Chy8G148790 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G148790
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	auxin-regulated gene involved in organ size
Location	chrH08: 6409356 .. 6409806 (-)
RNA-Seq Expression	Chy8G148790
Synteny	Chy8G148790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATACAAAACCTGTCTCTTCAACCACCATCTCCACCTCTTTCTGCTACAAAAATTCCCCTCCTCTGCCCTCATCGGCCACCGATGCCACCACGAGAACCCGTTTGCCTCCTTCGGCATCTTTAGACTCCTCTCACCGTGGTAGCACTAACCATCAAAGACTTATTAGATGCGACTTTAGAACTAAGATGGCAAAAGCAAGTACAAATTTGCACCAGAGGAAATAATTAAGGCCTGAGCTAGGGCTACTTTTCCTTTCTTGATGGTCCGCTACTCCAACATGTTTTTGTTGTTTCTTTGGACACTATCCCTTTTGGTGTTGCCTCTACTTCTTCCACCGCTCCCGCCGCCGCCTATGGTGTTTCTCTTTGTGCCTCTCGTTATCATGATGCTTCTTATCTTCTTTGCCTTATCGACTTCTCAAGTTCCAACCACTACCGTCGCGTCTGA

mRNA sequence

ATGTATACAAAACCTGTCTCTTCAACCACCATCTCCACCTCTTTCTGCTACAAAAATTCCCCTCCTCTGCCCTCATCGGCCACCGATGCCACCACGAGAACCCGTTTGCCTCCTTCGGCATCTTTAGACTCCTCTCACCGTGAGGAAATAATTAAGGCCTGAGCTAGGGCTACTTTTCCTTTCTTGATGGTCCGCTACTCCAACATGTTTTTGTTGTTTCTTTGGACACTATCCCTTTTGGTGTTGCCTCTACTTCTTCCACCGCTCCCGCCGCCGCCTATGGTGTTTCTCTTTGTGCCTCTCGTTATCATGATGCTTCTTATCTTCTTTGCCTTATCGACTTCTCAAGTTCCAACCACTACCGTCGCGTCTGA

Coding sequence (CDS)

ATGTATACAAAACCTGTCTCTTCAACCACCATCTCCACCTCTTTCTGCTACAAAAATTCCCCTCCTCTGCCCTCATCGGCCACCGATGCCACCACGAGAACCCGTTTGCCTCCTTCGGCATCTTTAGACTCCTCTCACCGTGAGGAAATAATTAAGGCCTGAGCTAGGGCTACTTTTCCTTTCTTGATGGTCCGCTACTCCAACATGTTTTTGTTGTTTCTTTGGACACTATCCCTTTTGGTGTTGCCTCTACTTCTTCCACCGCTCCCGCCGCCGCCTATGGTGTTTCTCTTTGTGCCTCTCGTTATCATGATGCTTCTTATCTTCTTTGCCTTATCGACTTCTCAAGTTCCAACCACTACCGTCGCGTCTGA

Protein sequence

MYTKPVSSTTISTSFCYKNSPPLPSSATDATTRTRLPPSASLDSSHREEIIKA*ARATFPFLMVRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTTTVASX

Homology

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BLAST of Chy8G148790 vs. ExPASy TrEMBL
Match: A0A0A0KYG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G433470 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.4e-49
Identity = 116/124 (93.55%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 1   MYTKPVSSTTISTSFCYKNSPPLPSSATDATTRTRLPPSASLDSSHREEIIKA*ARATFP 60
           MYTKPVSSTTISTSFCYKNSPP PSSA DATTRTRLPPSASLDSS REEI    ARATFP
Sbjct: 1   MYTKPVSSTTISTSFCYKNSPPPPSSAIDATTRTRLPPSASLDSSLREEIRLELARATFP 60

Query: 61  FLMVRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTT 120
           FLM RYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTT
Sbjct: 61  FLMARYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTT 120

Query: 121 TVAS 125
           TVAS
Sbjct: 121 TVAS 124

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BLAST of Chy8G148790 vs. ExPASy TrEMBL
Match: A0A1J6HXM3 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_09277 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-05
Identity = 29/54 (53.70%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 69  MFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTTTV 123
           +F++   T+SLLVLPL+LPPLPPPP++FLF+P+++M+LL+F A + SQ+P   +
Sbjct: 36  IFIMVFLTISLLVLPLVLPPLPPPPLMFLFIPVLLMVLLVFLAFTPSQLPNVAI 89

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BLAST of Chy8G148790 vs. ExPASy TrEMBL
Match: A0A2N9F7M5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 64  VRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVP 119
           VR+  + LL   T+SLLVLPL+LPPLPPPP++ LFVP+++M LL+F AL+ SQVP
Sbjct: 7   VRFITVMLLL--TVSLLVLPLVLPPLPPPPLLLLFVPVLMMSLLVFLALTPSQVP 59

[Close]

BLAST of Chy8G148790 vs. ExPASy TrEMBL
Match: A0A0R0EX55 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G130900 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 67  SNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVP 119
           S MF++ L T++LLVLPL+LPPLPPPPM+F+ VPLVIM+LL+  ALS+   P
Sbjct: 9   STMFMVVL-TIALLVLPLMLPPLPPPPMIFMLVPLVIMLLLVMLALSSKHGP 59

[Close]

BLAST of Chy8G148790 vs. ExPASy TrEMBL
Match: A0A445FG01 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_051348 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 67  SNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVP 119
           S MF++ L T++LLVLPL+LPPLPPPPM+F+ VPLVIM+LL+  ALS+   P
Sbjct: 9   STMFMVVL-TIALLVLPLMLPPLPPPPMIFMLVPLVIMLLLVMLALSSKHGP 59

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BLAST of Chy8G148790 vs. NCBI nr
Match: KGN54720.1 (hypothetical protein Csa_012521 [Cucumis sativus])

HSP 1 Score: 199 bits (506), Expect = 1.75e-63
Identity = 116/124 (93.55%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 1   MYTKPVSSTTISTSFCYKNSPPLPSSATDATTRTRLPPSASLDSSHREEIIKA*ARATFP 60
           MYTKPVSSTTISTSFCYKNSPP PSSA DATTRTRLPPSASLDSS REEI    ARATFP
Sbjct: 1   MYTKPVSSTTISTSFCYKNSPPPPSSAIDATTRTRLPPSASLDSSLREEIRLELARATFP 60

Query: 61  FLMVRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTT 120
           FLM RYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTT
Sbjct: 61  FLMARYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTT 120

Query: 121 TVAS 124
           TVAS
Sbjct: 121 TVAS 124

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BLAST of Chy8G148790 vs. NCBI nr
Match: OIS97059.1 (hypothetical protein A4A49_09277 [Nicotiana attenuata])

HSP 1 Score: 55.8 bits (133), Expect = 2.64e-07
Identity = 29/49 (59.18%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 70  FLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVP 118
           F++   T+SLLVLPL+LPPLPPPP++FLF+P+++M+LL+F A + SQ+P
Sbjct: 37  FIMVFLTISLLVLPLVLPPLPPPPLMFLFIPVLLMVLLVFLAFTPSQLP 85

[Close]

BLAST of Chy8G148790 vs. NCBI nr
Match: KRG95112.1 (hypothetical protein GLYMA_19G130900v4 [Glycine max] >RZB47734.1 hypothetical protein D0Y65_051348 [Glycine soja])

HSP 1 Score: 55.1 bits (131), Expect = 3.18e-07
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 67  SNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVP 118
           S MF++ L T++LLVLPL+LPPLPPPPM+F+ VPLVIM+LL+  ALS+   P
Sbjct: 9   STMFMVVL-TIALLVLPLMLPPLPPPPMIFMLVPLVIMLLLVMLALSSKHGP 59

[Close]

BLAST of Chy8G148790 vs. NCBI nr
Match: CAA2952349.1 (Hypothetical predicted protein [Olea europaea subsp. europaea])

HSP 1 Score: 55.5 bits (132), Expect = 3.81e-07
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 74  LWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTTTV 122
           ++TLSLLVLPL+LPPLPPPP +FL VP++IM +LIF A S SQVP  +V
Sbjct: 39  IFTLSLLVLPLVLPPLPPPPPLFLLVPVLIMAMLIFLAFSPSQVPNVSV 87

[Close]

BLAST of Chy8G148790 vs. NCBI nr
Match: KAG4912900.1 (hypothetical protein JHK86_053333 [Glycine max] >KAG4927789.1 hypothetical protein JHK85_054275 [Glycine max] >KAG5083314.1 hypothetical protein JHK84_053352 [Glycine max] >KAG5086085.1 hypothetical protein JHK82_053482 [Glycine max])

HSP 1 Score: 55.1 bits (131), Expect = 5.01e-07
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 67  SNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVP 118
           S MF++ L T++LLVLPL+LPPLPPPPM+F+ VPLVIM+LL+  ALS+   P
Sbjct: 28  STMFMVVL-TIALLVLPLMLPPLPPPPMIFMLVPLVIMLLLVMLALSSKHGP 78

[Close]

BLAST of Chy8G148790 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 62  LMVRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTTT 121
           L+   S   LLFL +L LL+LP  LPPLPPPP   L +PL++M+LLIF A S S  P+  
Sbjct: 24  LITARSVALLLFL-SLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPSLA 83

Query: 122 V 123
           V
Sbjct: 84  V 83

[Close]

BLAST of Chy8G148790 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 42.7 bits (99), Expect = 2.5e-04
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 56  RATFPFLMVRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTS 115
           R   P       ++FLL   T SLL+LPL+LPPLPPPP + L VP+ IM+LL+  A   S
Sbjct: 57  RMMIPANYFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

The following BLAST results are available for this feature:

BLAST of Chy8G148790 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G148790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYG7	7.4e-49	93.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G433470 PE=4 SV=1	[more]
A0A1J6HXM3	8.6e-05	53.70	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_09277 PE=4 SV=1	[more]
A0A2N9F7M5	1.1e-04	61.82	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1	[more]
A0A0R0EX55	1.5e-04	63.46	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G130900 PE=4 SV=1	[more]
A0A445FG01	1.5e-04	63.46	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_051348 PE=4 SV=1	[more]

BLAST of Chy8G148790 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54720.1	1.75e-63	93.55	hypothetical protein Csa_012521 [Cucumis sativus]	[more]
OIS97059.1	2.64e-07	59.18	hypothetical protein A4A49_09277 [Nicotiana attenuata]	[more]
KRG95112.1	3.18e-07	63.46	hypothetical protein GLYMA_19G130900v4 [Glycine max] >RZB47734.1 hypothetical pr...	[more]
CAA2952349.1	3.81e-07	67.35	Hypothetical predicted protein [Olea europaea subsp. europaea]	[more]
KAG4912900.1	5.01e-07	63.46	hypothetical protein JHK86_053333 [Glycine max] >KAG4927789.1 hypothetical prote...	[more]

BLAST of Chy8G148790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41230.1	1.4e-04	52.46	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]
AT3G59900.1	2.5e-04	48.33	auxin-regulated gene involved in organ size	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..41
None	No IPR available	PANTHER	PTHR38928:SF7	SUBFAMILY NOT NAMED	coord: 62..123
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 62..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G148790.1	Chy8G148790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane