Chy8G155080 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G155080
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	60S ribosomal protein L24
Location	chrH08: 16424646 .. 16426042 (+)
RNA-Seq Expression	Chy8G155080
Synteny	Chy8G155080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTGAAGTTAGTCTTTATGGCAGCCCTTTCTGATTCATAGCTGTATCGATTTCATCTAGTTTTCTGCATTCCTTTTAAGTTTCTTTCGTAATCGATGATTGCATCCATTATGGCGAAATAGAGGTGGATCAATGATACTATCTTTGAAACATATGTCTTTTCTTAGGTGAATTTGATATGTAGGTCAGTAGGCTCGTTACGATTGTTGGTTTTGAAGTAGTGGCTTATACGTTGAGAATGTGATGACTTGTGGTGTTAGATATGCGTATTTTGTTATTGATTAATTTTGAAATGTAATATGCTTTGGTAGGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGCAAAGGAATCAGATTTGTCCGTGCTGATTCACAGGTAATTAACCTGCCCAGCCACTGATTGAGTTGGAGTTGTAACTGGATAATTTTATTTATTTCTTTTCTATTGGTATGATTTTACCTGCTATTTAAATTGTAATCTTATTTGGATTCACTAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCCTCTAAGCTCACCTGGACGGCAATGTACAGGAAGCAACATAAGAAGGTAAAAAAGAAATTTTAGTTCTGGGAATTTTATTTTTTATGTGTATACTTATAATATTCTGTCATATCGTGTTCTGTTTGTAACAGAGTGATTTGTACATTTAGATCATCATTTCTATCATATCGTATTCTGTTTGATAGCTTTGATCTTGGATGGATAATTTTAAAACAAAACGATGGGTCTGTGTTACTTATAGATCATGATTTTTATCAAAATAGAGGTTTTCTGTTTTGTGGAAACACACATGTCTAATTATTTACTGTCTTGTTCCTTGTTAATCATGATTTTTACTGGATAATTGGGAAATATTTAACGTTTCTTTTCTTTTTATTCGTGTAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGGTCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGGTATGTGATTGTTCTAAGTTTGAAATATCATCTAATCTTTAGAAAGGCCAAATGTTGACATTTGTATTGTATGTTTCTAACAACCACTGAATAATATATTTATTGATCACATATCTTGTGTTTTTTCTTGGGCTGCAGTGAAATTAAGGAGAGAATTAAGAAAACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGA

mRNA sequence

ATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGCAAAGGAATCAGATTTGTCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCCTCTAAGCTCACCTGGACGGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGGTCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAAACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGA

Coding sequence (CDS)

ATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGCAAAGGAATCAGATTTGTCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAGACTGAAGCCCTCTAAGCTCACCTGGACGGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGGTCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAAACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGA

Protein sequence

MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR*

Homology

[Close]

BLAST of Chy8G155080 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.6e-75
Identity = 148/163 (90.80%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGK 164
           KTKDEKKAKKAEV +K QK+QGKGNV +GA PKGPK+GGGGGK
Sbjct: 121 KTKDEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of Chy8G155080 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.3e-71
Identity = 145/160 (90.62%), Postives = 154/160 (96.25%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAA-PKGPKLGG 160
           KTKDEKKAKKAEV  K+QK+QGKG++ +G A PKGPKLGG
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of Chy8G155080 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 263.5 bits (672), Expect = 1.6e-69
Identity = 139/164 (84.76%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+Q KGN+ + AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Chy8G155080 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.0e-67
Identity = 144/165 (87.27%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDI  EA KKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQ-GKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV  K+QK+Q GKG V +G+  KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

[Close]

BLAST of Chy8G155080 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 253.1 bits (645), Expect = 2.2e-66
Identity = 139/165 (84.24%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGR-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N  +  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Chy8G155080 vs. ExPASy TrEMBL
Match: A0A5D3C883 (60S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00880 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.2e-80
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Chy8G155080 vs. ExPASy TrEMBL
Match: A0A1S3CH43 (60S ribosomal protein L24 OS=Cucumis melo OX=3656 GN=LOC103500860 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.2e-80
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Chy8G155080 vs. ExPASy TrEMBL
Match: A0A0A0KHD4 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G449310 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Chy8G155080 vs. ExPASy TrEMBL
Match: A0A6J1CRP7 (60S ribosomal protein L24-like OS=Momordica charantia OX=3673 GN=LOC111013702 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 159/164 (96.95%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRA KKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQ K NV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQNKSNVTRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Chy8G155080 vs. ExPASy TrEMBL
Match: A0A2I4FX24 (60S ribosomal protein L24 OS=Juglans regia OX=51240 GN=LOC109002760 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRGEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AK+QKTQGKGN+ +GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKSQKTQGKGNIPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Chy8G155080 vs. NCBI nr
Match: XP_008462521.1 (PREDICTED: 60S ribosomal protein L24 [Cucumis melo] >XP_038881281.1 60S ribosomal protein L24 [Benincasa hispida] >KAA0025300.1 60S ribosomal protein L24 [Cucumis melo var. makuwa] >TYK07368.1 60S ribosomal protein L24 [Cucumis melo var. makuwa])

HSP 1 Score: 304 bits (778), Expect = 1.15e-103
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Chy8G155080 vs. NCBI nr
Match: XP_004143295.1 (60S ribosomal protein L24 [Cucumis sativus] >KGN48224.1 hypothetical protein Csa_003063 [Cucumis sativus])

HSP 1 Score: 303 bits (775), Expect = 3.31e-103
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Chy8G155080 vs. NCBI nr
Match: XP_022143901.1 (60S ribosomal protein L24-like [Momordica charantia])

HSP 1 Score: 293 bits (750), Expect = 2.14e-99
Identity = 159/164 (96.95%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRA KKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164
           KTKDEKKAKKAEVMAKTQKTQ K NV RGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQNKSNVTRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Chy8G155080 vs. NCBI nr
Match: XP_018836192.1 (60S ribosomal protein L24 [Juglans regia] >XP_042944316.1 60S ribosomal protein L24 [Carya illinoinensis] >KAF5473629.1 hypothetical protein F2P56_010229 [Juglans regia] >KAG2682855.1 hypothetical protein I3760_10G003600 [Carya illinoinensis] >KAG6637989.1 hypothetical protein CIPAW_10G003400 [Carya illinoinensis] >KAG6690224.1 hypothetical protein I3842_10G003700 [Carya illinoinensis])

HSP 1 Score: 293 bits (749), Expect = 3.04e-99
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRGEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164
           KTKDEKKAKKAEV AK+QKTQGKGN+ +GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKSQKTQGKGNIPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Chy8G155080 vs. NCBI nr
Match: XP_028788866.1 (60S ribosomal protein L24 isoform X1 [Prosopis alba])

HSP 1 Score: 292 bits (747), Expect = 6.14e-99
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRFVR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGGKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164
           KTKDEKKAKKAEVMAK QK QGKGNV +GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKAQKAQGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Chy8G155080 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-70
Identity = 139/164 (84.76%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+Q KGN+ + AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Chy8G155080 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-67
Identity = 139/165 (84.24%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGR-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N  +  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Chy8G155080 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-12
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K    +      AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKKIAKIR-----TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

[Close]

BLAST of Chy8G155080 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-12
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K    +      AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKKIAKIR-----TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

The following BLAST results are available for this feature:

BLAST of Chy8G155080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65743	7.6e-75	90.80	60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1	[more]
Q9FUL4	2.3e-71	90.63	60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1	[more]
Q42347	1.6e-69	84.76	60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2	[more]
P50888	2.0e-67	87.27	60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1	[more]
P38666	2.2e-66	84.24	60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2	[more]

BLAST of Chy8G155080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C883	8.2e-80	100.00	60S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CH43	8.2e-80	100.00	60S ribosomal protein L24 OS=Cucumis melo OX=3656 GN=LOC103500860 PE=3 SV=1	[more]
A0A0A0KHD4	1.8e-79	99.39	TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G449310 PE=3 ...	[more]
A0A6J1CRP7	1.4e-76	96.95	60S ribosomal protein L24-like OS=Momordica charantia OX=3673 GN=LOC111013702 PE...	[more]
A0A2I4FX24	1.9e-76	95.73	60S ribosomal protein L24 OS=Juglans regia OX=51240 GN=LOC109002760 PE=3 SV=1	[more]

BLAST of Chy8G155080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462521.1	1.15e-103	100.00	PREDICTED: 60S ribosomal protein L24 [Cucumis melo] >XP_038881281.1 60S ribosoma...	[more]
XP_004143295.1	3.31e-103	99.39	60S ribosomal protein L24 [Cucumis sativus] >KGN48224.1 hypothetical protein Csa...	[more]
XP_022143901.1	2.14e-99	96.95	60S ribosomal protein L24-like [Momordica charantia]	[more]
XP_018836192.1	3.04e-99	95.73	60S ribosomal protein L24 [Juglans regia] >XP_042944316.1 60S ribosomal protein ...	[more]
XP_028788866.1	6.14e-99	95.73	60S ribosomal protein L24 isoform X1 [Prosopis alba]	[more]

BLAST of Chy8G155080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36620.1	1.2e-70	84.76	ribosomal protein L24	[more]
AT3G53020.1	1.6e-67	84.24	Ribosomal protein L24e family protein	[more]
AT2G44860.1	5.5e-12	35.94	Ribosomal protein L24e family protein	[more]
AT2G44860.2	5.5e-12	35.94	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..139
None	No IPR available	GENE3D	6.10.250.1270		coord: 69..140 e-value: 5.4E-22 score: 79.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..164
None	No IPR available	PANTHER	PTHR10792:SF37	60S RIBOSOMAL PROTEIN L24	coord: 1..164
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 6..58
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 8..46 e-value: 4.1E-4 score: 29.7
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 3..64 e-value: 9.4E-34 score: 117.5
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 3..67 e-value: 8.1E-29 score: 99.7
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..164
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 3..56 e-value: 6.34822E-20 score: 76.0718
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 10..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G155080.1	Chy8G155080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome