Chy8G151820 (gene) Cucumber (hystrix) v1

Overview
NameChy8G151820
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
LocationchrH08: 13326023 .. 13328008 (-)
RNA-Seq ExpressionChy8G151820
SyntenyChy8G151820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATGGACATTAATATCAAAAACTTTGATATTCCCAAATCCACATGGACTCAAGCCACTATCTGGGGAGGACATGTCATCCACTCCAACAAGTATGACACATGATGCAAGATCATCTAGGCTAAGTAAGAAAAGGCAGCCATATTCAAGGGACCTTATGGACACATTTCACACAGGTATGTGAGAAACTTCCAAGAAAATTGGAAACATTGTTGCATGGCAGAAAGAAAAAATCGAAATAGAATCATCCCTACATAAACAATTATATGCTGAATTTACAGACTATTATTGGAATGGACGTGGACGATTGTTTAATTATAGTTGAGTCTCTATTACCTGATCCCATGATGTTGCACGAACTCCTTGACTACCTAGCAGAATGGAAGTACATAAAATGCATGTGTATCTTAGGAAGACAACCATAATCATCGCTAAATGTAACTTTAATTAACTTTTACTTTTATTTAACTCTTTTGGTTATGCTTACTTTTGAAACATACTAGACTCTTTTACATGTTGCTTAACTAGAACCTTTGTAAACTCCATCAAATTAAATAACTTGTTATATTATGTGGATGATTTGTAATATTCCTAATTAGACCATTCATGTTAATGCAACTTAAATCAAAATTATTGTTATTGAATGTTAAAATTTATTGTTTTTACATTATTGTCATGAAAAATCAATAGATCAATAAAGAAATTGAATCAGAGGTACAACATTTGGAAAAAAAAACATTTCAATTCAATAATTGATACATGATAAAATTTAGAATGTGCAATTCAAAAAAAGAAAAAACTAAACAAGCTAGTTAAACCCAGAAATGTAAAACTAGCATCCCAAACATAGACATCAGAAACCCAGATTTCCAAATCTTGCACTCTAAACACAAACATTTCTAATTTCCAATCTTTAAAAACCCCCATCAGATAAGTTCACAAACATTTAATTTTTAGACATTTGATTCCAAACATGCGCAACAAACAAGCCTTTGAAGATTAGATACATTTGAGAATCCAAAACTTAAACATCAACCAACAAAACTACGTGCTATTAAAACTTTCAAATACAGTAAAGGACGTGGAGGGTAATAATTCACTTTCTAACAAAGAATGAGGATTATGGGATGAAGGAACGTGTCATGATGTGATGGGCTTGATACTGTGAGGAGGTTGGGAAGTAAACTAACCATTTTAATTCTTTCCAAAACACATTAATTAAAAACCGACAAAAAAATATAAAGTTAAGTGATAGCTCAATACTTAAGGTTTAAATAAATACTTCTAATTTTCATTCTATTTTCAAATATCTAAAATTTAAACCTTTTTTTTTTTTTTTTTTACTTTTAAAACAATATATTATAGGCTAAAACAAAATGAGAAAATGAATTATATGAACCAAAATCATAATTCATCCATAAGTATTTTGTCTTTTCAATTGCATTTTGCAGTATGTAAAGGTAAGAATATTTGAAAACTCTTATTTCTTGAATAACGAAATGTCTTTTCTAAAACTTAGTAATTATTTATGTGTTATTAATGTTTTATCAACTACTTTTTTTTTCAAAAAGAAAAAGTTTTAATATTTGGAAAAATGGTTTATTTTAATCTACATAGGTTTTTATTATAGTAACTAACAAAAATTGACTTGATATTTCTGACTAATATTTCTGACTAATACAACTTTAAAAATTAGAGTGTGGAATTTTTCTCTTTTTACACAATATAGATTAAAAGTCCTTTTGGATTGCTCTTTTTAACTTTAAACTCTTTTTATAGAAAAAAAATTACGTTTAAAATACACTTCAAAATGCTCAAACATGATTCAAAATGACTTATTTTTCAAAATTAAACATTTAAAAATATATTTCAAACACACACCCTGTATAGCATTACAAATTCAAGAGGTGATTAACTAAAAAAACCTTGGATCTAAAACATAGAAGCTTACACTACACCATTACTCATAAAGCAAAGCATTTAA

mRNA sequence

ATGACATGGACATTAATATCAAAAACTTTGATATTCCCAAATCCACATGGACTCAAGCCACTATCTGGGGAGGACATGTCATCCACTCCAACAAGTATGACACATGATGCAAGATCATCTAGGCTAAGTAAGAAAAGGCAGCCATATTCAAGGGACCTTATGGACACATTTCACACAGTATGTAAAGAAGCTTACACTACACCATTACTCATAAAGCAAAGCATTTAA

Coding sequence (CDS)

ATGACATGGACATTAATATCAAAAACTTTGATATTCCCAAATCCACATGGACTCAAGCCACTATCTGGGGAGGACATGTCATCCACTCCAACAAGTATGACACATGATGCAAGATCATCTAGGCTAAGTAAGAAAAGGCAGCCATATTCAAGGGACCTTATGGACACATTTCACACAGTATGTAAAGAAGCTTACACTACACCATTACTCATAAAGCAAAGCATTTAA

Protein sequence

MTWTLISKTLIFPNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTFHTVCKEAYTTPLLIKQSI*
Homology
[Close]
BLAST of Chy8G151820 vs. ExPASy TrEMBL
Match: A0A5A7T590 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00100 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 13  PNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTF 58
           PNPHGL+PLSGEDM STPTSMTHDA SSRLSKKR+ YSRDLMDTF
Sbjct: 80  PNPHGLEPLSGEDMLSTPTSMTHDAESSRLSKKRRSYSRDLMDTF 124

[Close]
BLAST of Chy8G151820 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-11
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 13  PNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTFHTVCKE 64
           PNPHGL+P SGEDM STPTSMTHDA SSR SKKR+ YS DLMDTF    +E
Sbjct: 283 PNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSYSGDLMDTFRASMRE 333

[Close]
BLAST of Chy8G151820 vs. ExPASy TrEMBL
Match: A0A5A7VE44 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00500 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.7e-11
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 13  PNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTFHTV 61
           PNPHGLKP SGEDM+STPTSM HDA SSR SKKR+ YS DL++TFH +
Sbjct: 195 PNPHGLKPPSGEDMTSTPTSMAHDAGSSRPSKKRRSYSGDLVNTFHAI 242

[Close]
BLAST of Chy8G151820 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.3e-11
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 13  PNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTF 58
           PNPHGL+P SGEDM STPTSM HDA SSR SKKR+ YSRDLMDTF
Sbjct: 261 PNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSRDLMDTF 305

[Close]
BLAST of Chy8G151820 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 13  PNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTFHTVCKE 64
           PNPHGL+P SGEDMSSTPTSM HD  SS+ SKKR+ YS DLMDTF    +E
Sbjct: 92  PNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSYSEDLMDTFRASMRE 142

[Close]
BLAST of Chy8G151820 vs. NCBI nr
Match: KAA0038163.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK31532.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 8.57e-19
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 13  PNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTF 57
           PNPHGL+PLSGEDM STPTSMTHDA SSRLSKKR+ YSRDLMDTF
Sbjct: 80  PNPHGLEPLSGEDMLSTPTSMTHDAESSRLSKKRRSYSRDLMDTF 124

[Close]
BLAST of Chy8G151820 vs. NCBI nr
Match: KAA0051721.1 (uncharacterized protein E6C27_scaffold60G001070 [Cucumis melo var. makuwa] >TYK01305.1 uncharacterized protein E5676_scaffold827G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 4.82e-15
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 13  PNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTFHTVCKE 63
           PNPHGL+P SGEDM STPTSM HDA SSR  KKR+ YS DL+D F  VCK+
Sbjct: 58  PNPHGLEPPSGEDMPSTPTSMAHDAGSSRPRKKRRSYSGDLVDNFAQVCKK 108

[Close]
BLAST of Chy8G151820 vs. NCBI nr
Match: KAA0067269.1 (uncharacterized protein E6C27_scaffold418G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 6.91e-15
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 13 PNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTF 57
          PNP+GL+P S ED+SSTPTSMTHDARSSR SKKR+ YS DLMDTF
Sbjct: 50 PNPYGLEPPSREDVSSTPTSMTHDARSSRPSKKRRSYSGDLMDTF 94

[Close]
BLAST of Chy8G151820 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 9.46e-15
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 13  PNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTFHTVCKEA 64
           PNPHGL+P SGEDMSSTPTSM HD  SS+ SKKR+ YS DLMDTF    +E 
Sbjct: 91  PNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSYSEDLMDTFRASMRET 142

[Close]
BLAST of Chy8G151820 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 9.63e-15
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 13  PNPHGLKPLSGEDMSSTPTSMTHDARSSRLSKKRQPYSRDLMDTFHTVCKEA 64
           PNPHGL+P SGEDMSSTPTSM HD  SS+ SKKR+ YS DLMDTF    +E 
Sbjct: 92  PNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSYSEDLMDTFRASMRET 143

The following BLAST results are available for this feature:
BLAST of Chy8G151820 vs.
Match NameE-valueIdentityDescription
BLAST of Chy8G151820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T5903.0e-1388.89Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C7T42.8e-1174.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VE443.7e-1175.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DTL06.3e-1182.22Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7VGQ01.1e-1070.59Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Chy8G151820 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038163.18.57e-1988.89retrotransposon protein [Cucumis melo var. makuwa] >TYK31532.1 retrotransposon p... [more]
KAA0051721.14.82e-1570.59uncharacterized protein E6C27_scaffold60G001070 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0067269.16.91e-1580.00uncharacterized protein E6C27_scaffold418G00890 [Cucumis melo var. makuwa][more]
XP_008460440.19.46e-1569.23PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo][more]
KAA0067273.19.63e-1569.23retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Chy8G151820 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G151820.1Chy8G151820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding