Chy9G157190 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G157190
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	MICOS complex subunit Mic10
Location	chrH09: 53968 .. 54843 (+)
RNA-Seq Expression	Chy9G157190
Synteny	Chy9G157190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGAACAAAGGGGTTGTGCCTCCACCCCACGATTTGAATGCCAAGTGGGATGCTTGTCTTGATTTGACGCTGCGTCGATTCGTTTACTCTTCCTTCGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGTAATGATAATCATAATTCCTTCTCACCCTTTCTCTTTTCTTATTTCCACCTTTTTATATTTTCCTAATCTTCACATGGCGGATGTTACAGTTTTAACCCAAGCATTTCTTTCTCTCGCTATTATTTCCTATAAACTGGAATTGCATGTTATTACATTGGATCAATCGTATATTAAGAATTTTTTTCGTCTGTCGATTTGGAATGTATGTTTATCAACAAATGAAAGAGATGTACAGATTTATTCTGCGACGAGACTGTAAACTTAAGAAATTTAGGTTCGCTTAACTTGGCTCTTCACATATTTGGTGAGCATTTTTCTCTGTACTACTCGTGTATCCATTTACAAATATCAGGATTTCTACGTTTTTGTTAAGCAAACTTGTGAATTTGAACCCAGTCAGCCAATTGCAGACATGCAGGATTTTTGCAAAATAAATGGCCTCTTTTGTTGTTTATGTTGAAGTACCGAACTCGTTAATCAATGTTTTATTATATTTCTGAAACTTCAGTTGTTTGATTCTAATAAACTCACTAATGAGCACTGTATCGTGATTAACAACTAGGGAGTCCGGTGACTCGTTGGGCTTCTATAGCTTTTGGTGCTGGATTGGGCATTGGATCAGCATACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCCAAATTCACATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGTGAAATTCACATGTACAGTAAAACCATCTCCTTGA

mRNA sequence

ATGGCTGAGAACAAAGGGGTTGTGCCTCCACCCCACGATTTGAATGCCAAGTGGGATGCTTGTCTTGATTTGACGCTGCGTCGATTCGTTTACTCTTCCTTCGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGGAGTCCGGTGACTCGTTGGGCTTCTATAGCTTTTGGTGCTGGATTGGGCATTGGATCAGCATACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCCAAATTCACATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGTGAAATTCACATGTACAGTAAAACCATCTCCTTGA

Coding sequence (CDS)

ATGGCTGAGAACAAAGGGGTTGTGCCTCCACCCCACGATTTGAATGCCAAGTGGGATGCTTGTCTTGATTTGACGCTGCGTCGATTCGTTTACTCTTCCTTCGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGGAGTCCGGTGACTCGTTGGGCTTCTATAGCTTTTGGTGCTGGATTGGGCATTGGATCAGCATACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCCAAATTCACATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGTGAAATTCACATGTACAGTAAAACCATCTCCTTGA

Protein sequence

MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKFTCTVKPSP*

Homology

[Close]

BLAST of Chy9G157190 vs. ExPASy TrEMBL
Match: A0A5D3BKW9 (MICOS complex subunit Mic10 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00020 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.1e-49
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
           MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1   MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61  GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKFTCTVKPSP 104
           GIGSAYTDCNSLF+GSTAKFTSPKITEAQPSQVKFT  VK SP
Sbjct: 61  GIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQVKFTFPVKSSP 103

[Close]

BLAST of Chy9G157190 vs. ExPASy TrEMBL
Match: A0A0A0KUY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G652290 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDL+AKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 94
          GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 93

[Close]

BLAST of Chy9G157190 vs. ExPASy TrEMBL
Match: A0A1S3CAS1 (MICOS complex subunit Mic10 OS=Cucumis melo OX=3656 GN=LOC103498730 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 93
          GIGSAYTDCNSLF+GSTAKFTSPKITEAQPSQ
Sbjct: 61 GIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQ 92

[Close]

BLAST of Chy9G157190 vs. ExPASy TrEMBL
Match: A0A6J1I917 (uncharacterized protein LOC111472604 OS=Cucurbita maxima OX=3661 GN=LOC111472604 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 87/92 (94.57%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1   MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
           MAENK VVPPPHDLNAKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 43  MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 102

Query: 61  GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 93
           GIGSAYTDCNSLFEGSTAKF SPKIT  QPSQ
Sbjct: 103 GIGSAYTDCNSLFEGSTAKFASPKITGPQPSQ 134

[Close]

BLAST of Chy9G157190 vs. ExPASy TrEMBL
Match: A0A6J1EC46 (uncharacterized protein LOC111432720 OS=Cucurbita moschata OX=3662 GN=LOC111432720 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.6e-41
Identity = 85/92 (92.39%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENK VVPPPHDLNAKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKDVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 93
          GIGSAYTDCNSLFEGSTAKF SPK+T  Q SQ
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFASPKLTGPQTSQ 92

[Close]

BLAST of Chy9G157190 vs. NCBI nr
Match: KAA0039215.1 (MICOS complex subunit Mic10 isoform X2 [Cucumis melo var. makuwa] >TYK00403.1 MICOS complex subunit Mic10 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (519), Expect = 3.91e-66
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
           MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1   MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61  GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKFTCTVKPSP 103
           GIGSAYTDCNSLF+GSTAKFTSPKITEAQPSQVKFT  VK SP
Sbjct: 61  GIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQVKFTFPVKSSP 103

[Close]

BLAST of Chy9G157190 vs. NCBI nr
Match: XP_011656128.1 (uncharacterized protein LOC101210763 isoform X2 [Cucumis sativus] >KAE8649022.1 hypothetical protein Csa_007941 [Cucumis sativus])

HSP 1 Score: 196 bits (499), Expect = 3.53e-63
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDL+AKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKF 95
          GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKF
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVKF 95

[Close]

BLAST of Chy9G157190 vs. NCBI nr
Match: XP_008459687.1 (PREDICTED: MICOS complex subunit Mic10 [Cucumis melo])

HSP 1 Score: 191 bits (485), Expect = 4.83e-61
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 92
          GIGSAYTDCNSLF+GSTAKFTSPKITEAQPSQ
Sbjct: 61 GIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQ 92

[Close]

BLAST of Chy9G157190 vs. NCBI nr
Match: XP_004141570.1 (uncharacterized protein LOC101210763 isoform X1 [Cucumis sativus])

HSP 1 Score: 190 bits (483), Expect = 9.76e-61
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGVVPPPHDL+AKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 92
          GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 92

[Close]

BLAST of Chy9G157190 vs. NCBI nr
Match: XP_038890568.1 (uncharacterized protein LOC120080085 isoform X1 [Benincasa hispida])

HSP 1 Score: 190 bits (483), Expect = 1.11e-60
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENKGV+PPPHDLNAKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVLPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVK 94
          GIGSAYTDCNSLFEGSTAKF SPKITEAQPSQVK
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFASPKITEAQPSQVK 94

[Close]

BLAST of Chy9G157190 vs. TAIR 10
Match: AT1G72170.1 (Domain of unknown function (DUF543) )

HSP 1 Score: 131.3 bits (329), Expect = 4.4e-31
Identity = 65/95 (68.42%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAE K  VPP +D+NAKWDACLDLT+RRFVYSS  GAF GLLFFRSPVTRWASIA GAG+
Sbjct: 1  MAEKKDSVPPEYDVNAKWDACLDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASIALGAGI 60

Query: 61 GIGSAYTDCNSLFE---GSTAKFTSPK--ITEAQP 91
          GIGSAY+DC+  F+    S+A   +PK  ITE  P
Sbjct: 61 GIGSAYSDCSRAFDSPSSSSANLAAPKNNITETSP 95

[Close]

BLAST of Chy9G157190 vs. TAIR 10
Match: AT1G22520.2 (Domain of unknown function (DUF543) )

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-28
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 13 DLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLGIGSAYTDCNSL 72
          D+NAKWDACLDLT RRFVYSS  GAF GLLFFRSPVTRWASIAFGAG+GIGSAYTDC+ +
Sbjct: 12 DVNAKWDACLDLTARRFVYSSLGGAFAGLLFFRSPVTRWASIAFGAGIGIGSAYTDCSRV 71

Query: 73 FEGSTAK----FTSPKITEAQPSQV 94
          F+ S++       +PK TE   SQV
Sbjct: 72 FDASSSTSATLLAAPKSTETSVSQV 96

[Close]

BLAST of Chy9G157190 vs. TAIR 10
Match: AT1G22520.1 (Domain of unknown function (DUF543) )

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-28
Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 13 DLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLGIGSAYTDCNSL 72
          D+NAKWDACLDLT RRFVYSS  GAF GLLFFRSPVTRWASIAFGAG+GIGSAYTDC+ +
Sbjct: 12 DVNAKWDACLDLTARRFVYSSLGGAFAGLLFFRSPVTRWASIAFGAGIGIGSAYTDCSRV 71

Query: 73 FEGSTAK----FTSPKITEAQPSQ 93
          F+ S++       +PK TE   SQ
Sbjct: 72 FDASSSTSATLLAAPKSTETSVSQ 95

The following BLAST results are available for this feature:

BLAST of Chy9G157190 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G157190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKW9	2.1e-49	96.12	MICOS complex subunit Mic10 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KUY2	1.1e-45	98.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G652290 PE=3 SV=1	[more]
A0A1S3CAS1	1.9e-45	98.91	MICOS complex subunit Mic10 OS=Cucumis melo OX=3656 GN=LOC103498730 PE=3 SV=1	[more]
A0A6J1I917	3.3e-42	94.57	uncharacterized protein LOC111472604 OS=Cucurbita maxima OX=3661 GN=LOC111472604...	[more]
A0A6J1EC46	3.6e-41	92.39	uncharacterized protein LOC111432720 OS=Cucurbita moschata OX=3662 GN=LOC1114327...	[more]

BLAST of Chy9G157190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039215.1	3.91e-66	96.12	MICOS complex subunit Mic10 isoform X2 [Cucumis melo var. makuwa] >TYK00403.1 MI...	[more]
XP_011656128.1	3.53e-63	98.95	uncharacterized protein LOC101210763 isoform X2 [Cucumis sativus] >KAE8649022.1 ...	[more]
XP_008459687.1	4.83e-61	98.91	PREDICTED: MICOS complex subunit Mic10 [Cucumis melo]	[more]
XP_004141570.1	9.76e-61	98.91	uncharacterized protein LOC101210763 isoform X1 [Cucumis sativus]	[more]
XP_038890568.1	1.11e-60	96.81	uncharacterized protein LOC120080085 isoform X1 [Benincasa hispida]	[more]

BLAST of Chy9G157190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72170.1	4.4e-31	68.42	Domain of unknown function (DUF543)	[more]
AT1G22520.2	1.6e-28	70.59	Domain of unknown function (DUF543)	[more]
AT1G22520.1	4.5e-28	70.24	Domain of unknown function (DUF543)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007512	MICOS complex subunit Mic10	PFAM	PF04418	DUF543	coord: 5..73 e-value: 1.7E-25 score: 88.7
IPR007512	MICOS complex subunit Mic10	PANTHER	PTHR21304	UNCHARACTERIZED	coord: 12..82
None	No IPR available	PANTHER	PTHR21304:SF8	MICOS COMPLEX SUBUNIT MIC10-LIKE PROTEIN (DUF543)	coord: 12..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G157190.1	Chy9G157190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0061617	MICOS complex
cellular_component	GO:0005743	mitochondrial inner membrane