Chy8G148190 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G148190
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	50S ribosomal protein 5, chloroplastic
Location	chrH08: 4945527 .. 4947019 (-)
RNA-Seq Expression	Chy8G148190
Synteny	Chy8G148190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTCCCCGTCGCCGTCATGTTTTCCACCGACTTCTGCCATCCCTAGTATGTCTCTCTTCCTGAACTTTCCTTTCCCTTCCTCTGCTCGACGGGATCGATTGAACGTTTTTGTCTAATTCTTATTTCTATCTACATTTCTCTTTCTACTTCATTGTTTGTTGTACGATTTATTCAAATGGGTAATTTCTTTTTTCTCCAACTCGGAAAACTATGTGGTGCTTGAGAGAATTTTCTTGCTTCCACTCATTTGTCCGTCAGGCATTTTGTCAAACAGTTGGTATCTTTATTTTGAGACCCTCGATTTTTTAAGCTTCTCTTTTGATGTGCACTAGATCTCGCTCTGGCTTGCCTGAATGTGTTTTTGTTCTGTATCTTGTGTTTTATATGCTGATTGCTCTGTTTCTTGTTCATTGTCCTCAATTTCACATATACTTTACAAGTTTCCTTGTCTTGAAATACGGTTGAATTTCATTGAAGAGAGATTATTTTGAGTGAATTTCATGAATATTAATTTGATTCATATAATATCAAATAGGAGAAATTAACATTATCAGGATCCCTAGCCCCCCACGCTGTGATAGATTACATATTAAAAAACGAACTCAATCAAAATTTCTTTAAATAGATTACAGTCTATTTATTCTTTGGTTACATTACAACTAAACAAGCTATTTAAACTTGGGTTATATAAATAAAAGAAAGTATTACAAGCTTCTTGGCGAAACTTTTAAAGTTTGTTTACTAACTAATGGTCTATTAAGTGTTTAATAAGTCTCTAAACTTTTAATATTGTTTATGGTAGATCTCTAGGTTTTAAACAATATCTAGTAGGTCTTAAAATATTAGTCTTAAACTTTTAACTGTCTTTATTTGGATCTGAATTTTTATAGAGATCTCATGTATCAGGTTTACAATCTATTAAACACTCTTTTAAATTAAGGGATCTCTTAGACACAATTCGATAAGCTTAGAGACCAAAATAATACATATTCTTGGCTTTAATTGGAATGATTATTTCCTTGCACTTTATGAATCTGAGTCTAATTTCCATTCCTTTATTGTGGTTTCCATTTCAGGTTCTATGTTGCTCATGAAGCCTATTGGGATTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCATCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACAGGAGAAACTGACAGTGGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGACAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGCTGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

mRNA sequence

ATGGCTTCTTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTCCCCGTCGCCGTCATGTTTTCCACCGACTTCTGCCATCCCTAGTTCTATGTTGCTCATGAAGCCTATTGGGATTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCATCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACAGGAGAAACTGACAGTGGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGACAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGCTGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

Coding sequence (CDS)

ATGGCTTCTTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTCCCCGTCGCCGTCATGTTTTCCACCGACTTCTGCCATCCCTAGTTCTATGTTGCTCATGAAGCCTATTGGGATTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCATCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACAGGAGAAACTGACAGTGGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGACAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGCTGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

Protein sequence

MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV*

Homology

[Close]

BLAST of Chy8G148190 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.8e-16
Identity = 67/141 (47.52%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 17  FSTSP---SPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFVENTASLVVKAASE 76
           F+T+P   S S FP  +A P S +    IG+      G R+   P V+      +  AS 
Sbjct: 9   FTTTPVTSSSSLFPHPTANPISRV---RIGLPTNCLKGFRILT-PIVQKPRKNSIFIASA 68

Query: 77  TDATGETDSGEVQPAAEAKKED-VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQ 136
                   +  V+ +   K+ D V VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLVQ
Sbjct: 69  AAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLVQ 128

Query: 137 KRHLRKKGRWPPSKMKKLKNV 154
           KR LRKKG WPPSKMKKL+ V
Sbjct: 129 KRRLRKKGNWPPSKMKKLEGV 145

[Close]

BLAST of Chy8G148190 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 71/156 (45.51%), Postives = 90/156 (57.69%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFV 60
           MA    +S P  +S    +S S S    + +  S +L +KP  ++ K  N V L  +   
Sbjct: 1   MALLCFNSLPSLSSL---SSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLN 60

Query: 61  ENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQER---LEQKARM 120
            +   +VVKAA+      E +S E      A    VPVDKLPLESK  +    LE + +M
Sbjct: 61  SSHGRIVVKAAASGVDGAEPESKEEPKTVVAA---VPVDKLPLESKEAKEKLLLELRLKM 120

Query: 121 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 121 KLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]

BLAST of Chy8G148190 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 22  SPSCFPPTSAIPSSM----LLMKPIGIQPKHFNGVRLRNH-PFVENTASLVVKAASETDA 81
           S S  PP ++I  S     + ++ + +      G RL  H P +      VV   S   A
Sbjct: 9   SLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVVAMVS---A 68

Query: 82  TGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHL 141
             E  +GE    ++ ++ ++ V  LPLESKLQ +LEQK +MK+AKKIRLRR RL++KR L
Sbjct: 69  AAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMRKRKL 128

Query: 142 RKKGRWPPSKMKKLKNV 154
           RK+G WPPSKMKKLKNV
Sbjct: 129 RKRGAWPPSKMKKLKNV 142

[Close]

BLAST of Chy8G148190 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.5e-70
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFV 60
           MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIG QPKHFNGVRLRNH FV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGETDS +VQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of Chy8G148190 vs. ExPASy TrEMBL
Match: A0A1S3C2X0 (50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.4e-64
Identity = 143/153 (93.46%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFV 60
           MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIG QPK FNGVRLRNHPFV
Sbjct: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60

Query: 61  ENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGE DS EVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of Chy8G148190 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.0e-55
Identity = 128/156 (82.05%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 3   SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNH 62
           +FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+G QPK FNGVRLRN 
Sbjct: 2   AFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRNV 61

Query: 63  PFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
            FVENTASL+VKA SE D TGETDS E QP AEAKKEDVPVDKLPLESKLQERLEQK RM
Sbjct: 62  SFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Chy8G148190 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.1e-53
Identity = 126/158 (79.75%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 3   SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLR 62
           +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP G QPKHFNGVRLR
Sbjct: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLR 61

Query: 63  NHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122
           N  FVENT S +VKAASE DATGETDS E +P AEAKKEDV VDKLPLESKLQERLEQKA
Sbjct: 62  NPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQKA 121

Query: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of Chy8G148190 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.6e-53
Identity = 124/156 (79.49%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 3   SFLLSSNPLSTSFHFST-----SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNH 62
           +FLL SNPLS S H ST     SPSPSCFP   +  +SM LMKP G QPKHFNGVRLRN 
Sbjct: 2   AFLLCSNPLSISLHSSTLSPSPSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRLRNP 61

Query: 63  PFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
            FVENT S +VKAASE D TGETDS E +P+AEAKKEDVPVDKLPLESKLQERLEQKARM
Sbjct: 62  SFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKARM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Chy8G148190 vs. NCBI nr
Match: XP_004144312.1 (50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypothetical protein Csa_012356 [Cucumis sativus])

HSP 1 Score: 271 bits (694), Expect = 3.24e-91
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFV 60
           MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIG QPKHFNGVRLRNH FV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGETDS +VQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of Chy8G148190 vs. NCBI nr
Match: XP_008455762.1 (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo])

HSP 1 Score: 251 bits (642), Expect = 2.56e-83
Identity = 143/153 (93.46%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFV 60
           MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIG QPK FNGVRLRNHPFV
Sbjct: 1   MASFLLCSNPLSTSFHFSTLHP--CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60

Query: 61  ENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGE DS EVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of Chy8G148190 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 227 bits (579), Expect = 1.28e-73
Identity = 134/158 (84.81%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFH---FST--SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLR 60
           MASFLL SNPLSTS H   FS   SPSPSCFP TSA PS MLLMKPIG QPKHFNGVRL 
Sbjct: 1   MASFLLCSNPLSTSLHSFPFSPPPSPSPSCFPATSAAPSPMLLMKPIGFQPKHFNGVRLG 60

Query: 61  NHPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 120
              FVEN ASL+VKAASE DA G+TDS E QP AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 61  KPSFVENMASLIVKAASEIDAMGDTDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKA 120

Query: 121 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153
           RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 158

[Close]

BLAST of Chy8G148190 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 221 bits (562), Expect = 4.82e-71
Identity = 128/155 (82.58%), Postives = 133/155 (85.81%), Query Frame = 0


Query: 4   FLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHP 63
           FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+G QPK FNGVRLRN  
Sbjct: 3   FLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRNVS 62

Query: 64  FVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMK 123
           FVENTASL+VKA SE D TGETDS E QP AEAKKEDVPVDKLPLESKLQERLEQK RMK
Sbjct: 63  FVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRMK 122

Query: 124 LAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153
           LAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 LAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Chy8G148190 vs. NCBI nr
Match: XP_023543496.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218 bits (554), Expect = 8.52e-70
Identity = 127/157 (80.89%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 4   FLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRN 63
           FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP G QPKHFNGVRLRN
Sbjct: 3   FLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLRN 62

Query: 64  HPFVENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQERLEQKAR 123
             FVENT S  VKAASE DATGETDS E +P+AEAKKEDVPVDKLPLESKLQERLEQKAR
Sbjct: 63  PSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKAR 122

Query: 124 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of Chy8G148190 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 71/156 (45.51%), Postives = 90/156 (57.69%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGIQPKHFNGVRLRNHPFV 60
           MA    +S P  +S    +S S S    + +  S +L +KP  ++ K  N V L  +   
Sbjct: 1   MALLCFNSLPSLSSL---SSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLN 60

Query: 61  ENTASLVVKAASETDATGETDSGEVQPAAEAKKEDVPVDKLPLESKLQER---LEQKARM 120
            +   +VVKAA+      E +S E      A    VPVDKLPLESK  +    LE + +M
Sbjct: 61  SSHGRIVVKAAASGVDGAEPESKEEPKTVVAA---VPVDKLPLESKEAKEKLLLELRLKM 120

Query: 121 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 121 KLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

The following BLAST results are available for this feature:

BLAST of Chy8G148190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11891	9.8e-16	47.52	50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV...	[more]
Q9LER7	1.8e-14	45.51	50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ...	[more]
P27684	1.8e-14	44.53	50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]

BLAST of Chy8G148190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3F4	2.5e-70	97.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1	[more]
A0A1S3C2X0	3.4e-64	93.46	50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 P...	[more]
A0A6J1DNT9	5.0e-55	82.05	50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GE62	2.1e-53	79.75	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HS41	3.6e-53	79.49	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Chy8G148190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144312.1	3.24e-91	97.39	50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypot...	[more]
XP_008455762.1	2.56e-83	93.46	PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo]	[more]
XP_038881132.1	1.28e-73	84.81	50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r...	[more]
XP_022154476.1	4.82e-71	82.58	50S ribosomal protein 5, chloroplastic [Momordica charantia]	[more]
XP_023543496.1	8.52e-70	80.89	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy8G148190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56910.1	1.3e-15	45.51	plastid-specific 50S ribosomal protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..153
None	No IPR available	PANTHER	PTHR34678:SF1	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 5..153
IPR040307	50S ribosomal protein 5, chloroplastic	PANTHER	PTHR34678	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 5..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G148190.1	Chy8G148190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome