Chy8G156770 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G156770
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Glycine-rich protein family
Location	chrH08: 17880471 .. 17881137 (+)
RNA-Seq Expression	Chy8G156770
Synteny	Chy8G156770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCCAATTAGCTTCCTCCCCATTGTTCTCGCTCTTGCTGTCTTGCTCCACTGCCCCTCAGGTTATCTCCATGTCGTTCGGGAACTCAAACCCGATACGGTTTTCCCTTTTCTTTTCCGTTTTCTTAATCAAAAGTTTGCATGGTATCGGTTTTTTATTTGAAGAAGAAGATGGTTTTAAGTAATTCTCATGATATGATCTATTTGTGTTGTGTTTTCTGTATTGTGACAGTTTATGGTGATGATCAGGAGATTCCTGGACAAATGGTGGTTGAAGGCTTCAAATGTTTTGACAATAAGTTTGTGAGTTTTTCTTATCCCTTTTTATCTTTCTAATGATGATGAGTTTCATAATGTTTTGTTTATTATTCTTATAAGCTTTTATTGTTTGTTAGATATACAATGGTTGTGAAAGTGCTTATAGATTGAACCCAAGTGGGAGTTTCAATGTCCCTCCTGAGGCTACTAACCTATTTTGCAATGGACCATGTTTGATCGAAACACAACTTCTGCTCAACTGCCTTGACAACACTTTTCAAAACTTCTTGTTCTACAACAAAGCCACTGCACAAAGCGTTCGAAACGCCCTCCGTGTTGGCTGCAGCTACTCGAGCCAAAGAGGTAGGCCATACGTTATTGGCCAGCTACGTACTTTATGTTAA

mRNA sequence

ATGGCTTCCCCAATTAGCTTCCTCCCCATTGTTCTCGCTCTTGCTGTCTTGCTCCACTGCCCCTCAGGTTATCTCCATGTCGTTCGGGAACTCAAACCCGATACGGAGATTCCTGGACAAATGGTGGTTGAAGGCTTCAAATGTTTTGACAATAAGTTTATATACAATGGTTGTGAAAGTGCTTATAGATTGAACCCAAGTGGGAGTTTCAATGTCCCTCCTGAGGCTACTAACCTATTTTGCAATGGACCATGTTTGATCGAAACACAACTTCTGCTCAACTGCCTTGACAACACTTTTCAAAACTTCTTGTTCTACAACAAAGCCACTGCACAAAGCGTTCGAAACGCCCTCCGTGTTGGCTGCAGCTACTCGAGCCAAAGAGGTAGGCCATACGTTATTGGCCAGCTACGTACTTTATGTTAA

Coding sequence (CDS)

ATGGCTTCCCCAATTAGCTTCCTCCCCATTGTTCTCGCTCTTGCTGTCTTGCTCCACTGCCCCTCAGGTTATCTCCATGTCGTTCGGGAACTCAAACCCGATACGGAGATTCCTGGACAAATGGTGGTTGAAGGCTTCAAATGTTTTGACAATAAGTTTATATACAATGGTTGTGAAAGTGCTTATAGATTGAACCCAAGTGGGAGTTTCAATGTCCCTCCTGAGGCTACTAACCTATTTTGCAATGGACCATGTTTGATCGAAACACAACTTCTGCTCAACTGCCTTGACAACACTTTTCAAAACTTCTTGTTCTACAACAAAGCCACTGCACAAAGCGTTCGAAACGCCCTCCGTGTTGGCTGCAGCTACTCGAGCCAAAGAGGTAGGCCATACGTTATTGGCCAGCTACGTACTTTATGTTAA

Protein sequence

MASPISFLPIVLALAVLLHCPSGYLHVVRELKPDTEIPGQMVVEGFKCFDNKFIYNGCESAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRVGCSYSSQRGRPYVIGQLRTLC*

Homology

[Close]

BLAST of Chy8G156770 vs. ExPASy TrEMBL
Match: A0A0A0LYD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561940 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.5e-66
Identity = 124/129 (96.12%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MASPISFLPIVLALAVLLHCPSGYLHVVRELKPDTEIPGQMVVEGFKCFDNKFIYNGCES 60
           MASPISFLPI LALAVLL CPSG+LHV+RELKPDTEIPGQMVVEGFKCFDNKFIYNGCE 
Sbjct: 1   MASPISFLPIALALAVLLRCPSGHLHVIRELKPDTEIPGQMVVEGFKCFDNKFIYNGCER 60

Query: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120
           AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV
Sbjct: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120

Query: 121 GCSYSSQRG 130
           GCSYSSQRG
Sbjct: 121 GCSYSSQRG 129

[Close]

BLAST of Chy8G156770 vs. ExPASy TrEMBL
Match: A0A5A7U972 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004450 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.2e-60
Identity = 116/140 (82.86%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 1   MASPISFLPIVLALAVLLHCPSGYLHVVRELKPDTEIPGQMVVEGFKCFDNKFIYNGCES 60
           MASPISFLP+VLAL V L CPS        +  D EI GQMVVE FKCFDNKFIYNGCES
Sbjct: 1   MASPISFLPVVLALVVSLRCPS--------VNGDQEISGQMVVESFKCFDNKFIYNGCES 60

Query: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120
           AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDN+F NFLFYNKATAQSVRNALR+
Sbjct: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRI 120

Query: 121 GCSYSSQRGRPYVIGQLRTL 141
           GCS+SSQRGRPYV+GQL TL
Sbjct: 121 GCSFSSQRGRPYVVGQLHTL 132

[Close]

BLAST of Chy8G156770 vs. ExPASy TrEMBL
Match: A0A1S3BPH6 (uncharacterized protein LOC103492117 OS=Cucumis melo OX=3656 GN=LOC103492117 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.7e-54
Identity = 107/129 (82.95%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MASPISFLPIVLALAVLLHCPSGYLHVVRELKPDTEIPGQMVVEGFKCFDNKFIYNGCES 60
           MASPISFLP+VLAL V L CPS        +  D EI GQMVVE FKCFDNKFIYNGCES
Sbjct: 1   MASPISFLPVVLALVVSLRCPS--------VNGDQEISGQMVVESFKCFDNKFIYNGCES 60

Query: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120
           AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDN+F NFLFYNKATAQSVRNALR+
Sbjct: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRI 120

Query: 121 GCSYSSQRG 130
           GCS+SSQRG
Sbjct: 121 GCSFSSQRG 121

[Close]

BLAST of Chy8G156770 vs. ExPASy TrEMBL
Match: A0A6J1E0J9 (uncharacterized protein LOC111025289 OS=Momordica charantia OX=3673 GN=LOC111025289 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 6.9e-43
Identity = 93/129 (72.09%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MASPISFLPIVLALAVLLHCPSGYLHVVRELKPDTEIPGQMVVEGFKCFDNKFIYNGCES 60
           MA P +FLPI+LALAV L  PS    V  E     EIPGQ+V E  +CFDNKFIYNGC+S
Sbjct: 1   MAFP-TFLPILLALAVSLPTPS----VCAE-----EIPGQVVTEALRCFDNKFIYNGCDS 60

Query: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120
            YRLNPSGSFNVPPEATNLFC+GPCL+ET+L+L+CLD+ F NFLFYNKA AQ+VRNALR 
Sbjct: 61  GYRLNPSGSFNVPPEATNLFCSGPCLVETRLVLDCLDDAFGNFLFYNKAMAQNVRNALRA 119

Query: 121 GCSYSSQRG 130
           GCSYSSQRG
Sbjct: 121 GCSYSSQRG 119

[Close]

BLAST of Chy8G156770 vs. ExPASy TrEMBL
Match: A0A6J1JMH7 (uncharacterized protein LOC111486529 OS=Cucurbita maxima OX=3661 GN=LOC111486529 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.9e-38
Identity = 84/129 (65.12%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MASPISFLPIVLALAVLLHCPSGYLHVVRELKPDTEIPGQMVVEGFKCFDNKFIYNGCES 60
           MASP+  L ++   A+ L+C S    V  E     E  GQ V +GF+CFDN  IYNGCES
Sbjct: 1   MASPLPVLLLLPLAALALYCSS----VCGE-----EFEGQGVTQGFQCFDNNLIYNGCES 60

Query: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120
           AYRLNPSG+ NVP +ATNLFCNGPCLIETQLLLNCLD+ F NFLFYNKAT  +V+NALR 
Sbjct: 61  AYRLNPSGNLNVPLQATNLFCNGPCLIETQLLLNCLDHAFDNFLFYNKATVLAVQNALRA 120

Query: 121 GCSYSSQRG 130
           GCSYS+QRG
Sbjct: 121 GCSYSTQRG 120

[Close]

BLAST of Chy8G156770 vs. NCBI nr
Match: KAA0050947.1 (uncharacterized protein E6C27_scaffold761G00740 [Cucumis melo var. makuwa] >TYK10294.1 uncharacterized protein E5676_scaffold16G004450 [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (608), Expect = 1.50e-78
Identity = 116/140 (82.86%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 1   MASPISFLPIVLALAVLLHCPSGYLHVVRELKPDTEIPGQMVVEGFKCFDNKFIYNGCES 60
           MASPISFLP+VLAL V L CPS        +  D EI GQMVVE FKCFDNKFIYNGCES
Sbjct: 1   MASPISFLPVVLALVVSLRCPS--------VNGDQEISGQMVVESFKCFDNKFIYNGCES 60

Query: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120
           AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDN+F NFLFYNKATAQSVRNALR+
Sbjct: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRI 120

Query: 121 GCSYSSQRGRPYVIGQLRTL 140
           GCS+SSQRGRPYV+GQL TL
Sbjct: 121 GCSFSSQRGRPYVVGQLHTL 132

[Close]

BLAST of Chy8G156770 vs. NCBI nr
Match: XP_031736077.1 (uncharacterized protein LOC101204762 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 9.50e-76
Identity = 115/129 (89.15%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 1   MASPISFLPIVLALAVLLHCPSGYLHVVRELKPDTEIPGQMVVEGFKCFDNKFIYNGCES 60
           MASPISFLPI LALAVLL CPS Y         D EIPGQMVVEGFKCFDNKFIYNGCE 
Sbjct: 1   MASPISFLPIALALAVLLRCPSVY-------SDDQEIPGQMVVEGFKCFDNKFIYNGCER 60

Query: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120
           AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV
Sbjct: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120

Query: 121 GCSYSSQRG 129
           GCSYSSQRG
Sbjct: 121 GCSYSSQRG 122

[Close]

BLAST of Chy8G156770 vs. NCBI nr
Match: XP_008450550.1 (PREDICTED: uncharacterized protein LOC103492117 [Cucumis melo])

HSP 1 Score: 218 bits (556), Expect = 2.71e-70
Identity = 107/129 (82.95%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MASPISFLPIVLALAVLLHCPSGYLHVVRELKPDTEIPGQMVVEGFKCFDNKFIYNGCES 60
           MASPISFLP+VLAL V L CPS        +  D EI GQMVVE FKCFDNKFIYNGCES
Sbjct: 1   MASPISFLPVVLALVVSLRCPS--------VNGDQEISGQMVVESFKCFDNKFIYNGCES 60

Query: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120
           AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDN+F NFLFYNKATAQSVRNALR+
Sbjct: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRI 120

Query: 121 GCSYSSQRG 129
           GCS+SSQRG
Sbjct: 121 GCSFSSQRG 121

[Close]

BLAST of Chy8G156770 vs. NCBI nr
Match: KAE8653344.1 (hypothetical protein Csa_007318 [Cucumis sativus])

HSP 1 Score: 191 bits (484), Expect = 9.10e-60
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 41  MVVEGFKCFDNKFIYNGCESAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTF 100
           MVVEGFKCFDNKFIYNGCE AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTF
Sbjct: 1   MVVEGFKCFDNKFIYNGCERAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTF 60

Query: 101 QNFLFYNKATAQSVRNALRVGCSYSSQRG 129
           QNFLFYNKATAQSVRNALRVGCSYSSQRG
Sbjct: 61  QNFLFYNKATAQSVRNALRVGCSYSSQRG 89

[Close]

BLAST of Chy8G156770 vs. NCBI nr
Match: XP_022158829.1 (uncharacterized protein LOC111025289 [Momordica charantia])

HSP 1 Score: 182 bits (462), Expect = 4.84e-56
Identity = 93/129 (72.09%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MASPISFLPIVLALAVLLHCPSGYLHVVRELKPDTEIPGQMVVEGFKCFDNKFIYNGCES 60
           MA P +FLPI+LALAV L  PS    V  E     EIPGQ+V E  +CFDNKFIYNGC+S
Sbjct: 1   MAFP-TFLPILLALAVSLPTPS----VCAE-----EIPGQVVTEALRCFDNKFIYNGCDS 60

Query: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120
            YRLNPSGSFNVPPEATNLFC+GPCL+ET+L+L+CLD+ F NFLFYNKA AQ+VRNALR 
Sbjct: 61  GYRLNPSGSFNVPPEATNLFCSGPCLVETRLVLDCLDDAFGNFLFYNKAMAQNVRNALRA 119

Query: 121 GCSYSSQRG 129
           GCSYSSQRG
Sbjct: 121 GCSYSSQRG 119

[Close]

BLAST of Chy8G156770 vs. TAIR 10
Match: AT1G56320.1 (BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT5G49350.2); Has 60 Blast hits to 60 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 111.7 bits (278), Expect = 4.9e-25
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 39  GQMVVEGFKCFDNKFIYNGCESAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDN 98
           G +V     CF+N  +Y GC  A+RLN  G F VPPE T+ FCNGPC  ET+L+L C+++
Sbjct: 37  GILVQRAAFCFNNNLLYRGCNEAFRLNQQGEFKVPPEETDRFCNGPCSAETELVLTCINS 96

Query: 99  TFQNFLFYNKATAQSVRNALRVGCSYSSQRG 130
              +F+FYN+AT + VRNALR GCS S  RG
Sbjct: 97  VMSDFVFYNRATPRDVRNALRGGCSSSFTRG 127

[Close]

BLAST of Chy8G156770 vs. TAIR 10
Match: AT5G49350.1 (Glycine-rich protein family )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 36  EIPGQMVVEGFKCFDNKFIYNGCESAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNC 95
           E P ++V +  +C + K IY  C+ ++RL  +G  N+P   T  FC GPC  ET L LNC
Sbjct: 175 EDPPEIVAKALECLNEKHIYRECDESWRLTLNGDLNIPLGRTEEFCEGPCFSETHLALNC 234

Query: 96  LDNTFQNFLFYNKATAQSVRNALRVGCSYSSQRG 130
           ++    ++ F+N+AT   +R  L+ GCSY  +RG
Sbjct: 235 IEEIIHHYRFFNRATIHDIRETLKSGCSYGPERG 268

[Close]

BLAST of Chy8G156770 vs. TAIR 10
Match: AT5G49350.2 (Glycine-rich protein family )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 36  EIPGQMVVEGFKCFDNKFIYNGCESAYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNC 95
           E P ++V +  +C + K IY  C+ ++RL  +G  N+P   T  FC GPC  ET L LNC
Sbjct: 98  EDPPEIVAKALECLNEKHIYRECDESWRLTLNGDLNIPLGRTEEFCEGPCFSETHLALNC 157

Query: 96  LDNTFQNFLFYNKATAQSVRNALRVGCSYSSQRG 130
           ++    ++ F+N+AT   +R  L+ GCSY  +RG
Sbjct: 158 IEEIIHHYRFFNRATIHDIRETLKSGCSYGPERG 191

The following BLAST results are available for this feature:

BLAST of Chy8G156770 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G156770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYD5	1.5e-66	96.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561940 PE=4 SV=1	[more]
A0A5A7U972	6.2e-60	82.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BPH6	8.7e-54	82.95	uncharacterized protein LOC103492117 OS=Cucumis melo OX=3656 GN=LOC103492117 PE=...	[more]
A0A6J1E0J9	6.9e-43	72.09	uncharacterized protein LOC111025289 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1JMH7	3.9e-38	65.12	uncharacterized protein LOC111486529 OS=Cucurbita maxima OX=3661 GN=LOC111486529...	[more]

BLAST of Chy8G156770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050947.1	1.50e-78	82.86	uncharacterized protein E6C27_scaffold761G00740 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_031736077.1	9.50e-76	89.15	uncharacterized protein LOC101204762 [Cucumis sativus]	[more]
XP_008450550.1	2.71e-70	82.95	PREDICTED: uncharacterized protein LOC103492117 [Cucumis melo]	[more]
KAE8653344.1	9.10e-60	98.88	hypothetical protein Csa_007318 [Cucumis sativus]	[more]
XP_022158829.1	4.84e-56	72.09	uncharacterized protein LOC111025289 [Momordica charantia]	[more]

BLAST of Chy8G156770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56320.1	4.9e-25	52.75	BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT...	[more]
AT5G49350.1	1.4e-19	39.36	Glycine-rich protein family	[more]
AT5G49350.2	1.4e-19	39.36	Glycine-rich protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34366:SF8	BNAANNG20590D PROTEIN	coord: 8..130
None	No IPR available	PANTHER	PTHR34366	OS07G0289901 PROTEIN-RELATED	coord: 8..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G156770.1	Chy8G156770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane