Chy8G150500 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G150500
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	exosome complex component RRP43
Location	chrH08: 10939592 .. 10956651 (+)
RNA-Seq Expression	Chy8G150500
Synteny	Chy8G150500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGCTACACGAACGCTGCGGGAATACACCCCCACCTCGCCACTCCCTCTCTCTCACGCCAACTCTCCCTCCTCGCCCTCCGCTGCTCGCAGCCGCTCTTCCTCCACCCCTCGCCACCGAAGCCCCGCCGCCTCCATCCGCCGGTGAGAGAGCTTCTCTATCGTCTCTCTCTCAGAACTTTTCTTTGCACAATTTCGCCACCGTTGCATCGCCAACAGCCGAGCGCCACCGCTCCGACCTATATGGAATGACCTTTTTTTTCTCTTTTTCAAATCATAACTGGTTTGCAATTTATGTAAAACAGATAACAGTTCAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCTGAATCAATACGTCCTGATGGAAGATCACTGGGAAAAGCTAGAGACACAACCATTGCTCTTGGTTAGTTCAGGTTTTGATTTTCAATGATTTGTCATTTCTTACCATTTCCAGCTTTTGTTTATCATTTCGAGTTTGCTTCATCGATTTTGACACTTTAAACTGAATTTGGATATCGACTATTCTTCTAGGACCAGTATCTTCTGCAAACGGGTCAGCCCTGGCTAAGATTGGTTCGACGGTGAGTACCTCCACACTTGACCTTATCATATGTGCTAGGGTTTTGTGACGGTTTGTTCTTAATTTGATATAGTGCAGACAATATTGGCTGCTATCAAAATGGAAGTAATGATACCTTCTGTTGAGTCACCGGATGAGGGTTGCATAGGTTGGCCACTGTCAATTGCTAAAGATTTTTGGTCATTGTTCATCATAATCTTTATGATAACATCCTATATATCTTGGTGATTTGGAGTCTATCTTTTCCAGCTCTTGATTTCCACATGCCTCCAGTATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGGTACCATTTCACATTTTTTTGCAATTTTGCTTTGACACATTGCAATTTGCAGCTGATATTCTTCGAGCAAATGTGGATGCCAATCAAGCGTTAAACAATATTTTGAATGGCAGTGAAATGTTTGAGATGGCTTTCTCACTTTAAATTTAGAGAAAAGAGAGTTTTCATACGAACCCTCACAGTAATCACTTTTAAACACTTGCAAATGATAACTAAATAAGAGGTTATGGGTCCAATACATGGTGGCCACCTACCTGGGAGATAATTTCCTATGTATTTCCTCGACACCCAAATGTTCTAATGTCAGGTGGGTTGTCCTATGAGACTAGTCGAGGTGCGTGCAAGCTGACCTGGACACTCACGGTCATTAAAAAAGGAGATAAACATGCTAGGCTCCTATTACGTTTTACATACAGTAGGAGAAATAAAAATATTAATGCCACACGTGGGAATGTTGGAGGAAACGGAAATAAAAATATTATTGCCACACGTGGGAGTGATGGAGAAAACAGAAGAGAAGAGGACCACGCTGGTGGGGCCCATTAGTTTGTTAGAAAAACAGAATAAAAAGAAAAGAAGGAGGAGTGAGGAGGCATCGAAAATTTTGGGAAGAAGAAGAAGTGAGGCTGCATTTCCTCTTCACAGAGAAGGAGGAGCAGATGGTCCAGGTTCCTTATTGTTCTTGTTTTCTTTAATCTCGAATTAGTGTTGGAGTTGACTGTGAAGTCTGTTCTTAGTTGATAGTGAATATTATTAGATCGTAATTCTGTTGAGTTTGTATTCATGATTCCATTGTCTTAGAATCACGATTGTTATTTCTTCTATATTTGATCTCTTATAATATAATACACAAGATACTTCTGTGGTATCTTTACAGAAAGCCTACAATTTGTGGATGATAATCAGTTTGTGCCACCCTTTGGGTGTTGTGAGATGAGAGGAATCAAAGGGTTTTTAGGGGTGTCGAGCGGGAGAGCGGTGAAATCTGGTCTGTTATTCATTTTCACGTTTCTCATTGGGCTTCAATTTTGAAGACTTTTTGTAATTATCCTTTTGACGTGATTTTGTATAGTTAGATTCTCCTTGTCTTTTGTTGGTTTGGTTTTTTTATTTTTTGTATGCCCAAGTATTCCTTCATTTTTCTCAATGAAAGTTATTCTTGTCAAAGTAAGAAAAAATAATCACTTTTAAACACAACAACAAGATTTATATCCAAAGAATCTTGGCAAATCTTGAGGGAACTTCGAACATGATCTGCACTACAAGATAGAGTGAGTGGGCAGATTATAACAGAACAACTAACCCCAATAACCCAGAAAATTATTAAATAATTAAATAAATATAAAGCACAAAGCTGGGGGATGAAACACTGTTGTTATAGTTGATTGAATGATGCCATCTGATGGCATGACGTTTGATCTAATGAAGCTCGTGTAACATTACCATTTGAGGGTAAGATTCTAACATTCTCTATGAAGTGGGCTCTCTTGGCCCAAACTTGGAAATAACTTGGGGCAAATCCTACTTTTAAGGGGTGTTTAGGGTAAGGAGTGGAATAATGAGGACTAAGGAGTTATGAAGTCTAGGAAGCAGTGAACTTTTGGGAACCACAATGTAATGAGTTGTTAAGATATAAAATTGATGTTTCTAGTAGTGGGACCTACCAACTCCTTGGGCCAAACTTAGATTGGAGTTTACAACTAATTCTACCCCACGACTCCTTTGGCCAAACACTCCTTTGGGGCTGTTTGGAGAGTTGGAATGTATCAGGATTTATGGGAATTGAGGAATGTTGGAAATCAAGAGTAATCGAAGACGAAAAGGAAATGAGATCGTGGAGTATGAAAACAATGAGAAAGAGTATTGAATTGAAAACTGTCGGAACATAGTGATTTTTGTATCATAAACCCATCCCATTGTAGGCCACAAAACACCCCTTTAAAGACTTTTAGAATCCAATCATACATCAATTTATGTGAAGTACTTCAAAATGGACGAATTTACCTCTTAAATATGATCTCTTGTTCGGTAACTTTGTTTTGTGAATTTATTCCCTACATCATGTGTCTTTTCATAATGCCTTCAATATTGCTAATATTCTATAAAAAATCATCAGACTTTATTTGGACAGTGATGATTGGGAAAAGGCAACCATTTGTCAAATTGGAAAGTAACTTGCCTCCCTTTTGCCCTTGGTGGCCTGTGGATTTGAAGCTGGAGAAGCTGAAATGTTTACCGCATGACTAAGTACCGAGAGGGAGGCTCTTTGTGACAAATTGTGGTGAGCAAGCATGACCTTCATAATTGGGGTTGAAAGAAAAGTGATTGTGTTAGGTACCTAAATAAGAATATTAGTATGTTAGTATTAAGGGGTATAGTGGTCATTAGATGGAAAGTTGGTAATTGGAATGTATAAACAGAAAGAGGGTGAGTGAGTGTAGGTTAGGCTATTTTGTGACGTGAAGGGCTTGGGTGAGAGCATTCAAAAGCGAGGTTCCAAGTTCCTCTATACTTGGGTTATCATGTAGTTCTTTAATTCTCAATATATTTTAGATCTTGATTCTGGTTGGAAGTATCCTAACAAATTGGTATCAGAGCAACAACCTGGGAAAGAGGAAAAATGGTGCAAAAGTGGATGAAAGAATGATAAATGGGATCGATCTAGAACTTGTTGGAACTAACAATGCACAACAAAGGAAATTTGAAAGTTACTGATCGATCCTCACACATTTGGATCAACATTAGGGGACAAGTGGAGTGAAGGAAAGAAGGATGACGAAGCATCGCGAGAAACTCCAATATTGGTTGAAGAAGTGTGAAAAACACAGACAAATAATGTTGGACACACTCAAAGCAAGTTTTCAAAGATAGATAAGAACAAGATAAAAGGAAGGTAGGAGAAATCATAAAAGAATTGAGGAAAGAAAAATATCCACAAAGAAGTGCAAATTCAGTCAGAGGGAGATCAAGATCTTATTGAAGTTGAAGGGACGAAGATTCGAGCATGTTCACACGATCAAAAAGAGGGAGGGAAAGGAACGGTAGGGTGTTTTAGAGGGAGGTAAAGGGACCTTTGGGAGATCAAGATCTTATTGCCTGCAAGGGAATCGTGAATAGAACCCTAAAACTTACTTTACTGGTGCTTAGGAGATATGGTGGTTGGTGTTGAAAGAGTTTGGGCTGTTCTGGTATTTTTCTAAAGCATACGCTCCCACTTTTTGTCAACTGCTTTATAAAGGTCCTTTTAAGATGCAAGGCAAAATTTTCATGGAGGTGGTGAAAGCTTGTAGAAAAATAGTCTTGAAAGAGAGAAGAGGCTTTCTGAAGGCACAAGAGAAAAAATAAGTGATCTGTGGGAGATTTTGCAGGCAAAGACGAAATCTTTGGGAGGATTGCTGGACGGGGAGGAGCCTCTTTGCATCTTGTTTCTGCTGATGCATTGCCTCTCGTTTAAGAAGTTACACCCTGTAGTCTCTATGTTGCCATACTCCATCTCTTTTGGTTTCCGAAGACCTTGGACAAATTGAGGGGTGATGGACATGACAAATCTTCTTTCCCTTCAAGATAAAGTTTATAGTTCCTGGGAGACGGGATGTTAGGTTTTGGGCCTAGGGGCTTCTCTTGTTATTCTCTCTTTCATCTTTTTTCTTTCCTTTCTCTTCTTATTAACCTTTCTCCTACTATTGTCGACCCTATATTTTACTCTCTATGGAAGATTAAAATCCCAAAGAAGGTTATGATTTTTTTGTGGCAGATTTTACATGGAGAATCAATAGACTCAATACCATTTTTTTTATGAAACAATTTACATTGAGAAAAAAATGAAAGAATACGAAGGAATTAAAAAAAACCAGCCCAACAATCAATACCATGGATTGCATTCAAAGACATTCTTCTCTAGCTTTGTTACTGCAATAGTGCATTTTTGGTAGCAGTCACAAGGACCTTGACCATCTTTTTTGGGGTTATCAGTTTGCTCACTTTCTTTGGAGTCACTGCTTGAGATCTTTAGGGCCCTTTAAGGTTTGTTGGGTGTGGCATAGAGACGGCAGTACTTAGAAGAGGAAGTGTTCTCGAAGGAGAAGGTTTCAGAATTGTGACAGGGCACCTTTTTACCATCATGTGGGAGGATTTGGAGGGAGAATAATAATAGAATTTACAAAGAGAGGTAGAAAGATTGTGTGACGATGTTTGGCAGTTGGCTTGGTTTAACACAATTATGGGCATCTGTTACTAAATCTTTTTATAATTATGAACTTGTACGTTTCAATTGGAATTCGTTTTGGTAGCGTGCATTGGGCCCCTTCCTTTTTGTTGGGCTTGTTTCTTTTGTATGATCTTGTATATTCTTTCATTGTTTGAATGAAAGCGTGGTTTCATTTCTTCAAAAAAATTTTTTGGGTGATTTTCGATGTTGATTGTTCTGGTATTCTGGATTAAAACTCTCTGATTGTTATCCTCCTTTTGGGTAGAACTATTGGAAGGATTTTCTGTAACCTTCGTTATTGTAGTTTGGGAAATGTCTAAGTTCTCTATTTTGAATTTTCTTCGAAAATTAAACTATTGCAAAACTATTCTGCTTGCGATGTTGTGTTTCTCGTTACTTCATAAGTGAAGTAAACTCTGATAGAAGGAATGCAATACATTTTTTTTGGTTTCTGATCTCTTATCCTTGGTCAATTTTCTTTGAATCTAACTGACTAATCAAGATGCTGATGTGAATTCTTCAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGTATGCTTTAAATTCATGCATTGTCAATATATATATTTTTATTCTAGCAGTATCTTGGAGTTTGAAGTGAGGTTCCTTCACCAATATATCGTTATACTTTGTTTCTAAATTTTTTTCTTGCATCATCCTCATTTGTATTGGACATTTTCTCTCTATAGCTTGATTTTTAGCCAGAATGCCAGTTTATTATTGCAGTTAATTGTTTTAGATGAGATAGCAACTTGACATGTGTTCCGCAGGATATTTACTGTTTGGACGCTGATGGTTCTCTTTTTGATGCTGCACTTCTTTCTGCAGCAGCTGCATTTTCTCATTGTGAGGTTTCAGGCTCTCAACTTGTTCCCAACATGATATATTTCTGTGTAATTTGGTAGATGTTATGCTTATGGCAGTAATGTCAAGTATGGTGGGATAGGACATTTTGTCCTCCGTTAACGCTAAGAATAGTTTTTCAGATTATAGATTGTTACTTTATGCTTTTAATCTTTTACATTTCTGATTTTTTTCCCTCTTTAGATTCCTTTTGTTGTTATCAAAATTTATAGGGACACTTATGGCCCGTAACATTTGTGTTTCTCGTTTCCTGTTTCTTATTTTTTAAGAACTAGAAACAGAAATATGTTTGGTAACTATTTTTGTCTCTTGTTTCTTAAAAAACAGAAACAAAAAAACAAAAGCTTGTTTGGTAACCTTTTCTTGTTTGTTGTATCTCATGGCGACCACCCCAAAAACCCACTTTGGCAACCATACCCCATTTTAACCGATTTCAAATGTACAAAAAATAAAAAATTCATAACTAGAATAATATATAAACATGCATATTGCAAAATTTGAAATTTAAACTTCAAAAAGAAAATAATTGCAGAAATATTAATTAAAAACTAAAATATAAGAATACATATTAAAAAGGAAAAAAAAAAAAAAAAAGAAGAAAAAATTGCAAATTGTTAGACTTGAACCCATGACCTGCGATATTACAATAAAGCTAAATGAATATATTGGTAAACAAATATTATACTGTGAAATTTTAAACAGTTTCAAATGTACTAAAAAAATAAAAAATTAAAGCAATATATTAACATGTCTATTTGTGAAATTTGAATTTCAAAATTTAAAAAAACATATTTAAATATACCAATAGAAATTAAAATAATATATAAATCTAAATATTGAAATTTTAAAATTTAAAGTTAAACCAATATATAAATATTGCAAAATTATGAAATAAAAGGAGGCTTTTGCAAAAATAGCAAAAAAATTTATGATAATAGAGCCCATGTCACAACACTTTCTAAATTTGCAAAAGTAGCAAATTTAAAAGTGATGACCTTCTAATAGTTCTATGATTACCGTCTGATAGCCTATGATTAACATATGATTACCGTCTAATAGCCGTTGGATATCCCTAGTTTTGTCATATTCGCAAGATGTAAAAAATTGGTGCCATGAGCTGTTTTTTTTCTAAATGTTTTTGTCATTTGATGCAATTTTCCATAAAAGAATTTTTTTTTTTAAAAAAAGAAAGAAACAATTAATTGTTACGAAAGAAAAAGAAAAAAGAACAATCAGGAAAAAATTAATAATAAAAAAAAATACACACTTATATAGTAGAAACGAAACAAGGAGAAACTAATTTCCATAGTTCCTCAAATTTGGCCTAAATTTTAGAAGTGTTATTTAAAATTTGGAAATGAGAAACAGGAATGGTTTTCAAACAATTCAATTTCTTAAAAAATGTGAAACAGAAACAGAAAATAGAAAACGGAAACGTTATCAAATGGGCGTTTTAGTAATCATGTTCTGAAGTAAACTGCCATGATATCAAAAGGAGGCCATTTAATGCTCTATGTAATTGGGTGCTTTCTTGCATTTCATTATATTATATTCCTCTTTTCCTTTTGCTTTCACGAGTGGGCTAGGATTTGGAACGTATGATGAGAAACTTTTTTGGGAAGGGTTTGAGATTTGTAAAATCAACCATTTGGTTAGATGGAACTTTGTGTCACTAAATCTCAAGAAAATATGAGAGAGATTTAGGCATTTGGAGCTTTATTACAAAGAAATATCACAACTCTTGTCAAGTGGGGTCACCTAGGATCCCTTGTTCACTGTTGTTTAGTTTGTACGGACTTATCGTATTTTGAGATTTACTGTCTTTTCATTATATGTTTCTGTTTTAAAAAAAGAGAACTCTTGGTTAGTGGGTTGGAGATTATAAATGAGCCTCACTCCAGAGAAAGGGGGAGTGTTAGTAATGGGTCAAATTCGTTTGGTTGGCCTACGGCTGAAAGAAATTGGATGAGTCTTTAGAGCCCTTGGATTGGTATTTCTAGACTTTCGAAGCCAGTGAATTCTTTTGCTACTTACAAATTGGAACATGTTATGTGTATTTTCTTTTTGCATGATCATTGGGTTGGTGTTACTCCTTTAATGCTTAGCATTCCTTGATTAGTTGCTGCTATTAATTCACTTAATGGTTTGGGTTTTGAATTTTGGGATGTTTCCCACCATTCTTGGAGCATTGTTTTCAGAAGATTGTGGAAGGATGATGAAATTATAGATTTTCAAAACCTTTTGAAGCGCCTTTCAAGTTGGTTTTCATGATTATTGGATTTGGAGCTTAAATCCATCTGGTACCTTACTGTGAAATCTCTATCTATGCTTTTAGTGACCTTTTCTCCTTTACAAAGTAGATTTTTGTGGTTTTATGGAAATCCAAATATCCCAAGGGAATAAATATCCTCATATGGATTATGCTATTTGGCAATTTTCTTCATTGCTTCATCAAAAGAAGCTTCCCAAATCATCTCTCATGCTTTTGGTTTGTCCTATATGTTGTGTGGCCTGTGGAGGGCAATTTTCTTAACCATGTGTTTGTAGCTACTCCTGGTTTTTTTGGTCCAAGCGAGTTACTTTATTCAAGGTTATGTTCTCTAATTCTTGGCTTCAAAGTCAAAATTATTATTAATGCTTTGAAGGCTCTCCTATCTGATTAAGACTGGAAAAAAATTAGAGAATTCTTTTAAAGCAAACATCTTCCTTTTCGTCTGATTACTGGATTGGAAATGATCCCCTCAAATGAAAATTTCCCTAATTGTTTGCCATTGCCAAATCTACAGATGCTTCAATTGCAAAGGTTTGGAGTCATGAAAACAATTCTTGGTCTTGGCTTTTGTGCTTCAGAAGTCACGTTAAAGATAAGAAATCACTGAAGGGACTTCCTTCATTCAGCTCACTTCTAGTATACAGCTAACACCATGGAATAATTCATGGATTTTGAATCTTGATAACAGTGGCAAATTGACTGTTTAATCATTGATAGCTCAGTTGTCAAATGGTTTCCTTTCAATTGAAGGATATCTTTAATCGATTGTATAATCTGACCGCTCCAACATTGATAGATCTGGTGGTGATTAAGGAGGAAGTAGAGAAGGATGGTCGCTTGAGAGAAATAATGGCTGAATTAGAGAAGAGTGAAGGAGTGGGTAACTACTTTATGCAACACATAATGCTAATATGCAAAGGAAGACTGGTAATTTCGAAAAATTCAACTATAATACCTACTATACTACACATATCACGATTTTGTATTTTGAGGACATTCAGGGTTCTTGAGAACTTACAAAAGACTGATTGGAGAGTTGTATTGGGAAGGGATGAAGCCGGATGTCTAGAAATATTGTGAAGAATGTCTAGTGTGTCAACGCAACAAGTCATTGGCATTATCTCCTGCAGGTTTGTTCCTACCACAGGAGATCCCTAATAACATATGGAGTGACATCTCAATGAATTTCATTGAAGGGTTACCTAAGGCTACTGGTTTTGAAGTAATATTAGTTGTGGTAGATCGGTTGAGTAAATACGCTCATTTCTTGGCCTTAGAACATCCATATACATCTATGACAATGGCCGACTTGTTTGTGAAAGAGATTGTGAGACTGCATGGCCACCCCAACTCTATTGTTTCTAACAGAGACAAGGTGTTTCTGAGTAATTTTTGGAATGAAATATTCAGGCTGGCTGGAACAAAATTGAACCAAAGCTCTGCATATTATCCATAGACAGATGGACAGACGGAAGTGGTAAACAGTGGAGTGGAGATATATTTGCGTTGTTTATGTGAAGAAAGACCAAAGGAATGGGTGAAGTGGCTACACTGGACAGAATACTACAATATCACATATCAGAGATCATCAGGAGTCACTCCTTCTCAGGTTGTCTTTCGTCGCTTGCCAACTCCACTGATCTATTATGGAGACAGGGAAACACCCAATTCTCTGCTTGATGAACAAATGAAAGAGAGGGATGTAGATGGTGTGAACCAAAGAGTCTTTTGTTGTTTGTATGAATATTCTACCTCTCAAATGTGAGAGGAGATACTTCATTTATAGGGAAAATAGTTGGTTACATAGTAACTAACTAGGTAGTTAACTAACAATGAATTAAAAATATAACAGAAGATAACTAATAGTGAATTAAGGCAGAAGCTAAAGACAGTTTACATCATTCCACCCCCCTAACATCAAACTTGTCCCGAGTTTATTATGAAAGCTGGAATTCATCTGGTGCATTGTAGCTTCTAAGGTCTGTTATATTGAAGATAGGATTGATGTTAAACCCGTGAGGCAGTTCAATTTTGTAAGCATTTTGCTCATATTTATCAAGTATTCGACATGGGCCAATCTGTTTGTCTTTCAGCTTTCCACAGGTTCCAATGGGGAACCTCTTCTTCTTCAAATGTGCCATTGCAAGATCTCCAACTTGGAAATGTACTTCCCTTCTCTTCTTATTCTTCTCTTCTTTGTAAGACTCGGTAGTCATAGTGATGTGGTCACTTTTGTGTGAAGTTTCTGTTTTCTTTCAGCCAACTTTTCAGCTTCTTCTTGGATTTCTACTTCTTTAGGAAGGCTAGTTAGGTCGAATGTCAACCTTGGTGCCTTGGTGTACACGATCTCGAAGGGGCATTTGCCCGTAGTTCTATTCATCATATTGTTAAAAGCAAATTCAGCTTGTGGTAGAACCATGTCCCATTGTCTAGGGTGGTTTCCACTAAGGCAGCGAATTAGATTTCCCAAGGACTGGTTAGTTACCTCAGTTTGTCCATCTGTTTGTGGATGAGCAGTGGTACTAAACTTCAAGGTGGTGTCAAGCTTCTTCCATAATGTCTTCCAAAAATGGCTAAGGAATTTAGTATCTCGATCAAAAACTATTGTTTTTGGGATTGCCATGTAGTCTAACAATCTCTCTAAAGAAGAGTGGCAATGTGCACCGCGTCTGTGATTTTTTTACAAGGCAAGAAATGAGGCATCTTGCTGAATCTATCCACCACAACCATGACCGAGTCGAATCCCCTTTGAGTCTTAGGTAGACCCAATACGAAATCAATTGGCAAATCCTCCCATATGTTCTTAGGAATCGATAGAGGAGTGTAGAGACCAACATTAGATGAAGATCCTTTTGCTTTTCGGCAAATAGGACATCTTTTCACAAAGTTATTGTCTCTTCTAGCTTGAGGCCAACAAAACCTCTTGATGACAATCTGAAAAGTCTTTTCTTGATCGAAGTGTCCAGCTAGGCCTCTTAAATGAGCTTCTTTTATTAGGGCTTCCCTTAAGAAGTATGGGGAATGCACAATTGATCTCCCTTGAGAGAAAACCTTCCACCGAATGATAATCTATATCATGGATATGCGCAGTACAATGACTCCAAATCTCACCAAAGTCTTTATCATTCTCAAATAGCTTTGGAAGATGGTTAAAGGCTATAATTTTAGCTGAGAGCGCAGTTAGGAGAGTCCCTTTTCTGCTGAAGGCATCAACAACGCTGTTTTCTTTGTCCGCTTGATGCTTGATTAAGAAATCAAATCTTTGAATATAAGATACCCATCTAGCATGCATCTTGTTAATGTTTTTTTGGGCTTGGAGATACTTCAAGGAGAAATGATCAGTGAGCAGCACAAACTCCTTGGATAATAAGTAGTGCTCCCACTGTTTTAAGGCCCTAACAAGTGCATAAAGTTCTTGCTCATACGTGCTCCAGTCTTGCCTAGAAGGACTCAATTTTTCACTAAAGGATTCTACCGGATGACCTCCTTGGAGAAGGACAGCACCAATTCCCACTCCACTGGCGTCTACTGCCACTTCAAAAGGGCTGTCAGACTCCGGTAATTTGAGGACTGGTTGGCTGGCAAGCTTTCTTTCTATGGAGTCAAAAACTGTGTTGCTGTTTTTCTTCACAATAAAAGGCTTCATTTTTCAAACAATTAGTTATAGAAACTGTTATAGAACTAAAGTTCTTGATAAACTTCCTGTAAAAAGAAGCCAGCCCCATAAAGGCTTGAATCTCCTTTACTGATTTAGTAATAGACCATTTAGTTACAGCTTCGACCTTGCTTTCAACCATCTTCACTTGATTTTCAGATATAATAAAGCCTAGGAAAGATATTTCTTCAGTGCAAAAAATACATTTCTTCAAATTAATGAACAACATACCCCTTTGAAGGGCTTCAAAAACTAGCTTTAGGTGTTGCATATGGTCATGTTCGTTCTTGCTATAGATTAAGATATCATCAAAGTAGACTACCACGAATTTGTTCAAGAATAAATGTAACACTTGGTGTATCAACCACATAAAGGTACTTGGGGCATTTGACAAGCCAAAGGGCATCAGTAACCATTTGAATAACCCCTCATTAGTCTTGAAGGCCATCTTCCACTCATCTCCTGGCCTTAATTCTAATTTGATGATATCCGCTGCTTAGGTCTACCTTTGAAAAAACAAGAGTTCCTCCAAGTTGATCAAGGAGATCATTAATTCTTGGAATAGGGAAGTGATACTTGACCGTGATTTTGTTGATGGCTTGGCTATCTGCACACATCCTCCAGCTGCCATCCTTTGGAGTTAATAGAGCTGGTACAACACAAGGGTTGATACTTGGCTGAATATGCCCTTTTTTCAACAAATCTTCAATGTGCTAGTGTAAGAACTCATACTCCTCAGGACTTATTCTGTAATGAGGAAGGTTGGGAAGAGATGAGTCGGGTATCAAATCAGTAATGTGCTGAATGTCACGAAGAGGAGGCAATTCAGAGGGCTCCTCCATTATAGGTTGAAATTGGCTTAATGTTGGAAATTTCTGTAGTATGAGGGCCTGCACTAACAAGTCCCAAAATATCAGATTCTCTGTTTTGTAGAAATTTCTTTCCACTTACAGTGATGAAAAAATGACTTTCAGCTTTCTTTTGATTGACTCCTTCCTCATTCTTCTTGCTTAGGGGCATCAATACAATCTTCTTGTTCATCCATTGGAACTCATAGGTGTTTTCTCTCCTCTTATGAATAGCTTGAATATCATATTGCCACGGTCTCCCTAGCAAAATATGACAAACGTCCATGTCTAGAACGTCGCATACAATCTGATCTTTGTAAGTCCCTCCAATGGATAAAGGAATCGAGCAAATCTCGTTGATTTGGGCATCTCCACCTTTCTTGATCCACCTAATCTTGTAAGGACTTAAATGAGGTTCTGTTTTCAGCTTAGTGCAGCCACAAGCTTCTTGGATACCAAAATTTTCACTGTTGCCGCTATCAATGATCCCACTTCTCACTTTGCCTTAGATGGTACATTGGGTATTGAAAAGGCTATGCCTTTGTTGGTGAGAGGTGTCACTTTTTGGAGTAATTAAGACTCTTAGCAGCACACAAGATAGCCTCTCTCCATCATCGGGTTCTAATACTTATTCTTCTTGAGAGAAATCCTCTTCTTGCTCTTCAATATAATCTTCATCTTCCTCAAGAATAGCCACTATCTTTCTTTAAGGGCAAGCACTTGAGAGATGGCCGGTTTGACCACAGTGGAAACACTTGCTTAAATTCGGCCTTTGATAGACATTTTCTGCTTGTTACTTGGGGACTAAATCAGCCTTCTTCCCATTTGTCTCATTAGTTTTATCCTTCTCTTGATCTTTATTACGAGTCATAGAGGATTGTGTTGCAGCCGGTTTGGAATTAATGTTCCATGGATCCCTTCTTGTATTCTTCTTCAAATTCAACTCAATAATTTCTTCAACGGACTCTGCATAGGTAATAGCATCGGCAAGATTTAAAAAAAGGTTGTAACTTTACCTTTTCTTTAATGTCAAACCTTAATCCTCCTACAAACCGGGCAATAAGTTGTTGCTTATTCTCCATTAGATTGGTTCTTACACCCAACCGGTGAAATTCCTCTATATAAACAGCAACTGTTCTTGCTCTTTGCCGGCAATTATGGTACTGATTATAAAAAGTTTCCTCATAATTGGGAGGAAGGAAACAAGGAAAAGTGTCTTAATTAATTTATTCATTTTCTCCCAAGGTCTTCCCATTCTTTCGCCTATTAACCTCGAGTTGTTCCCACCAAGCCGATGCTCCAGCCTTCAGCTTTAATGCTACTGAATGTTCTTTCTTCACCTCAGGAGTATTCATATAATTGAAATTTTTTTCAGTATTCTTCAACCAATTAAGAAAAATCTTAATATTACGTTTACCATCATAGCTCGGAAGATCAATTTTCATCTTGTATTCTGCTGGTTCTCTCCTTTCATCAAACTGAGGTTGAAATCTTCTATTCTTGTTAAAAAATGGCCTTTCTTGCAGGTCATCATCGGTAGAACTCCAATCTTGAAGTTCTTGATAATAATCTTGGTTTCTTGGACTAGGTTCTTGATATTCTTGGACTGGTCTCCTTTCTTGAGCCCCAAATCTTCTTTCTTGATGATTTCGTTCAACCCTATAAATTCCAGCACCACAGATGCCATGCTGCCCCCAGTCACGAACAAGTTCTTGATCTTCTCGATGAACATTTTGAGGAGGTGCCAATATCTTTAGTCTTTACAAAACCTCTTGAAGTGTAACTTCAATTCTTTCCACAAAAGCTTCCACGGACAGCAAGCGTCTCGAGGTAGTTCTTGGAGAGAGGACGGGTGTTTCATTCACCTCTTGGTTTTGAGCAGATTGCTCAGCCGCCGGCGGTTGATTTTGCCGGACAGCCACAGGTCTCGAGAGCTTATGGTGTTTTGATACCAATTGGTGTGAACCAAAGACTTGTTTTTTGTATGAATATTCTGCCTCTCAATTTCAGAGAGGAGGTGCTTTATTTACAGGGAAAATAGTTGGTTACATAGTAACTAACTTGGTAGAATTAAAGCATAACAATAAAATATAACAAAAGCTAACTAACAGTGAATCAAGGCCGAAGCTAAAGACAGTTGACATTTGTAGAACTAGGTGCTTTGAAAGAGCATGTCAAAATCGCCCAAGAGAAAATGAAAATGTATGCCGGTTTGAAAAGAAGATACGTCGAGTTTCAAGGAGAAATGGTCTTTCTGAAAATCCGTCCTAGCCTTCTAGTTAACCTTGTATTTGTATCTGTATATATATATACATACACATGTATTAACGATTTTCCCCCTCTATAGTGTTCCGATGTTTAGAGTGTGACTTCCACCCAACTGGATGAGACGTAATGGAATGAACCGGGCTCCATGATTTACATTGGAATATTATACGAGCATATGCATAATCCGTATGGCGTTAGCTCAATTGGAGTCTTAAGTTAACCCTTTGGTTTTGTATGAATATTTTATCCTCCCTTCAGTAATTTTCTTTGGTTAATCAAGGAGAAGAAAAAATTTCAACTCGAAGTTGTAAGGTATTATCTTCTGTTGATCCTATGTTTTATGAAACATGCCAATGATCAATGGTTATTTTATTATGTGAAAAATCTAATAATCTCTTTAAAAGCTGAAAAATGTTAATGAAATTTCTTTTCCATCTTGTTTGGTTGGTAGGTTGAACTACTTTAAAACGATTAGTACCCTTTTTCTTTGTTGAGCCATATTTTAAACTCCTTCCTGGTTTATATTTTTAGTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTGTCTGTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAATAAAGAGAACAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACGTGCCTACTCCACAAGAAGTACATCTTGGCCGATCCTACTGCAGAGGAGGAGTCCGTCATGGAAACTATTGTAACTGTGGTTTTGGATTCATCTGGTCAACTTGTTTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCTTATACATCAGCTGTTCAGGTTGGTCTTTCCTTTCTCCGACAACTTTATTGATGGATTGGTTCCGGATTTTGTCATTCTTCACACTTTCCCTGTCTCTTAAGTTTGGATTTTCAAGAACAATCATTTAGGGCTCGTTTAGTAATTAATTGGTTTTTGAAAATTAAACCTATTTTGTATCAATTTCTTACCATGGTTTCATATTTCTTGAGTAAAAGAGTGAATTTTGAACCAAATTTAAAAAACAAGTACAAGTTTTTAAATATTTTTTTAGTTTTTAAAACTTAATTTGGCTTTTGGAAACGTTGGTAGAAAGTAGATAAAAAAGCAAGAAATTTAGAACTGAAAGGGGTGTTTATAAGGTTAATAAACTAAAAACCAGGGTACCAAAGAGGACATTTTTAAGTGTTTTTAATTTTTTAAAAGTATCATAGAAGATTTTAAAAATGCTTGAGTCCATCTCTAATTTGTACTTGTCAGTTTACTCAGCAAAGGAACTCTAAAAATAAGAATTGACTTGATAGTTATATTGTTATTATAATCATCATCAATTTTCCAATATATAACTTTTTTTTAATATAAAAAATACCATCCATAAGCAAAAAGTTCTCTTTTGCTTGTCTTGCTTTAGGATCCACTTTAATTCTTATAAACTAATGTTTGAATTTGGTTAAGGATGTGTTTGAGAGTGATTTTGGAATGAGACTTTTGTCAAGTTTTCAGTCATTCAAGTTTGTTTGTTTTTTTTTAATATATAAAATGTATAAAATCAAACATGAAATTGATTACGAATAATGAAAAAGTTGTGTTTGTGAGTGATTTTGAACCCATCAAAAATCATTTTAACAATTTAAAAGGCTCTCAAACATGCTCTATCTAATAACTAGAATATCATAGTTGTGATTTACTTGTCAAAGTTACGGTTTAAACGACAAGTCATTCCATATGCTCTAATCTTTGTCCGATGGCGTGGTTGCAGGATTGCATTGCATTGACCAGACAAAGATCGAAAGAACTACAGATAATTTTAGATGAAGCAATTTCTGGTATGGAAGTCGACTAA

mRNA sequence

TTTTGCTACACGAACGCTGCGGGAATACACCCCCACCTCGCCACTCCCTCTCTCTCACGCCAACTCTCCCTCCTCGCCCTCCGCTGCTCGCAGCCGCTCTTCCTCCACCCCTCGCCACCGAAGCCCCGCCGCCTCCATCCGCCGATAACAGTTCAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCTGAATCAATACGTCCTGATGGAAGATCACTGGGAAAAGCTAGAGACACAACCATTGCTCTTGGACCAGTATCTTCTGCAAACGGGTCAGCCCTGGCTAAGATTGGTTCGACGACAATATTGGCTGCTATCAAAATGGAAGTAATGATACCTTCTGTTGAGTCACCGGATGAGGGTTGCATAGCTCTTGATTTCCACATGCCTCCAGTATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGATATTTACTGTTTGGACGCTGATGGTTCTCTTTTTGATGCTGCACTTCTTTCTGCAGCAGCTGCATTTTCTCATTTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTGTCTGTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAATAAAGAGAACAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACGTGCCTACTCCACAAGAAGTACATCTTGGCCGATCCTACTGCAGAGGAGGAGTCCGTCATGGAAACTATTGTAACTGTGGTTTTGGATTCATCTGGTCAACTTGTTTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCTTATACATCAGCTGTTCAGGATTGCATTGCATTGACCAGACAAAGATCGAAAGAACTACAGATAATTTTAGATGAAGCAATTTCTGGTATGGAAGTCGACTAA

Coding sequence (CDS)

TTTTGCTACACGAACGCTGCGGGAATACACCCCCACCTCGCCACTCCCTCTCTCTCACGCCAACTCTCCCTCCTCGCCCTCCGCTGCTCGCAGCCGCTCTTCCTCCACCCCTCGCCACCGAAGCCCCGCCGCCTCCATCCGCCGATAACAGTTCAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTGCTGAATCAATACGTCCTGATGGAAGATCACTGGGAAAAGCTAGAGACACAACCATTGCTCTTGGACCAGTATCTTCTGCAAACGGGTCAGCCCTGGCTAAGATTGGTTCGACGACAATATTGGCTGCTATCAAAATGGAAGTAATGATACCTTCTGTTGAGTCACCGGATGAGGGTTGCATAGCTCTTGATTTCCACATGCCTCCAGTATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCTTACTTGGATATTTACTGTTTGGACGCTGATGGTTCTCTTTTTGATGCTGCACTTCTTTCTGCAGCAGCTGCATTTTCTCATTTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGAAAAGTAGTATTTGTCTGTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAACCTGTCAATAAAGAGAACAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACGTGCCTACTCCACAAGAAGTACATCTTGGCCGATCCTACTGCAGAGGAGGAGTCCGTCATGGAAACTATTGTAACTGTGGTTTTGGATTCATCTGGTCAACTTGTTTCCTTCTACAAGCCGGGTGGATCCGTTCTTGCTTATACATCAGCTGTTCAGGATTGCATTGCATTGACCAGACAAAGATCGAAAGAACTACAGATAATTTTAGATGAAGCAATTTCTGGTATGGAAGTCGACTAA

Protein sequence

FCYTNAAGIHPHLATPSLSRQLSLLALRCSQPLFLHPSPPKPRRLHPPITVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGMEVD*

Homology

[Close]

BLAST of Chy8G150500 vs. ExPASy Swiss-Prot
Match: Q9D753 (Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.6e-47
Identity = 103/282 (36.52%), Postives = 163/282 (57.80%), Query Frame = 0


Query: 73  FRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTILAAIKM 132
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 133 EVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 192
           E   P V++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +L
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124

Query: 193 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVCEEEG 252
            +  GK AW+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V     
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----- 184

Query: 253 GENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQL 312
             N +K    K    ++ N +  S   +     ++ DPT EEE +    +TVV D  G+L
Sbjct: 185 --NLKK----KSYLNVRTNPVATSF-AVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKL 244

Query: 313 VSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGM 355
              +KPGGS L   + +QDC++    R KE+  +LDE I  M
Sbjct: 245 CCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 273

[Close]

BLAST of Chy8G150500 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.6e-47
Identity = 100/283 (35.34%), Postives = 166/283 (58.66%), Query Frame = 0


Query: 73  FRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTILAAIKM 132
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 133 EVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 192
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 193 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVCEEEG 252
            +  GK  W+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V     
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----- 184

Query: 253 GENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQL 312
             N +K    K    ++ + +  S   +     ++ DPT EEE +    +T+V+D  G+L
Sbjct: 185 --NLKK----KSYLNIRTHPVATSF-AVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKL 244

Query: 313 VSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGME 356
              +KPGGS L   + +QDC++    R KE++ ++DE I  M+
Sbjct: 245 CCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274

[Close]

BLAST of Chy8G150500 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-44
Identity = 98/284 (34.51%), Postives = 164/284 (57.75%), Query Frame = 0


Query: 73  FRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTILAAIKM 132
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 133 EVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 192
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 193 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVCEEEG 252
            +  GK AW+ Y D+ CL+ DG++ DA   +  AA  ++Q+P V +N++  +  V     
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEV----- 184

Query: 253 GENFEKEPVNKENRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSGQ 312
             N +K+        L + + P + +  +     ++ DPT EEE +    +TVV+D  G+
Sbjct: 185 --NLKKKSC------LNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGR 244

Query: 313 LVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGME 356
           L   +KPGGS L   + +QDC++    R KE++ ++DE    M+
Sbjct: 245 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVFKSMK 274

[Close]

BLAST of Chy8G150500 vs. ExPASy Swiss-Prot
Match: Q10205 (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp43 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.4e-33
Identity = 85/267 (31.84%), Postives = 146/267 (54.68%), Query Frame = 0


Query: 73  FRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTILAAIKM 132
           F+++ P Q+    L + +R DGRS+ + R+  I    +S+ANGSA+ + G    +  IK 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 133 EVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 192
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ L
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136

Query: 193 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVCEEEG 252
            + + KAAW+ Y DI CL+ DGS FD A  +  AA   +++P    ++D + V +C    
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERV-IC---- 196

Query: 253 GENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQL 312
                    +   R ++L++   S +  +    +LADPT EEE +    +T++L+SS  +
Sbjct: 197 --------ASTLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKNI 256

Query: 313 VSFYKPGGSVLAYTSAVQDCIALTRQR 340
           V   K GG+ +     ++ CI + R +
Sbjct: 257 VKIIKLGGTHI-QPLLLKKCIEVARSK 269

[Close]

BLAST of Chy8G150500 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.0e-33
Identity = 83/255 (32.55%), Postives = 143/255 (56.08%), Query Frame = 0


Query: 91  RPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALD 150
           R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +A++
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 151 FHMPPVCSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCL 210
             + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+ L
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142

Query: 211 DADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKL 270
           D DG+LFDA+++ + +A S  ++P   + DD               E E + ++   L +
Sbjct: 143 DHDGNLFDASMIGSVSALSITEVPKAEVVDD---------------EVEVMEEDTEPLAI 202

Query: 271 NSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS-AV 330
           N  P S+T     +Y+L DP  EEE +M+T +TV +  SG++ +  K  G +  +    +
Sbjct: 203 NDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK--GELGDFPEHLL 260

Query: 331 QDCIALTRQRSKELQ 345
           +D I L  ++++E++
Sbjct: 263 EDAIDLATKKAEEVR 260

[Close]

BLAST of Chy8G150500 vs. ExPASy TrEMBL
Match: A0A1S3CD66 (exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 583.2 bits (1502), Expect = 7.5e-163
Identity = 300/309 (97.09%), Postives = 305/309 (98.71%), Query Frame = 0


Query: 49  ITVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALG 108
           I VQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGR+LGKARDTTIALG
Sbjct: 8   IIVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALG 67

Query: 109 PVSSANGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAE 168
           PVSSANGSALAKIGSTT+LAAIKMEVM PSVESPDEGCIALDFHMPPVCSPIVRPGRPAE
Sbjct: 68  PVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAE 127

Query: 169 AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF 228
           AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF
Sbjct: 128 AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF 187

Query: 229 SHLQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILA 288
           SHLQIPVVALNDDG+VVFV EEEGGENFEKEPVNKE RKLKLNS+PFSLTCLLHKKYILA
Sbjct: 188 SHLQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILA 247

Query: 289 DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD 348
           DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD
Sbjct: 248 DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD 307

Query: 349 EAISGMEVD 358
           EAISGME+D
Sbjct: 308 EAISGMEID 316

[Close]

BLAST of Chy8G150500 vs. ExPASy TrEMBL
Match: A0A1S3CEE1 (exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 9.2e-161
Identity = 296/304 (97.37%), Postives = 301/304 (99.01%), Query Frame = 0


Query: 54  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSA 113
           MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGR+LGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 114 NGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 173
           NGSALAKIGSTT+LAAIKMEVM PSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 174 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 233
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 234 PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 293
           PVVALNDDG+VVFV EEEGGENFEKEPVNKE RKLKLNS+PFSLTCLLHKKYILADPTAE
Sbjct: 181 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 240

Query: 294 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 353
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 300

Query: 354 MEVD 358
           ME+D
Sbjct: 301 MEID 304

[Close]

BLAST of Chy8G150500 vs. ExPASy TrEMBL
Match: A0A6J1ESF5 (exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 6.2e-157
Identity = 286/304 (94.08%), Postives = 298/304 (98.03%), Query Frame = 0


Query: 54  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSA 113
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGR+LGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 114 NGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 173
           NGSALAK+GSTT+LAAIKMEVM PS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 174 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 233
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 234 PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 293
           P VALNDDGKVVFV EEEGGENFEKE VNKE RKLKLNS+PFSLTCLLHK YILADPTAE
Sbjct: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 294 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 353
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 354 MEVD 358
           ME+D
Sbjct: 301 MEID 304

[Close]

BLAST of Chy8G150500 vs. ExPASy TrEMBL
Match: A0A6J1HVL5 (exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 4.0e-156
Identity = 285/304 (93.75%), Postives = 298/304 (98.03%), Query Frame = 0


Query: 54  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSA 113
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGR+LGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 114 NGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 173
           NGSALAK+GSTT+LAAIKMEVM PS+ESPDEGCIA+DFHMP +CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPVI 120

Query: 174 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 233
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 234 PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 293
           PVVALNDDGKVVFV EE+GGENFEKE VNKE RKLKLNS+PFSLTCLLHK YILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 294 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 353
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 354 MEVD 358
           ME+D
Sbjct: 301 MEID 304

[Close]

BLAST of Chy8G150500 vs. ExPASy TrEMBL
Match: A0A6J1DFM7 (exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 PE=4 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.5e-155
Identity = 282/304 (92.76%), Postives = 297/304 (97.70%), Query Frame = 0


Query: 54  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSA 113
           MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGR+LGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 114 NGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 173
           NGSALAKIGSTT+LAAIKMEVM PS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 174 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 233
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 234 PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 293
           PVVALNDDGKVVFV EEEGGENFEKEPVNKE RKLKL+SIPFSLTC+LHK +ILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240

Query: 294 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 353
           EES+METIVTVVLD SGQLVSFYKPGGSVLA+TSAVQDC+ALTRQR KELQ+ILDEAISG
Sbjct: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300

Query: 354 MEVD 358
           ME+D
Sbjct: 301 MEID 304

[Close]

BLAST of Chy8G150500 vs. NCBI nr
Match: XP_004149399.1 (exosome complex component RRP43 isoform X1 [Cucumis sativus] >XP_031739665.1 exosome complex component RRP43 isoform X1 [Cucumis sativus] >KAE8649355.1 hypothetical protein Csa_019145 [Cucumis sativus])

HSP 1 Score: 579 bits (1493), Expect = 4.35e-207
Identity = 300/304 (98.68%), Postives = 302/304 (99.34%), Query Frame = 0


Query: 54  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSA 113
           MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHL ESIRPDGRSLGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 60

Query: 114 NGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 173
           NGSALAKIGSTT+LAAIKMEVM PSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 174 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 233
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 234 PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 293
           PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE
Sbjct: 181 PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 240

Query: 294 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 353
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 300

Query: 354 MEVD 357
           ME+D
Sbjct: 301 MEID 304

[Close]

BLAST of Chy8G150500 vs. NCBI nr
Match: XP_008460772.1 (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 578 bits (1491), Expect = 1.37e-206
Identity = 300/309 (97.09%), Postives = 305/309 (98.71%), Query Frame = 0


Query: 49  ITVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALG 108
           I VQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGR+LGKARDTTIALG
Sbjct: 8   IIVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALG 67

Query: 109 PVSSANGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAE 168
           PVSSANGSALAKIGSTT+LAAIKMEVM PSVESPDEGCIALDFHMPPVCSPIVRPGRPAE
Sbjct: 68  PVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAE 127

Query: 169 AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF 228
           AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF
Sbjct: 128 AAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAF 187

Query: 229 SHLQIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILA 288
           SHLQIPVVALNDDG+VVFV EEEGGENFEKEPVNKE RKLKLNS+PFSLTCLLHKKYILA
Sbjct: 188 SHLQIPVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILA 247

Query: 289 DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD 348
           DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD
Sbjct: 248 DPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILD 307

Query: 349 EAISGMEVD 357
           EAISGME+D
Sbjct: 308 EAISGMEID 316

[Close]

BLAST of Chy8G150500 vs. NCBI nr
Match: XP_008460773.1 (PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_008460774.1 PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo])

HSP 1 Score: 572 bits (1474), Expect = 3.41e-204
Identity = 296/304 (97.37%), Postives = 301/304 (99.01%), Query Frame = 0


