Chy8G152420 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G152420
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	High mobility group B protein 1
Location	chrH08: 14270732 .. 14273634 (-)
RNA-Seq Expression	Chy8G152420
Synteny	Chy8G152420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGATGACGACGTCAGATGGGCCGTGGGTCCAAAAGGATACACGTGTGAAAAGAGGGAAGGGCAGTGGACCGATGGGCCCAAATGGGAAACGTGTGAGGAGTTGGGAAGGTACGTGCCACAGAGTTAATGTAAATAATATCTGTGTTTGTCACTATCTGTATGGGATCGCTTTGGCGGCAATAATCATTTCCACAAAACCCAAAAGATAATTCCCTTCCGATCATTTCATTTTCATCATATATTCTTCCTTTTTTATTTGTTTATTTCTTAAAATATCGGTCACTGGCTATTGCCAGTAACAGGTCTCTCTTCCGGGTCTCCTGTGGCGGCAACAGTTGCATGTGTTACAGCTACTTCCGGTTACTCTAAATCAATTCCCTTCTCTCCCTGGGTACGTTCTTTTGAATTCTTCTCTCTTCTTCTATTCTCTTTCTCTCTCTCTCTCTCTCAGTCTTTGAAAAATCTCTGGTATTGATTCTCTTCTTTCCTTTCCGATTCCTTTTGGATCGGACGGCTTGCTTCATCTAAGGTTATCGATTCTCTCCTTTCTAGATCTCTTCTCGTCTTTCTTCCTTTTATTTTTAATCTGACTCTCTTTGTTTTTCCTCTATAATTATCGTCTGTTCTACCTAATTTCTTCCGTTTTTAAGGTCTTGTTGCGTTTTTCCTTCTAATTCTCTGGAGAACGATCGCCTTTTGAGCTATTTGTGCCGTTTTTTTTTTTTTTTTTTAATTTGTTATCTTAATAATTTCTGCTGGAGTTGTTTTGAGTGAAGTGAAGAAACAAGTAGCTGTAGGAGTTCAAGAGTTAAAATTGTGGTAATTTAATTACATTTTAGGTTTACTTTTCAGCTTAATGCTCTGTTAGCGATTTAAACAGGTAATTTTTCTTATGCGAAAGACTTGGAGTCGACAGAGTTTAGACTTTTGATTTATTGTATGTAGTTTTCTACTGTGAATTATCTGTAGCTGGTTGGTTGATTGTTAGTTCGTAAATTCTACAGATGGCTTTTAAAATTGAAATTTAGGGATTCTGGTCTCGTTAAGGTCAAATATGTTCAAGAACATGTATAGTATTACTGTTTACTTTTGTTTGCTTCTGGATGTTTGGATGTTCACGTTCAGCAGTCATTACGTATCATATAGACTTAGTGTTCCTTTGACTTTTGTCAAAACGGTTTCTAGAGGCTGCTTTCACTGCATTTCTGCACTTTGGCATGTACTTTTATGTTAGAAATTGTCTTTATTGTTTCCTGTACTGTTTGAGGTACTGCTCCTTTTTAGTTTGGCTCAAATTGTTCTTGTTCTTATTCTCGTGCATGTAGGTTGTTTCTTAAACTATTGGAGTTGTACTAACTTGCTGTATTGTTGTACTGCTGCTCAACGAGTAGTTATTTTGTACAGGTATTTTGCCTTTCATAATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTTTCCAAAGAAGCTTTGAAGCCTGTCGATGATAGGTAGTTTTTTTTGCCTATTGTTCCACTTCATGTCTCTTGTGTTATTGCTCTGATGAAACTTCGTAAATTGTTTTGTTATGCCTGTCTGTGATCCATTGTTGGCATCTTTTTTTTGGAGTATCGAATTTCCAGCAAGTTTTTGACTTCCATTGATGTCTAATATCCACGTACTTGGTTATGTGTATACAGTGTTTACAGGAATTTTGTAGTGACGGATCATAAATATCTCATTTCTTTTCAGAAAGGTTGGGAAGCGAAAGGCTGTCGTTAAAGCTGACAAGGGTACCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCCTGTTCGTATTTGTTCTCTGCCGTTTTCTTTTCAAGCTAAAAACTATTTGTTTGATTTCCTTAAGGAGAAAAATTCTCTTTTTTGTTTAAATTTTATATAACAGCGAGGAGTTCAGAAAGGAGTACAAAAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTATGTGATCTGTGAAACTGATCTAAAGATTCACATAATTCCCAATTGGTGATGCAAATATAGAGTAACTAATTAACATTTTCTTCACTCCTGCAGGTCGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTAAGTCATGCTGTAAGTATTGTTGTGTATTACATAAAAATAAAAGCATGCTCGAGTCATTGTCCTTTTTACTGCATGCATTTATGTATGATGTCGATGAAGGAAACACTGTTTATAGAGCTGTGGCATTTGTGTTGCTGTCAAATCTTGAAAAACAGTCACTTTCAGCAATTCACATTGAATATCAAGTTGATACGTGTGTGCATGCCTTTTTTTCTTTTCCTTTTTCGTATTGTTTTGTTTTGTTTTGTTTTAATAGTTTTTTTTAATGAGAAATCACAACTTTCATTTAAAAAAACCAACCCACAAAAAACACCCCAACTAAAGGAAGGGGTCCATATGAAGCCAATGAAAGAATCACAACTTCAATAGTTTTTCTGCCTCTGTATTGATATTTTCTTACAATTGGGCATTTACACTTCTATTCTCTCAACAGTATTTTTCTTATTGGGTTTCTATGTATAATAACTTCTTAATGGTTTAAAAGGAAAAAGCACCATATGAAGCCAAGGCAGCTAAGAGGAAGGCGGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGTAGTTGTGCTCTGTTTTTTTGTGTATTAATTAAATTTATAAGACACGACTCCAAACTTAAAGTGCTCATACACATTTTTTCGGGGAATATAGGCCAGCGCTGCAGATGATGAAGAATCAGAGAGGTCAAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGTATTTTTTTAA

mRNA sequence

ATGGAGAGGATGACGACGTCAGATGGGCCGTGGGTCCAAAAGGATACACGTGTGAAAAGAGGGAAGGGCAGTGGACCGATGGGCCCAAATGGGAAACGTGTGAGGAGTTGGGAAGTAACAGGTCTCTCTTCCGGGTCTCCTGTGGCGGCAACAGTTGCATGTGTTACAGCTACTTCCGGTTACTCTAAATCAATTCCCTTCTCTCCCTGGGGGTCCAAGGGTAAGGGAACATCAAGGGTTTCCAAAGAAGCTTTGAAGCCTGTCGATGATAGAAAGGTTGGGAAGCGAAAGGCTGTCGTTAAAGCTGACAAGGGTACCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCCTCGAGGAGTTCAGAAAGGAGTACAAAAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTCGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTAAGTCATGCTGAAAAAGCACCATATGAAGCCAAGGCAGCTAAGAGGAAGGCGGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGCCAGCGCTGCAGATGATGAAGAATCAGAGAGGTCAAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGTATTTTTTTAA

Coding sequence (CDS)

ATGGAGAGGATGACGACGTCAGATGGGCCGTGGGTCCAAAAGGATACACGTGTGAAAAGAGGGAAGGGCAGTGGACCGATGGGCCCAAATGGGAAACGTGTGAGGAGTTGGGAAGTAACAGGTCTCTCTTCCGGGTCTCCTGTGGCGGCAACAGTTGCATGTGTTACAGCTACTTCCGGTTACTCTAAATCAATTCCCTTCTCTCCCTGGGGGTCCAAGGGTAAGGGAACATCAAGGGTTTCCAAAGAAGCTTTGAAGCCTGTCGATGATAGAAAGGTTGGGAAGCGAAAGGCTGTCGTTAAAGCTGACAAGGGTACCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCCTCGAGGAGTTCAGAAAGGAGTACAAAAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTCGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTAAGTCATGCTGAAAAAGCACCATATGAAGCCAAGGCAGCTAAGAGGAAGGCGGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGCCAGCGCTGCAGATGATGAAGAATCAGAGAGGTCAAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGTATTTTTTTAA

Protein sequence

MERMTTSDGPWVQKDTRVKRGKGSGPMGPNGKRVRSWEVTGLSSGSPVAATVACVTATSGYSKSIPFSPWGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSKKASAADDEESERSKSEVNDEDEASEEVFF*

Homology

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BLAST of Chy8G152420 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.8e-45
Identity = 107/149 (71.81%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 72  SKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAFF 131
           +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PSAFF
Sbjct: 4   AKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPSAFF 63

Query: 132 VFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAY 191
           VFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M AY
Sbjct: 64  VFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAY 123

Query: 192 DSKKASAADDEESERSKSEVNDEDEASEE 221
           +      +D  ESE+S+SE+NDEDEAS E
Sbjct: 124 NKNLEEGSD--ESEKSRSEINDEDEASGE 148

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BLAST of Chy8G152420 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.0e-29
Identity = 80/131 (61.07%), Postives = 102/131 (77.86%), Query Frame = 0


Query: 92  KVGKRKAVVKAD-----KGTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENP 151
           K GK KA  K+D     K     TKK  KA KDPNKPKRPPSAFFVF+E+FRK YK ++P
Sbjct: 2   KGGKSKA--KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHP 61

Query: 152 NVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSKKAS-AADDEESE 211
           N K+V+ VGKAGG+KWK L+ AEKAP+ +KA KRK EYEK ++AY+ K+A+ AA++EES+
Sbjct: 62  NNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESD 121

Query: 212 RSKSEVNDEDE 217
           +S+SEVND+DE
Sbjct: 122 KSRSEVNDDDE 130

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BLAST of Chy8G152420 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.0e-29
Identity = 85/143 (59.44%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 81  SKEALKPVDDR-KVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRK 140
           SK   K  D +  V K+ A  KA    ++P  K  KA KDPNKPKRPPSAFFVF+EEFRK
Sbjct: 6   SKTESKRADPKLAVNKKGAATKA----RKPAGKG-KAAKDPNKPKRPPSAFFVFMEEFRK 65

Query: 141 EYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSKKA--- 200
            + +E+P  KAVSAVGKA G KWK++S AEKAPY AK+ KRK EYEK MRAY+ K+A   
Sbjct: 66  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 125

Query: 201 SAADDEESERSKSEVNDEDEASE 220
           +  D+EESE+S SEVNDED+  E
Sbjct: 126 TGGDEEESEKSVSEVNDEDDDEE 143

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BLAST of Chy8G152420 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 80/131 (61.07%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 92  KVGKRKAVVKADK--GTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVK 151
           K  K KA  ++ K   TK+P K    A KDPNKPKRP SAFFVF+E+FR  YK E+P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 152 AVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSK-KASAADDEESERSK 211
           +V+AVGKAGGEKWKSLS +EKAPY AKA KRK EYEK M+AY+ K +    +DEES++S 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query: 212 SEVNDEDEASE 220
           SEVNDED+A +
Sbjct: 122 SEVNDEDDAED 132

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BLAST of Chy8G152420 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-27
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           G K KG S+ +        + K+   K    A KG K+P K   K  KDPNKPKRPPSAF
Sbjct: 3   GGKSKGESKKA--------ETKLAVNKKGAAATKGGKKPAKG--KEPKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVF+ +FR++YK+++PN K+V+AVGKA GE+WKSLS  EKAPY  +A K+K EYE  ++A
Sbjct: 63  FVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEE 221
           Y+ K     D+E S++SKSEVNDEDE  E+
Sbjct: 123 YNKKLEGKDDEEGSDKSKSEVNDEDEDEED 142

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BLAST of Chy8G152420 vs. ExPASy TrEMBL
Match: A0A5A7SRU9 (High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold994G00070 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.1e-71
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF
Sbjct: 3   GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA
Sbjct: 63  FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEEVFF 224
           YDSKKASAADDEESERSKSEVNDEDEASEEVFF
Sbjct: 123 YDSKKASAADDEESERSKSEVNDEDEASEEVFF 155

[Close]

BLAST of Chy8G152420 vs. ExPASy TrEMBL
Match: A0A1S3BML2 (high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.8e-69
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF
Sbjct: 3   GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA
Sbjct: 63  FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEE 221
           YDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 123 YDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of Chy8G152420 vs. ExPASy TrEMBL
Match: A0A0A0L1B2 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 8.8e-69
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKG KRPTKKDLKAKKDPNKPKRPPSAF
Sbjct: 3   GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA
Sbjct: 63  FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEE 221
           YDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 123 YDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of Chy8G152420 vs. ExPASy TrEMBL
Match: A0A6J1DBK9 (high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 5.5e-63
Identity = 139/150 (92.67%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           GSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPSAF
Sbjct: 3   GSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLMRA
Sbjct: 63  FVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMRA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEE 221
           YDSKKAS   DEESERSKSEVNDEDEASEE
Sbjct: 123 YDSKKAS---DEESERSKSEVNDEDEASEE 149

[Close]

BLAST of Chy8G152420 vs. ExPASy TrEMBL
Match: A0A6J1ISM4 (high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.0e-61
Identity = 134/150 (89.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           G KGKGTSRVSKEALKPVDDRKVGKRKA +KADKG KRPTKK+LKA KDPNKPKRPPSAF
Sbjct: 3   GPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVFLEEFR+EYKRENPNVKAVSAVGKAGG++W+SL+H EKAPYEAKAAKRKAEYEKLMRA
Sbjct: 63  FVFLEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLMRA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEE 221
           YDSKKAS ADDEE ERSKSEVN ED+ASEE
Sbjct: 123 YDSKKASEADDEELERSKSEVNGEDDASEE 152

[Close]

BLAST of Chy8G152420 vs. NCBI nr
Match: KAA0031875.1 (high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobility group B protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (711), Expect = 1.41e-92
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF
Sbjct: 3   GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA
Sbjct: 63  FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEEVFF 223
           YDSKKASAADDEESERSKSEVNDEDEASEEVFF
Sbjct: 123 YDSKKASAADDEESERSKSEVNDEDEASEEVFF 155

[Close]

BLAST of Chy8G152420 vs. NCBI nr
Match: XP_008449957.1 (PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDICTED: high mobility group B protein 1 [Cucumis melo])

HSP 1 Score: 271 bits (692), Expect = 1.84e-89
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF
Sbjct: 3   GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA
Sbjct: 63  FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEE 220
           YDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 123 YDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of Chy8G152420 vs. NCBI nr
Match: XP_011653690.1 (high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility group B protein 1 [Cucumis sativus] >XP_031740703.1 high mobility group B protein 1 [Cucumis sativus] >KGN54377.1 hypothetical protein Csa_017866 [Cucumis sativus])

HSP 1 Score: 268 bits (686), Expect = 1.45e-88
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKG KRPTKKDLKAKKDPNKPKRPPSAF
Sbjct: 3   GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA
Sbjct: 63  FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEE 220
           YDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 123 YDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of Chy8G152420 vs. NCBI nr
Match: XP_038883904.1 (high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobility group B protein 1 [Benincasa hispida] >XP_038883906.1 high mobility group B protein 1 [Benincasa hispida])

HSP 1 Score: 263 bits (672), Expect = 2.10e-86
Identity = 145/150 (96.67%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           GSKGKGTSRVSKEALKPVDDRKVGKRKA VKADKG  RPTKKDLKAKKDPNKPKRPPSAF
Sbjct: 3   GSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGVNRPTKKDLKAKKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEA+AAKRKAEYEKLM+A
Sbjct: 63  FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEARAAKRKAEYEKLMKA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEE 220
           YDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 123 YDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of Chy8G152420 vs. NCBI nr
Match: XP_022151579.1 (high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobility group B protein 1 [Momordica charantia])

HSP 1 Score: 249 bits (635), Expect = 8.91e-81
Identity = 139/150 (92.67%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 71  GSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAF 130
           GSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPSAF
Sbjct: 3   GSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAF 62

Query: 131 FVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRA 190
           FVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLMRA
Sbjct: 63  FVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMRA 122

Query: 191 YDSKKASAADDEESERSKSEVNDEDEASEE 220
           YDSKKAS   DEESERSKSEVNDEDEASEE
Sbjct: 123 YDSKKAS---DEESERSKSEVNDEDEASEE 149

[Close]

BLAST of Chy8G152420 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 184.9 bits (468), Expect = 7.2e-47
Identity = 108/150 (72.00%), Postives = 124/150 (82.67%), Query Frame = 0


Query: 72  SKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAFF 131
           +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PSAFF
Sbjct: 4   AKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPSAFF 63

Query: 132 VFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAY 191
           VFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M AY
Sbjct: 64  VFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAY 123

Query: 192 DSKKASAADDEESERSKSEVNDEDEASEEV 222
           +      +D  ESE+S+SE+NDEDEAS EV
Sbjct: 124 NKNLEEGSD--ESEKSRSEINDEDEASGEV 149

[Close]

BLAST of Chy8G152420 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 183.0 bits (463), Expect = 2.7e-46
Identity = 107/149 (71.81%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 72  SKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAFF 131
           +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PSAFF
Sbjct: 4   AKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPSAFF 63

Query: 132 VFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAY 191
           VFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M AY
Sbjct: 64  VFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAY 123

Query: 192 DSKKASAADDEESERSKSEVNDEDEASEE 221
           +      +D  ESE+S+SE+NDEDEAS E
Sbjct: 124 NKNLEEGSD--ESEKSRSEINDEDEASGE 148

[Close]

BLAST of Chy8G152420 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 183.0 bits (463), Expect = 2.7e-46
Identity = 107/149 (71.81%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 72  SKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAFF 131
           +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PSAFF
Sbjct: 4   AKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPSAFF 63

Query: 132 VFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAY 191
           VFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M AY
Sbjct: 64  VFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAY 123

Query: 192 DSKKASAADDEESERSKSEVNDEDEASEE 221
           +      +D  ESE+S+SE+NDEDEAS E
Sbjct: 124 NKNLEEGSD--ESEKSRSEINDEDEASGE 148

[Close]

BLAST of Chy8G152420 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 183.0 bits (463), Expect = 2.7e-46
Identity = 107/149 (71.81%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 72  SKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAFF 131
           +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PSAFF
Sbjct: 4   AKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPSAFF 63

Query: 132 VFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAY 191
           VFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M AY
Sbjct: 64  VFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAY 123

Query: 192 DSKKASAADDEESERSKSEVNDEDEASEE 221
           +      +D  ESE+S+SE+NDEDEAS E
Sbjct: 124 NKNLEEGSD--ESEKSRSEINDEDEASGE 148

[Close]

BLAST of Chy8G152420 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 128.6 bits (322), Expect = 6.1e-30
Identity = 84/136 (61.76%), Postives = 100/136 (73.53%), Query Frame = 0


Query: 92  KVGKRKAVVKADK--GTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVK 151
           K  K KA  ++ K   TK+P K    A KDPNKPKRP SAFFVF+E+FR  YK E+P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 152 AVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSK-KASAADDEESERSK 211
           +V+AVGKAGGEKWKSLS +EKAPY AKA KRK EYEK M+AY+ K +    +DEES++S 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query: 212 SEVNDEDEA---SEEV 222
           SEVNDED+A   SEEV
Sbjct: 122 SEVNDEDDAEDGSEEV 137

The following BLAST results are available for this feature:

BLAST of Chy8G152420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	3.8e-45	71.81	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P40619	5.0e-29	61.07	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P26585	5.0e-29	59.44	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	1.1e-28	61.07	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40620	2.8e-27	52.00	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of Chy8G152420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRU9	1.1e-71	100.00	High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BML2	1.8e-69	100.00	high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=...	[more]
A0A0A0L1B2	8.8e-69	99.33	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=...	[more]
A0A6J1DBK9	5.5e-63	92.67	high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 P...	[more]
A0A6J1ISM4	3.0e-61	89.33	high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326...	[more]

BLAST of Chy8G152420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031875.1	1.41e-92	100.00	high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobi...	[more]
XP_008449957.1	1.84e-89	100.00	PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDIC...	[more]
XP_011653690.1	1.45e-88	99.33	high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility ...	[more]
XP_038883904.1	2.10e-86	96.67	high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobilit...	[more]
XP_022151579.1	8.91e-81	92.67	high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobil...	[more]

BLAST of Chy8G152420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.2	7.2e-47	72.00	high mobility group B1	[more]
AT3G51880.1	2.7e-46	71.81	high mobility group B1	[more]
AT3G51880.3	2.7e-46	71.81	high mobility group B1	[more]
AT3G51880.4	2.7e-46	71.81	high mobility group B1	[more]
AT1G20696.3	6.1e-30	61.76	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 122..193 e-value: 2.4E-25 score: 100.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 123..191 e-value: 2.5E-23 score: 82.3
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 123..192 score: 19.726849
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 105..210 e-value: 1.3E-25 score: 91.6
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 109..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..179
None	No IPR available	PANTHER	PTHR46261:SF1	HIGH MOBILITY GROUP B PROTEIN 1	coord: 72..220
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 123..189 e-value: 1.33207E-19 score: 77.2829
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 72..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G152420.1	Chy8G152420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin