Chy8G148850 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G148850
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH08: 6515241 .. 6515453 (+)
RNA-Seq Expression	Chy8G148850
Synteny	Chy8G148850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAAAAGGGGAACCAAGAGCACGACTGTAGGCGGCGGAGGAAGTGGCGGAAGAAGCACAGGCAGCAGCACAAGAAGGCACACTATCCAAACTAACAAAGTCGCCTTCGAATACCCGAAACCGCCGCCACCGGCCATTATTATCTCAGGCAATATACTCATGGATTGTGGCCGTGCCGGCGTGGAAAAGGGCGGTGCTATGAGTTGGTGA

mRNA sequence

ATGATTAAAAGGGGAACCAAGAGCACGACTGTAGGCGGCGGAGGAAGTGGCGGAAGAAGCACAGGCAGCAGCACAAGAAGGCACACTATCCAAACTAACAAAGTCGCCTTCGAATACCCGAAACCGCCGCCACCGGCCATTATTATCTCAGGCAATATACTCATGGATTGTGGCCGTGCCGGCGTGGAAAAGGGCGGTGCTATGAGTTGGTGA

Coding sequence (CDS)

ATGATTAAAAGGGGAACCAAGAGCACGACTGTAGGCGGCGGAGGAAGTGGCGGAAGAAGCACAGGCAGCAGCACAAGAAGGCACACTATCCAAACTAACAAAGTCGCCTTCGAATACCCGAAACCGCCGCCACCGGCCATTATTATCTCAGGCAATATACTCATGGATTGTGGCCGTGCCGGCGTGGAAAAGGGCGGTGCTATGAGTTGGTGA

Protein sequence

MIKRGTKSTTVGGGGSGGRSTGSSTRRHTIQTNKVAFEYPKPPPPAIIISGNILMDCGRAGVEKGGAMSW*

Homology

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BLAST of Chy8G148850 vs. NCBI nr
Match: KAG6603315.1 (hypothetical protein SDJN03_03924, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 1.57e-12
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 3  KRGTKSTTVGGGGSGGRSTGSSTRRHTIQTNKVAFEYPKPPPPAIIISGNIL 54
          K GTKSTTVGGGGSGGRS GS TRR T+QTNK   E+ K   PAII+SGN++
Sbjct: 19 KMGTKSTTVGGGGSGGRSRGS-TRRQTVQTNKATLEHQKKQQPAIILSGNLV 69

The following BLAST results are available for this feature:

BLAST of Chy8G148850 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G148850 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G148850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603315.1	1.57e-12	69.23	hypothetical protein SDJN03_03924, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy8G148850 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G148850.1	Chy8G148850.1	mRNA