Chy8G156330 (gene) Cucumber (hystrix) v1

Overview
NameChy8G156330
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionER membrane protein complex subunit 6
LocationchrH08: 17439288 .. 17443695 (-)
RNA-Seq ExpressionChy8G156330
SyntenyChy8G156330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGATACTCCTCCACTGCTTCTGACAAGAAATCGTCTGATTTGGCCGACGATATACCGATCTTCAATGCTGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGGTTTTTTCGATGCTTCAATCAACTTTACTTTCTTGTTGATACCGATTGTCTTTTATTCGAATCCTATCAATTTTCTTAGAATTGGAATCCTTCCGTGATAGACCTAGACCCTGTCTTTTCTATTTCTATCTTCTTAATTAGCAGCTTATGTGACTGTGGATTTAATTGGTCGACCTAAAATTTTACTGGGTTCTGAGCAATCTGGGGATTGTTTCCATTCAAACTGAGTAGCTACTTAATAATGGACTCGATGGGATTTTTATTGATTATTATGATTTTGTTCTTGAGTTTTGTGAATTTAGATTATGAACGTCTACTATCTTATGCAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCAGTTGCACTTGCAGCTAAGGCTGGATTTTCCTTTCATTCATATTTTGAAAGCTGTAACCAGATTCTACTCGATGGCTTTCTGAGTGGACTTATGGTATGCGTCCTCTGCCCTTATTTTTTAGATTGGACAAAGTTGCAAGACACAATAGAGCACATGAAATAGGATAATTGAATAATTTTATGTACTTGAATGAAGCTGGCTTCTTTTGATTTTCTATTTTATTTATAAGTGATATGAATTTTTAGATCTAATGCTTCTAGGGTTTCTAAGTTGCGAATCTTTCTTGTTAATTGCATACATTTGTTCTGTCTTTAGAAGAAATTAGTTACCATAGGAGAAGACAAGTCACAGTACTATCTTCAATGTTATTGTTCTGGAGGCTAATCGAGAAAAAGACAGTAAAATTCCATTTCTTTTAGAAGGTAGTATGACGCATGAAGAGGAAGGCCCAATTCTAAGTTGAATGTTCTTTTAAACCCCCATGGGATCCCTTTTAGGGTGATTTCTTATCCTCCTGGCTAGGCTTTCATACATTGTTGATATTTGGACAATTTTCACATTCCCTATTAAGGAAAATATAGGCTAATGCAATTTGAATGAGGTTTTACTGGGCATAAGAATTAATGAAGATTTTGAAGAAAAATTGTAGTTGAAGGTTATTTGAAAACCTTGTCTAAATAAGATATCTTGGACCCTTGGGGATCAGAAAATCCATTTCTAAATGGATAAGAAAATGGGATAACAATTTGAGTTTGTTTGATCATACTAATAAGGAAAGGAAATAAAATAAGGTAAGGAAATAAAAAAAGATGAGCAAGTTGATTTTAGGAAATGTTGAGGGTTTTCTTTTTTTCTTCCTCTCTCACTTGCAACAGGATAGAGGTCTCTAGAGCCTTGGGGTTGGATTGGTTCCAATTCCTACAGAAACTTGGATAGACTGAAAAACTGGGTTAGATAAATTCCAGTTTTCTTACGACCCTATGTGGTTTTTTTCAAGATTAAGAAAAATCAAAGAAAGGTAGGAGAATTGAAGAAGAAAAAGAGTCAAAGTAGAAACAAAATCATTTTTATTTCTATATCTTGCTTCAAATATTTTTTCCCTCAAGATTATTTGAGTTAATTTCATTCTAACCTTGTGTATTTTTCATTTATATCATTTTCATTTATTATTTTATTAACTGTGCTTCGCTTCAATCAGGCAACGCCTATTGTTGCCTCTTGCCTTGAGGCCATTAAAAAGTTTGTGGCCTCAGAGTGCTCCTTGGACTTTGAAAACACTGAATGGGGTGTATTAGTGCTAGTCATATTTGCTTAACGCGTAGCAAGTTTGGGGCTATGTACTTCCAGCATTCAGAGTGTAAACCCATATGTAGTTTCAACACTAGCCTAGTCATTGGAAATATTTGTAGGGTGCTAGTTAAGAGAGGTGAAGGTCTACCATTTTTGAAGGTCCAATGTCATTCCTTCCAAGAAAAATTAAATGAGATTCTGCGAAGGTCTAGCTGTAGGGTTTTTCTTCTGTATGGAGAAATTGGATTAGTCTTTAGTGGGCAATTTTCATCCTTCATTTTTTTCCCCATGTTTGTGTGTGAACATGGAGGTAATATTTAGGCTTCAAGGGATCTGAGAGCTCAGAGTTTCGAAGGGAATTGGAGACTTTGGGGCAAGGGTGCCTTCAAAAGGCTAATTTCTTTGTCTTATTATGAGAGACCAAGAGTTAAGATTAGAGCAACTAGAGACTTCTTAGGCTGAGTGTCCCTCTTTTTATGGATGTTGTTTTAAGTCTATTTCTCTACATGGATATTGATTGCAATCAAATTGAAGATTTTTAGTATAGGTGGGGGTGATAAAATCTTCACTTGAGTAGTTTTCAATTTTCTGCTGCTGTTGATAAGAGTTTCTTCTTCTACTTGGAAGAAAAATGCAAAAGGGGTAACCTGTTCAATATTGTCAAAGCTTTTGAGGTTATGTCAGCCCCTAGGCCGTAAGATCAGCTATAAAAAGGTAGTGTTTGGTCGATTGGAGTCCTTTGTTAGGTTTGTTTGGCTCTTTTTGAAGCCTGGATTTTTTACTGGAAAAACGAGGGTTGACCCTTGTTATCTCAAGTTTAAAACGTTAGATAAGGTTTTAAGAAAAATTTCGTCTTTGGTGAGACCTTTCTGTTGCATCTTGTGTTGGAGGCCAGAGGAAGGCATAACCTTGAGGCAGGCTTTCACAAACCTTTTAGTGCTTTGATCGAGGAATTCCTCTTCTATCCGCTGTTTTGGGTAAGGGAGTTTATATATATGTGTGTGTGTATATATATGGGAAGCAGGGATGTGTGTTTTGTTTTTGGGAGGTGGGATGGAGTCTTTTTATGGGGATTTTTTTTATTGCTTTGAATTTTTTATATTTTTTTCTCAATTAAAGTTGGTATATTGTCTAAAATGCTACAAATGTAGTCATATTCTAAGTTGGTGTAAACGTTTGCTTGCTTAAAGATTTTAGAGGATTTGGAATTTCTGCTGGAATTTAAAAGTGCAAGCATTTTTCTTATGGTATAAGAAGTAAATGAGGTATGGATTGCTCTGGATAGTATTTGAAAGAACTTATAAGATGCAGCATGGAAATCAATTGTGTATTTCAAATCCTTGGTGGAAGCGTTAGACAACTCAAAACAAAGGAATGAGAGAAAGAATGAAATTTGGGAGGATTTTCTTATTAATTTAGTGGTCAGACCTGATAACAGGGAAGACGGTGATCATCATGGGTTGTCCTAGTGGTAAAAAGGAGTCATAGTCTCAATAACTAACTAAGAGGACATGGATTCAATCCATGGTGGTCACCTTACCTAGGAATTAATTTTCCATTAGTTACCTTGACACCCAAATGTCATAGGGTCAGGTGGGTTGTCCCGTGATATTATTCGAGGTGCGTGTAAGCTGGTCTGAACACTCACAGATATTAAAAAATTATAGAAAAGATGTTAGGTTTTGGAGTTTCAATTTCAAGATTCTTACTATCTCCTTTTGTTTCAAGCATATTAATATATTATTGATGTTTCTCAGGTGCTTCCAACCAAATTGCCTAGTTTTTCAGTGAATATTTCTAAAATTTGATTTTTTTTTTTCTTTTCAAAATGTTATCCTCGTAACATCAATAAGAGTACAAAAGATAATTTTGAACTTAAGTATCACACCCTTTGAGGGATCAATTATCTATTTATGGTCCCTCCTACTTTGGGGTCTGTGCCTTCATCTTTTGGTGGGACTTCTTGAGTTTCAGAAAGCCCAGATTGATCTCTATAATTTTTTCCTAGGGTCTTGGGGGACTTAAATTTCTTTATGACATTAGAAAATAATTGTTTCTCAGCATCCAATAGATACAATGATTGGAAGATTATCTTACACTATATATTACTTGTCTTGTCAATGACTTCTTATTTTTATGTGTTTGTTATCCAACAACCTATGGACACTAACCCTTTGTTTTAATTTTGCAGTCGTTCGTGCTTTTCTGGACGTATCCTTTACATAACTTTATGGTTTATACAAAGTATTTTTTGCCTTTTACTTCAAATACATTAAAAAATTTCCAACATTAAACTATCGGAACATTCTGAAGATATTTCTTTTCTTTCTTTCTTTAAGAGGTAGTTCTCATTTACGTAGCCAAAGAGTATATAGCTCAATGAAGTATATTGCTTCCCTTGCGTATTTCTATTTTAATTTGTATATTGACTGTGTTTTTCTTGACACAAAAAAGTTTCGCGTACGATATCGTCCATATATTCTGAGTCCAAATGCTGGCAGGAATTGGAAATTCTAGAGGTAGCTGCAGCTCTGTACAATTCGACTCGAGACCGGGGCGTTCCAAAGGAGTAA

mRNA sequence

ATGGCGGGATACTCCTCCACTGCTTCTGACAAGAAATCGTCTGATTTGGCCGACGATATACCGATCTTCAATGCTGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCAGTTGCACTTGCAGCTAAGGCTGGATTTTCCTTTCATTCATATTTTGAAAGCTGTAACCAGATTCTACTCGATGGCTTTCTGAGTGGACTTATGGAATTGGAAATTCTAGAGGTAGCTGCAGCTCTGTACAATTCGACTCGAGACCGGGGCGTTCCAAAGGAGTAA

Coding sequence (CDS)

ATGGCGGGATACTCCTCCACTGCTTCTGACAAGAAATCGTCTGATTTGGCCGACGATATACCGATCTTCAATGCTGAAAATTTGCAAAACAACTTGAAGATAATATATTACAGCCGGACGTTTTTGTCTATAATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTGGCCTGACTGGATTTATATTTTATTTCCTAGTCATGGCAATTACTTCAGTTGCACTTGCAGCTAAGGCTGGATTTTCCTTTCATTCATATTTTGAAAGCTGTAACCAGATTCTACTCGATGGCTTTCTGAGTGGACTTATGGAATTGGAAATTCTAGAGGTAGCTGCAGCTCTGTACAATTCGACTCGAGACCGGGGCGTTCCAAAGGAGTAA

Protein sequence

MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLMELEILEVAAALYNSTRDRGVPKE*
Homology
[Close]
BLAST of Chy8G156330 vs. ExPASy Swiss-Prot
Match: Q9BV81 (ER membrane protein complex subunit 6 OS=Homo sapiens OX=9606 GN=EMC6 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-08
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSVALAAKAG 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + S+ L  KAG
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSFHSYFESCNQILLDGFLSGL 103
             ++ YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]
BLAST of Chy8G156330 vs. ExPASy Swiss-Prot
Match: Q9CQW0 (ER membrane protein complex subunit 6 OS=Mus musculus OX=10090 GN=Emc6 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-08
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSVALAAKAG 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + S+ L  KAG
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSFHSYFESCNQILLDGFLSGL 103
             ++ YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]
BLAST of Chy8G156330 vs. ExPASy Swiss-Prot
Match: Q6GLC5 (ER membrane protein complex subunit 6 OS=Xenopus tropicalis OX=8364 GN=emc6 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-07
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSVALAAKAGFSFHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + S+ L  K+G  ++ YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESCNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLIGGL 93

[Close]
BLAST of Chy8G156330 vs. ExPASy Swiss-Prot
Match: Q68EU8 (ER membrane protein complex subunit 6 OS=Xenopus laevis OX=8355 GN=emc6 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-07
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSVALAAKAGFSFHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T L GFIFYFL   + S+ L  K+G  ++ YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESCNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLVGGL 93

[Close]
BLAST of Chy8G156330 vs. ExPASy Swiss-Prot
Match: Q3ZCG8 (ER membrane protein complex subunit 6 OS=Bos taurus OX=9913 GN=EMC6 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-07
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 0 

Query: 21  PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLVMAITSVALAAKAG 80
           P  +   ++ N  ++ Y RT +S + G  AGILG TGL GFIFY L   + S+ L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAR 71

Query: 81  FSFHSYFESCNQILLDGFLSGL 103
             ++ YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]
BLAST of Chy8G156330 vs. ExPASy TrEMBL
Match: A0A0A0LZ06 (ER membrane protein complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_1G569390 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.7e-46
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 104
           FIFYFLVMAITSVALAAKAGFSFHSYFESCNQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

[Close]
BLAST of Chy8G156330 vs. ExPASy TrEMBL
Match: A0A1S3BQB0 (ER membrane protein complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492162 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSSTASDKKSSD ADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDSADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 104
           FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFL GLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLGGLM 103

[Close]
BLAST of Chy8G156330 vs. ExPASy TrEMBL
Match: A0A6J1CBS9 (ER membrane protein complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111009251 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 93/103 (90.29%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKS++ ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 104
           FI YFLVMAITS+ LAAKAGFSFHSYFES NQILLDGFLSGLM
Sbjct: 61  FILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of Chy8G156330 vs. ExPASy TrEMBL
Match: A0A6J1FFH8 (ER membrane protein complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111443473 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD  DDIPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 1   MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60

Query: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQILLDGFLSGLM
Sbjct: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of Chy8G156330 vs. ExPASy TrEMBL
Match: A0A6J1I7D9 (ER membrane protein complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111470685 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.6e-41
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD  DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 1   MAGYSSNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60

Query: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQILLDGFLSGLM
Sbjct: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of Chy8G156330 vs. NCBI nr
Match: XP_004135605.1 (ER membrane protein complex subunit 6 [Cucumis sativus] >KGN66513.2 hypothetical protein Csa_007044 [Cucumis sativus])

HSP 1 Score: 192 bits (489), Expect = 6.28e-61
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 103
           FIFYFLVMAITSVALAAKAGFSFHSYFESCNQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

[Close]
BLAST of Chy8G156330 vs. NCBI nr
Match: XP_008450632.1 (PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo])

HSP 1 Score: 191 bits (484), Expect = 3.63e-60
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSSTASDKKSSD ADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSTASDKKSSDSADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 103
           FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFL GLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLGGLM 103

[Close]
BLAST of Chy8G156330 vs. NCBI nr
Match: XP_022137968.1 (ER membrane protein complex subunit 6 [Momordica charantia] >XP_022137969.1 ER membrane protein complex subunit 6 [Momordica charantia])

HSP 1 Score: 177 bits (448), Expect = 1.11e-54
Identity = 93/103 (90.29%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKS++ ADD+PIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG
Sbjct: 1   MAGYSSAASEKKSTEAADDVPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 103
           FI YFLVMAITS+ LAAKAGFSFHSYFES NQILLDGFLSGLM
Sbjct: 61  FILYFLVMAITSLGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of Chy8G156330 vs. NCBI nr
Match: XP_022937062.1 (ER membrane protein complex subunit 6 [Cucurbita moschata] >XP_022937070.1 ER membrane protein complex subunit 6 [Cucurbita moschata])

HSP 1 Score: 177 bits (448), Expect = 1.11e-54
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD  DDIPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 1   MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60

Query: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 103
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQILLDGFLSGLM
Sbjct: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of Chy8G156330 vs. NCBI nr
Match: XP_022972030.1 (ER membrane protein complex subunit 6 [Cucurbita maxima] >XP_022972031.1 ER membrane protein complex subunit 6 [Cucurbita maxima] >XP_023539991.1 ER membrane protein complex subunit 6 [Cucurbita pepo subsp. pepo] >XP_023539992.1 ER membrane protein complex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176 bits (446), Expect = 2.24e-54
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60
           MAGYSS AS+KKSSD  DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 1   MAGYSSNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60

Query: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 103
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQILLDGFLSGLM
Sbjct: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 103

[Close]
BLAST of Chy8G156330 vs. TAIR 10
Match: AT5G49540.1 (Rab5-interacting family protein )

HSP 1 Score: 127.5 bits (319), Expect = 7.7e-30
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 0 

Query: 8   ASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTGFIFYFLV 67
           +S+K+S D+  DIP F+AENLQNNLK+I  SRTFLSII GV+AGI+GF GL GF+FYF+V
Sbjct: 3   SSEKRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVV 62

Query: 68  MAITSVALAAKAGFSFHSYFESCNQILLDGFLSGLM 104
           M ITSV L AKAGFS   YF+S N++L DGFL GLM
Sbjct: 63  MLITSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLM 98

The following BLAST results are available for this feature:
BLAST of Chy8G156330 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9BV812.8e-0839.02ER membrane protein complex subunit 6 OS=Homo sapiens OX=9606 GN=EMC6 PE=1 SV=1[more]
Q9CQW02.8e-0839.02ER membrane protein complex subunit 6 OS=Mus musculus OX=10090 GN=Emc6 PE=1 SV=1[more]
Q6GLC51.8e-0740.00ER membrane protein complex subunit 6 OS=Xenopus tropicalis OX=8364 GN=emc6 PE=3... [more]
Q68EU82.4e-0740.00ER membrane protein complex subunit 6 OS=Xenopus laevis OX=8355 GN=emc6 PE=3 SV=... [more]
Q3ZCG83.1e-0737.80ER membrane protein complex subunit 6 OS=Bos taurus OX=9913 GN=EMC6 PE=3 SV=1[more]
BLAST of Chy8G156330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZ062.7e-4698.06ER membrane protein complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_1G569390... [more]
A0A1S3BQB01.0e-4598.06ER membrane protein complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492162 PE... [more]
A0A6J1CBS91.5e-4190.29ER membrane protein complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A6J1FFH81.5e-4191.26ER membrane protein complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111443... [more]
A0A6J1I7D92.6e-4190.29ER membrane protein complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC11147068... [more]
BLAST of Chy8G156330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135605.16.28e-6198.06ER membrane protein complex subunit 6 [Cucumis sativus] >KGN66513.2 hypothetical... [more]
XP_008450632.13.63e-6098.06PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo][more]
XP_022137968.11.11e-5490.29ER membrane protein complex subunit 6 [Momordica charantia] >XP_022137969.1 ER m... [more]
XP_022937062.11.11e-5491.26ER membrane protein complex subunit 6 [Cucurbita moschata] >XP_022937070.1 ER me... [more]
XP_022972030.12.24e-5490.29ER membrane protein complex subunit 6 [Cucurbita maxima] >XP_022972031.1 ER memb... [more]
BLAST of Chy8G156330 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G49540.17.7e-3067.71Rab5-interacting family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029008Rab5-interacting protein familyPFAMPF07019Rab5ipcoord: 35..103
e-value: 5.2E-13
score: 49.3
IPR008504ER membrane protein complex subunit 6PANTHERPTHR20994UNCHARACTERIZEDcoord: 8..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G156330.1Chy8G156330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000045 autophagosome assembly
cellular_component GO:0072546 EMC complex
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane