Chy8G153810 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G153810
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Histone H2A
Location	chrH08: 15428722 .. 15431182 (+)
RNA-Seq Expression	Chy8G153810
Synteny	Chy8G153810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTGGCGGCAAGGCAAAGAAAGGCTTCGCCGGCAGACGAGGTGGTGCCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAGGCCGGCCTCCAGTTTCCCGTTGGCAGAATTGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTCGAGTACCTCGCTGCTGAGGTGAATATTTACTACTACTTCGTTCTTCTCAGTTTGTCACTTTCGATTTACTTAATTTAGGGTTTCTTTTTTCAGTTTCTGTTGGAGGATTTTACATGTTTTGATTGTGTGTGTGAAATCTGATCGTTTATTCATGGATTATATGCTTGGATTGAAGTGCATTTTCTTTATTTCTTGTTAATGACTTAGAATTTGATTTTCTTAGCTCTTTCTCTTCATATAAAATCCCCAATTTAATGGAATTTGTTATTATTATTATTTATGCAATCTATTCTCTGATTTCTCTATGTGGTTTTGTGTATATAGACAAGTTCATTCTTGACAATCTAGAAAGGAAAAAATCACCTAAGGTTTTTTTTTTTTAAAAAAAAAAAAGAATTTTAAGGTCTTTCTTGATATCGATTTCACTTTTTTTAGCATTGGTTTGATAATCACCTTATTTTTTATTTTTAAAATTAAGCTTATAAACCTTTCTTCAATTTGTAAGATCGCCTTTGGTAACCACATTTTGTTTTTTTGTTCTTGGTTTTTGAAAATTAAGCCAATTGACTCTCATATTCTTAGGATGGTAAAGTTTAAAATCTTGGTCAAATTCTAAAACCAAAAACTACATTCTTTTAGTTTGGTTTTCTCGAAATGTAGCCAACAAAACTTAGAAACCAATAAATGAAAGTAGGATTTGTAGGTATAACTTTAAAAAACCAAATGATTAGCAAACATAGCTTAAATTTTCTGATAGGGTTCTTACTTTTTACCAATATTTTTAAAACTATTCTTAAGTTTTTTTTTTTTTTTAAAGTCATTTAAAAAATTTTAGAGTGTTTGGTAACCACTCATACCAACTCTTTTGAAGGTATTTTAAACCATTTTTATCAAAATTAAACAAAAATTAGCTCTGGAAAAATACTTTTAAATTTGACTAAGAATTCTACAAGATGTAATAGTTTTTATTTTCATCTTTGTTTGTATATTACTGTTTTCATGTTTTGTAAAGAGACACTTAAATCTCTAGTTAAATTCTTAAAACAAATACAAATTAATAGAACGTGGATATCACAAACACTTTTATTTCAGGTCTTTTTTTTTTTCAAAGATCGTTGTTTGGTAGAGATTTTAGAGTTTGAAAAAGCGTAGGAATGTTGTTTATAAATCAAACACTGTTTTTAATAACAAAATTCATTTTCTTTCAAATATTTAATTAGTTTATTTTAGTGAATCTGAAAAATTAGAAATTCAAACTGAATAGATTCCCAACTTCCCTCGGTATCCGCTTTGGCGTTGCTTTTATAACTCTTTTCCGCTGTCCTTTATGCCCTGATTCTGATGCTTTATCCAAACGACTTTGTGTTGATTTTGGCTTCATAGAAATTGCTGCTTTTTTTTTTTTGTATTTCAACAATTGTGGGGTCGGATATCAAACCATCAATCTTTAAGATGGTAAATCGATGTCTTTGTTTAGTAAGCTATGCTTGGATTGACACCTAAATTCATTCTAAAATAGAAATTCGAATTTTATGTTTCTTACCAACAGAAATTTTGATCATCCATTGAGGTCTAGTAGAGTTCTTTTAATTTATTCACCGATTGAATCTTACACACAAGTGTTTGATGATAATACAAGAATTGTTGTAATGCTGAGCTATTGGGTTATTGTGTTGAGGATATCTATAAAAGATGAAATATAAGAATCACTAACTTCCAAACTTGAACATATTGATGTCGTGGTGATTTAATATAGTATCTGAGTTAATCATCATTGGTAGACCTAATGGTAAACAAAGGTCATGAGTTTGATAAAGGGGTAGGAGGGATGAGTTCAATTTCTAGTGACTACCTACTTAGGGTTTAATATCCTACGAGTCTTCTTGATATTCAAATATTATAGGGCAAGGTAGGCTGTCTAATGAGATTAGTCGAGATGCACGTAAGTTTATCCAAAAACTCACAAATATATAGATATGTAGCATATGAGTAAGCATTCTATCACGTTATGCTTTAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTGCTCCTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATCGCTCATGGTGGGGTGCTTCCAAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGCGGCGGCAGCAGCAAAGGAGCCCAAGTCTCCCTCCAAGGGTACCAAGTCCCCTAAGAAGGCCTAG

mRNA sequence

ATGGATTCTGGCGGCAAGGCAAAGAAAGGCTTCGCCGGCAGACGAGGTGGTGCCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAGGCCGGCCTCCAGTTTCCCGTTGGCAGAATTGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTCGAGTACCTCGCTGCTGAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTGCTCCTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATCGCTCATGGTGGGGTGCTTCCAAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGCGGCGGCAGCAGCAAAGGAGCCCAAGTCTCCCTCCAAGGGTACCAAGTCCCCTAAGAAGGCCTAG

Coding sequence (CDS)

ATGGATTCTGGCGGCAAGGCAAAGAAAGGCTTCGCCGGCAGACGAGGTGGTGCCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCTGTCAAGGCCGGCCTCCAGTTTCCCGTTGGCAGAATTGGCCGCTACTTGAAGAATGGCCGTTACTCTCAACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTGCTCGAGTACCTCGCTGCTGAGGTTTTGGAACTGGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTGCTCCTGGCTGTGAGGAACGACGAGGAACTCGGGAAGCTTCTTGCCGGGGTGACAATCGCTCATGGTGGGGTGCTTCCAAACATCAACCCGGTCCTTCTTCCAAAGAAATCAGAGAGGGCGGCGGCAGCAGCAAAGGAGCCCAAGTCTCCCTCCAAGGGTACCAAGTCCCCTAAGAAGGCCTAG

Protein sequence

MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA*

Homology

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BLAST of Chy8G153810 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.9e-68
Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR G GPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           INP+LLPKKSE+AA+  K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of Chy8G153810 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 7.1e-67
Identity = 138/154 (89.61%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MD+G K KKG AG R G GPKKKPVSRSVKAGLQFPVGRIGR+LK GRY+QRVG+GAPVY
Sbjct: 1   MDTGAKLKKG-AGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAA-KEPKSPSKGTKSPKKA 154
           INPVLLPKK+E+AAAAA KEPKSP+K TKSPKKA
Sbjct: 121 INPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

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BLAST of Chy8G153810 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.7e-63
Identity = 131/153 (85.62%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M++ GKAKKGF GR+G  GP+KK V+RSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   METAGKAKKGFGGRKG--GPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           INPVLLPKK+  A  AAKEPKSPSK  KSPKKA
Sbjct: 121 INPVLLPKKT--AEKAAKEPKSPSKAGKSPKKA 149

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BLAST of Chy8G153810 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-62
Identity = 129/154 (83.77%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MD+  K KKG  GR+GG GP+KK V+RS++AGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   MDASTKTKKGAGGRKGG-GPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPS-KGTKSPKKA 154
           INPVLLPKK+ER+   +KEPKSP  K  KSPKKA
Sbjct: 121 INPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

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BLAST of Chy8G153810 vs. ExPASy Swiss-Prot
Match: A2Y5G8 (Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-62
Identity = 134/160 (83.75%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 1   MDSGGKA--KKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAP 60
           M+ G K   K G  GRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQR+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSERAAA----AAKEPKSPSKG-TKSPKKA 154
           PNINPVLLPKK+  AAA      K PKSP K  TKSPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

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BLAST of Chy8G153810 vs. ExPASy TrEMBL
Match: A0A5A7U1I6 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSERA  AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

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BLAST of Chy8G153810 vs. ExPASy TrEMBL
Match: A0A1S3BHV2 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSERA  AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

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BLAST of Chy8G153810 vs. ExPASy TrEMBL
Match: A0A0A0KXF2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 150/153 (98.04%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGA  KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSER AAAAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSER-AAAAKEPKSPSKGTKSPKKA 152

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BLAST of Chy8G153810 vs. ExPASy TrEMBL
Match: A0A6J1CR43 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 149/153 (97.39%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           INPVLLPKKSER AAA KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSER-AAAGKEPKSPSKGTKSPKKA 151

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BLAST of Chy8G153810 vs. ExPASy TrEMBL
Match: A0A6A4LE10 (Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.3e-66
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+SGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           INPVLLPKK+E+  AAAKEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKNEK--AAAKEPKSPSKATKSPKKA 150

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BLAST of Chy8G153810 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone H2A.4 [Cucumis melo var. makuwa])

HSP 1 Score: 290 bits (741), Expect = 2.21e-98
Identity = 151/153 (98.69%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERA  AAKEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

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BLAST of Chy8G153810 vs. NCBI nr
Match: XP_004142082.1 (probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_018188 [Cucumis sativus])

HSP 1 Score: 281 bits (718), Expect = 6.87e-95
Identity = 150/153 (98.04%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKGFAGRRGGA  KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERAAAA KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAA-KEPKSPSKGTKSPKKA 152

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BLAST of Chy8G153810 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 276 bits (705), Expect = 6.37e-93
Identity = 149/153 (97.39%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKKSERAAA  KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAG-KEPKSPSKGTKSPKKA 151

[Close]

BLAST of Chy8G153810 vs. NCBI nr
Match: XP_038881325.1 (probable histone H2A.4 [Benincasa hispida])

HSP 1 Score: 265 bits (678), Expect = 8.92e-89
Identity = 140/153 (91.50%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MD+G KAKKG AGR+GG GPKKKPVSRSVKAGLQFPVGRI RYLK GRYS+RVGTGAPVY
Sbjct: 1   MDTGDKAKKGVAGRKGGGGPKKKPVSRSVKAGLQFPVGRIDRYLKEGRYSRRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 153
           INPVLL KKSERA AAAKEPKS SK T+SPKKA
Sbjct: 121 INPVLLRKKSERAVAAAKEPKSSSKSTRSPKKA 153

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BLAST of Chy8G153810 vs. NCBI nr
Match: KAE9455642.1 (hypothetical protein C3L33_12460, partial [Rhododendron williamsianum])

HSP 1 Score: 264 bits (674), Expect = 3.28e-88
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+SGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 153
           INPVLLPKK+E+AAA  KEPKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKNEKAAA--KEPKSPSKATKSPKKA 150

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BLAST of Chy8G153810 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-69
Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR G GPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           INP+LLPKKSE+AA+  K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of Chy8G153810 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 245.0 bits (624), Expect = 4.0e-65
Identity = 135/177 (76.27%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKG AGRR G GPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           VRNDEELG LL GVTIAHGGVLPNINP+LLPKKSE+AA+  K PKSPSK TKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

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BLAST of Chy8G153810 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 211.5 bits (537), Expect = 4.9e-55
Identity = 115/153 (75.16%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+S GK KK F GR+    PK K VS+S+KAGLQFPVGRI R+LK GRY+QR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           IN VLLPKKS    A  K  KSP    KSPKKA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSP---VKSPKKA 150

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BLAST of Chy8G153810 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-50
Identity = 108/148 (72.97%), Postives = 123/148 (83.11%), Query Frame = 0


Query: 6   KAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVL 65
           K  +G  GR+G  G +KK VS+SVKAGLQFPVGRI RYLK GRY+ R G+GAPVYLAAVL
Sbjct: 9   KPTRGAGGRKG--GDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVL 68

Query: 66  EYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVL 125
           EYLAAEVLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVL
Sbjct: 69  EYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVL 128

Query: 126 LPKKSERAAAAAKEPKSPSKGTKSPKKA 154
           LPKKS  +++ A++    +  TKSPKKA
Sbjct: 129 LPKKSTASSSQAEK----ASATKSPKKA 150

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BLAST of Chy8G153810 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 177.6 bits (449), Expect = 7.9e-45
Identity = 92/127 (72.44%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 13  GRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEV 72
           G+  G+G  KK  SRS KAGLQFPVGRI R+LKNG+Y+ RVG GAPVYLAAVLEYLAAEV
Sbjct: 5   GKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEV 64

Query: 73  LELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSER 132
           LELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+  
Sbjct: 65  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGA 124

Query: 133 AAAAAKE 140
           +  +A E
Sbjct: 125 SKPSADE 131

The following BLAST results are available for this feature:

BLAST of Chy8G153810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ46	4.9e-68	88.24	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
Q9M531	7.1e-67	89.61	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P19177	3.7e-63	85.62	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]
Q2HU65	1.4e-62	83.77	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
A2Y5G8	1.4e-62	83.75	Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3...	[more]

BLAST of Chy8G153810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1I6	2.8e-74	98.69	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 P...	[more]
A0A1S3BHV2	2.8e-74	98.69	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1	[more]
A0A0A0KXF2	1.3e-71	98.04	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1	[more]
A0A6J1CR43	3.2e-70	97.39	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1	[more]
A0A6A4LE10	1.3e-66	91.50	Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE...	[more]

BLAST of Chy8G153810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447608.1	2.21e-98	98.69	PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone ...	[more]
XP_004142082.1	6.87e-95	98.04	probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_01...	[more]
XP_022143711.1	6.37e-93	97.39	histone H2A [Momordica charantia]	[more]
XP_038881325.1	8.92e-89	91.50	probable histone H2A.4 [Benincasa hispida]	[more]
KAE9455642.1	3.28e-88	91.50	hypothetical protein C3L33_12460, partial [Rhododendron williamsianum]	[more]

BLAST of Chy8G153810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	3.5e-69	88.24	histone H2A 12	[more]
AT5G02560.2	4.0e-65	76.27	histone H2A 12	[more]
AT5G59870.1	4.9e-55	75.16	histone H2A 6	[more]
AT5G27670.1	1.6e-50	72.97	histone H2A 7	[more]
AT3G20670.1	7.9e-45	72.44	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 23..45 score: 69.23 coord: 67..80 score: 89.46 coord: 81..95 score: 73.78 coord: 52..67 score: 86.43 coord: 109..127 score: 75.79
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 12..132 e-value: 5.2E-78 score: 275.2
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 20..129 e-value: 6.83382E-66 score: 194.476
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 21..98 e-value: 2.1E-12 score: 47.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..138 e-value: 1.8E-62 score: 210.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 26..129
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 101..134 e-value: 2.6E-18 score: 65.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 9..147
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 9..147
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 31..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G153810.1	Chy8G153810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity