCCTATCATGATCTAAAGAAAACTAGTGAAGGAAAAACGAGAAAGATGATAGTTCAAACAAACGACGACTATCATGATGCAGGACCGAATTTTCCAGGAGCCTATCATGATTCAAAG

Protein sequence

MKEMMVQTNDDYHDAGPNFPGAYHDSKKTSAGKTRKIMVQTNDDYHDAGPNSPGAYHDLKKTSEGKTRKMIVQTNDDYHDAGPNFPGAYHDSK

Homology

[Close]

BLAST of Chy9G159570 vs. NCBI nr
Match: KAF4653734.1 (hypothetical protein FOZ61_008737, partial [Perkinsus olseni])

HSP 1 Score: 48.5 bits (114), Expect = 6.34e-04
Identity = 26/82 (31.71%), Postives = 36/82 (43.90%), Query Frame = 0


Query: 11  DYHDAGPNFPGAYHDSKKTSAGKTRKIMVQTNDDYHDAGPNSPGAYHDLKKTSEGKTRKM 70
           ++HD+ P   G Y+DS     G+          DYHD+ P + G YHD      G     
Sbjct: 203 EHHDSPPPPTGEYYDSPPPPTGEYYDSPPPPTGDYHDSPPPATGDYHDSPPPPTGDYHNS 262

Query: 71  IVQTNDDYHDAGPNFPGAYHDS 92
                 +YHD+ P   G Y+DS
Sbjct: 263 PPPPTGEYHDSPPPPAGEYYDS 284

The following BLAST results are available for this feature:

BLAST of Chy9G159570 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G159570 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G159570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4653734.1	6.34e-04	31.71	hypothetical protein FOZ61_008737, partial [Perkinsus olseni]	[more]

BLAST of Chy9G159570 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G159570.1	Chy9G159570.1	mRNA