Query: 54  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSA 113
           MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGR+LGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 114 NGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 173
           NGSALAKIGSTT+LAAIKMEVM PSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 174 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 233
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 234 PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 293
           PVVALNDDG+VVFV EEEGGENFEKEPVNKE RKLKLNS+PFSLTCLLHKKYILADPTAE
Sbjct: 181 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 240

Query: 294 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 353
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 300

Query: 354 MEVD 357
           ME+D
Sbjct: 301 MEID 304

[Close]

BLAST of Chy8G150500 vs. NCBI nr
Match: XP_038877146.1 (exosome complex component RRP43 isoform X2 [Benincasa hispida])

HSP 1 Score: 563 bits (1452), Expect = 7.67e-201
Identity = 287/304 (94.41%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 54  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSA 113
           MGLPNAASGDLSS+MEVDAFRRLFPIQFYERHLAESIRPDGR LGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFYERHLAESIRPDGRGLGKARDTTIALGPVSSA 60

Query: 114 NGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 173
           NGSALAKIGSTT+LAAIKMEVM P +ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPFIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 174 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 233
           SKQLSDTISSSGMIDLRELS+VKGKAAWMAYLD+YCLDADGSLFDAALLSAAAAFSHL+I
Sbjct: 121 SKQLSDTISSSGMIDLRELSIVKGKAAWMAYLDVYCLDADGSLFDAALLSAAAAFSHLRI 180

Query: 234 PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 293
           PVVALNDDGKV+FV EEEGGENFEKEPVNKE RKLKLNSIPFSLTCLLHKKYILADPTAE
Sbjct: 181 PVVALNDDGKVIFVSEEEGGENFEKEPVNKERRKLKLNSIPFSLTCLLHKKYILADPTAE 240

Query: 294 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 353
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 354 MEVD 357
           ME+D
Sbjct: 301 MEID 304

[Close]

BLAST of Chy8G150500 vs. NCBI nr
Match: KAG7033523.1 (Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 561 bits (1446), Expect = 6.29e-200
Identity = 287/304 (94.41%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 54  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSA 113
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGR+LGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 114 NGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 173
           NGSALAK+GSTT+LAAIKMEVM PS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 174 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 233
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 234 PVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAE 293
           PVVALNDDGKVVFV EEEGGENFEKE VNKE RKLKLNS+PFSLTCLLHK YILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEAVNKERRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 294 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 353
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 354 MEVD 357
           ME+D
Sbjct: 301 MEID 304

[Close]

BLAST of Chy8G150500 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 434.5 bits (1116), Expect = 8.3e-122
Identity = 220/307 (71.66%), Postives = 266/307 (86.64%), Query Frame = 0


Query: 54  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRSLGKARDTTIALGPVSSA 113
           MG+P+AA  DLS++MEVDAFRR+FP++F+ERHL+ES+RPDGR LGKARDT + LG VS+A
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTA 60

Query: 114 NGSALAKIGSTTILAAIKMEVMIPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 173
           +GSALAKIGSTT+LAAI+MEVM PS +SPDEGCIA++FHMPP+CSP VRPGRPAEAAPVI
Sbjct: 61  DGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVI 120

Query: 174 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 233
           SK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+LQI
Sbjct: 121 SKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQI 180

Query: 234 PVVALNDDGKVVFVCEEEGGEN---FEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADP 293
           P+VALND+G++V V  E+  +N    EKE VNKE RKL L +IPFSLTC+LHK YILADP
Sbjct: 181 PIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADP 240

Query: 294 TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEA 353
           T EEES+M+T+VTVVLDSS Q+VSFYK GG+ LAY+SA++ C+ L R+R+KEL+ IL E 
Sbjct: 241 TTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQILGE- 300

Query: 354 ISGMEVD 358
              M++D
Sbjct: 301 ---MDID 302

[Close]

BLAST of Chy8G150500 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-22
Identity = 83/280 (29.64%), Postives = 134/280 (47.86%), Query Frame = 0


Query: 81  FYERHLAESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTILAAIKMEVMIPSVE 140
           F +  +A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 141 SPDEGCIALDFHMPPVCSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 200
            PD+G +A+     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 201 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVCEEEGGEN 260
           +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV    E    E 
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSAEVADDEQ 189

Query: 261 FEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSF 320
            E +  ++E  +   +S+P  +T      + + D TAEEES M + V++ ++ +G +   
Sbjct: 190 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 249

Query: 321 YKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGME 356
            K  GS L   S + D I++ +  ++ L   LD  IS  E
Sbjct: 250 TKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280

[Close]

BLAST of Chy8G150500 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-22
Identity = 83/280 (29.64%), Postives = 134/280 (47.86%), Query Frame = 0


Query: 81  FYERHLAESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTILAAIKMEVMIPSVE 140
           F +  +A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 141 SPDEGCIALDFHMPPVCSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 200
            PD+G +A+     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 201 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVCEEEGGEN 260
           +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV    E    E 
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSAEVADDEQ 189

Query: 261 FEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSF 320
            E +  ++E  +   +S+P  +T      + + D TAEEES M + V++ ++ +G +   
Sbjct: 190 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 249

Query: 321 YKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGME 356
            K  GS L   S + D I++ +  ++ L   LD  IS  E
Sbjct: 250 TKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280

The following BLAST results are available for this feature:

BLAST of Chy8G150500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9D753	6.6e-47	36.52	Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1	[more]
Q96B26	8.6e-47	35.34	Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1	[more]
Q2KHU3	2.3e-44	34.51	Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1	[more]
Q10205	5.4e-33	31.84	Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q8TYC2	7.0e-33	32.55	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of Chy8G150500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CD66	7.5e-163	97.09	exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A1S3CEE1	9.2e-161	97.37	exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A6J1ESF5	6.2e-157	94.08	exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE...	[more]
A0A6J1HVL5	4.0e-156	93.75	exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4...	[more]
A0A6J1DFM7	1.5e-155	92.76	exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 P...	[more]

BLAST of Chy8G150500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149399.1	4.35e-207	98.68	exosome complex component RRP43 isoform X1 [Cucumis sativus] >XP_031739665.1 exo...	[more]
XP_008460772.1	1.37e-206	97.09	PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]	[more]
XP_008460773.1	3.41e-204	97.37	PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_0084607...	[more]
XP_038877146.1	7.67e-201	94.41	exosome complex component RRP43 isoform X2 [Benincasa hispida]	[more]
KAG7033523.1	6.29e-200	94.41	Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Chy8G150500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60080.1	8.3e-122	71.66	3'-5'-exoribonuclease family protein	[more]
AT3G07750.1	3.4e-22	29.64	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	3.4e-22	29.64	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 101..234 e-value: 1.2E-21 score: 77.5
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 69..356 e-value: 7.5E-82 score: 276.8
None	No IPR available	PANTHER	PTHR11097:SF28	SUBFAMILY NOT NAMED	coord: 63..357
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 63..357
None	No IPR available	CDD	cd11369	RNase_PH_RRP43	coord: 74..347 e-value: 2.56644E-113 score: 328.362
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 268..351
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 71..296

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G150500.1	Chy8G150500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)