Chy8G148060 (gene) Cucumber (hystrix) v1

Overview
NameChy8G148060
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH08: 4765475 .. 4765711 (+)
RNA-Seq ExpressionChy8G148060
SyntenyChy8G148060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTATCTAGTGTCAGGTGTTGGCAACGTGGTTATTGGTGGAGATGGTTCATTGGTGGTTGCGATTGCTCTCCAAGCTCCTATTCTTTATACTCTGTTACTTGTGGAAGCTTGGGCTTTATGTGAAAAGGCATGCATTTTGCTTGTCAAATACTACTTCCCTTGGTCACTTTTGGTTTGGATTGTCTTGTTTTCATTCATCTTGTTCAGCGAATATCCTATTCGAATGGGGAAGTAA

mRNA sequence

CGTTATCTAGTGTCAGGTGTTGGCAACGTGGTTATTGGTGGAGATGGTTCATTGGTGGTTGCGATTGCTCTCCAAGCTCCTATTCTTTATACTCTGTTACTTGTGGAAGCTTGGGCTTTATGTGAAAAGGCATGCATTTTGCTTGTCAAATACTACTTCCCTTGGTCACTTTTGGTTTGGATTGTCTTGTTTTCATTCATCTTGTTCAGCGAATATCCTATTCGAATGGGGAAGTAA

Coding sequence (CDS)

CGTTATCTAGTGTCAGGTGTTGGCAACGTGGTTATTGGTGGAGATGGTTCATTGGTGGTTGCGATTGCTCTCCAAGCTCCTATTCTTTATACTCTGTTACTTGTGGAAGCTTGGGCTTTATGTGAAAAGGCATGCATTTTGCTTGTCAAATACTACTTCCCTTGGTCACTTTTGGTTTGGATTGTCTTGTTTTCATTCATCTTGTTCAGCGAATATCCTATTCGAATGGGGAAGTAA

Protein sequence

RYLVSGVGNVVIGGDGSLVVAIALQAPILYTLLLVEAWALCEKACILLVKYYFPWSLLVWIVLFSFILFSEYPIRMGK*
Homology
[Close]
BLAST of Chy8G148060 vs. ExPASy TrEMBL
Match: A0A0A0KYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G416460 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.3e-22
Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = 0 

Query: 4   VSGVGNVVIGGDGSLVVAIALQAPILYTLLLVEAWALCEKACILLVKYYFPWSLLVWIVL 63
           VSGVGN++I G  SLVVAIALQ PILYT LL EA ALCEK CILL  +YFPWSLLVWIVL
Sbjct: 29  VSGVGNMIIDGYASLVVAIALQVPILYTPLLAEACALCEKECILLTNFYFPWSLLVWIVL 88

Query: 64  FSFILFSEYPIRMGK 79
           FSFILF++YPI MGK
Sbjct: 89  FSFILFNDYPILMGK 103

[Close]
BLAST of Chy8G148060 vs. NCBI nr
Match: KGN54650.1 (hypothetical protein Csa_012899 [Cucumis sativus])

HSP 1 Score: 112 bits (279), Expect = 5.51e-30
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0 

Query: 2   YLVSGVGNVVIGGDGSLVVAIALQAPILYTLLLVEAWALCEKACILLVKYYFPWSLLVWI 61
           + VSGVGN++I G  SLVVAIALQ PILYT LL EA ALCEK CILL  +YFPWSLLVWI
Sbjct: 27  HQVSGVGNMIIDGYASLVVAIALQVPILYTPLLAEACALCEKECILLTNFYFPWSLLVWI 86

Query: 62  VLFSFILFSEYPIRMGK 78
           VLFSFILF++YPI MGK
Sbjct: 87  VLFSFILFNDYPILMGK 103

The following BLAST results are available for this feature:
BLAST of Chy8G148060 vs.
Match NameE-valueIdentityDescription
BLAST of Chy8G148060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYC18.3e-2278.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G416460 PE=4 SV=1[more]
BLAST of Chy8G148060 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54650.15.51e-3076.62hypothetical protein Csa_012899 [Cucumis sativus][more]
BLAST of Chy8G148060 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G148060.1Chy8G148060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane