Chy8G148010 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G148010
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	BUD13-like protein
Location	chrH08: 4657757 .. 4657942 (-)
RNA-Seq Expression	Chy8G148010
Synteny	Chy8G148010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGCAATCTGAGATGCCTCTTCTTGATTTAGTAGACAACGAGAAGATGAAGGAATTAGGGTTCATGATTCCTCAGGACATTCCACCTGACAGCTGGCTAAAAAGAGAATTGGATGCTGAACCTAATAGATATGGTAGAAGACCTGGAAGACATTGGGATGGGGTTGATCGTAGTAATGGTTAG

mRNA sequence

AAAAGGCAATCTGAGATGCCTCTTCTTGATTTAGTAGACAACGAGAAGATGAAGGAATTAGGGTTCATGATTCCTCAGGACATTCCACCTGACAGCTGGCTAAAAAGAGAATTGGATGCTGAACCTAATAGATATGGTAGAAGACCTGGAAGACATTGGGATGGGGTTGATCGTAGTAATGGTTAG

Coding sequence (CDS)

AAAAGGCAATCTGAGATGCCTCTTCTTGATTTAGTAGACAACGAGAAGATGAAGGAATTAGGGTTCATGATTCCTCAGGACATTCCACCTGACAGCTGGCTAAAAAGAGAATTGGATGCTGAACCTAATAGATATGGTAGAAGACCTGGAAGACATTGGGATGGGGTTGATCGTAGTAATGGTTAG

Protein sequence

KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSNG*

Homology

[Close]

BLAST of Chy8G148010 vs. ExPASy TrEMBL
Match: A0A1S3CHR8 (BUD13 homolog OS=Cucumis melo OX=3656 GN=LOC103501110 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 53/61 (86.89%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           KRQSEM L DL DNEKMKE GFMIPQDIPP SWLKR LDA PNRYG RPGRHWDGVDRSN
Sbjct: 470 KRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSN 529

Query: 61  G 62
           G
Sbjct: 530 G 530

[Close]

BLAST of Chy8G148010 vs. ExPASy TrEMBL
Match: A0A5A7VKV1 (BUD13-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00590 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 53/61 (86.89%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           KRQSEM L DL DNEKMKE GFMIPQDIPP SWLKR LDA PNRYG RPGRHWDGVDRSN
Sbjct: 470 KRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSN 529

Query: 61  G 62
           G
Sbjct: 530 G 530

[Close]

BLAST of Chy8G148010 vs. ExPASy TrEMBL
Match: A0A0A0LTH5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428990 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 53/61 (86.89%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           KRQSEM L DL DNEKMKE GFMIPQDIPP SWLKR LDA PNRYG RPGRHWDGVDRSN
Sbjct: 469 KRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSN 528

Query: 61  G 62
           G
Sbjct: 529 G 529

[Close]

BLAST of Chy8G148010 vs. ExPASy TrEMBL
Match: A0A6J1KX65 (BUD13 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498375 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 51/61 (83.61%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           KRQSEM L DL D+EKMKE GF+IPQDIPP SWLKR LDA PNRYG RPGRHWDGVDRSN
Sbjct: 473 KRQSEMALPDLGDSEKMKESGFIIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSN 532

Query: 61  G 62
           G
Sbjct: 533 G 533

[Close]

BLAST of Chy8G148010 vs. ExPASy TrEMBL
Match: A0A6J1F993 (BUD13 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443156 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.6e-20
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           K+QSEM L DL D+EKMKE GF+IPQDIPP SWLKR LDA PNRYG RPGRHWDGVDRSN
Sbjct: 474 KKQSEMALPDLGDSEKMKESGFIIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSN 533

Query: 61  G 62
           G
Sbjct: 534 G 534

[Close]

BLAST of Chy8G148010 vs. NCBI nr
Match: XP_023522830.1 (pre-mRNA-splicing factor cwf26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109 bits (273), Expect = 2.36e-29
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
          K+QSEM L DL D+EKMKE GF+IPQDIPP SWLKR LDA PNRYG RPGRHWDGVDRSN
Sbjct: 18 KKQSEMALPDLGDSEKMKESGFIIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSN 77

[Close]

BLAST of Chy8G148010 vs. NCBI nr
Match: XP_011650042.1 (BUD13 homolog [Cucumis sativus] >XP_031737093.1 BUD13 homolog [Cucumis sativus] >XP_031737094.1 BUD13 homolog [Cucumis sativus] >XP_031737095.1 BUD13 homolog [Cucumis sativus] >KGN63326.1 hypothetical protein Csa_021811 [Cucumis sativus])

HSP 1 Score: 114 bits (285), Expect = 8.93e-28
Identity = 53/61 (86.89%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           KRQSEM L DL DNEKMKE GFMIPQDIPP SWLKR LDA PNRYG RPGRHWDGVDRSN
Sbjct: 469 KRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSN 528

[Close]

BLAST of Chy8G148010 vs. NCBI nr
Match: XP_008462822.1 (PREDICTED: BUD13 homolog [Cucumis melo] >XP_008462824.1 PREDICTED: BUD13 homolog [Cucumis melo] >KAA0066385.1 BUD13-like protein [Cucumis melo var. makuwa] >TYK00899.1 BUD13-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 8.97e-28
Identity = 53/61 (86.89%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           KRQSEM L DL DNEKMKE GFMIPQDIPP SWLKR LDA PNRYG RPGRHWDGVDRSN
Sbjct: 470 KRQSEMALPDLGDNEKMKESGFMIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSN 529

[Close]

BLAST of Chy8G148010 vs. NCBI nr
Match: XP_023005354.1 (BUD13 homolog [Cucurbita maxima] >XP_023005355.1 BUD13 homolog [Cucurbita maxima])

HSP 1 Score: 110 bits (276), Expect = 1.60e-26
Identity = 51/61 (83.61%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           KRQSEM L DL D+EKMKE GF+IPQDIPP SWLKR LDA PNRYG RPGRHWDGVDRSN
Sbjct: 473 KRQSEMALPDLGDSEKMKESGFIIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSN 532

[Close]

BLAST of Chy8G148010 vs. NCBI nr
Match: XP_022986527.1 (BUD13 homolog [Cucurbita maxima])

HSP 1 Score: 109 bits (273), Expect = 2.26e-26
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           K+QSEM L DL D+EKMKE GF+IPQDIPP SWLKR LDA PNRYG RPGRHWDGVDRSN
Sbjct: 349 KKQSEMALPDLGDSEKMKESGFIIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSN 408

[Close]

BLAST of Chy8G148010 vs. TAIR 10
Match: AT1G31870.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 13303 Blast hits to 9618 proteins in 489 species: Archae - 8; Bacteria - 444; Metazoa - 7153; Fungi - 2294; Plants - 942; Viruses - 128; Other Eukaryotes - 2334 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 5.6e-18
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           KR+ E  L+DL D+E+MK+ GF+IPQ +P  SWL R L+A  NRYG +PGRHWDGVDRSN
Sbjct: 474 KRKYETTLVDLGDDEEMKKSGFIIPQSVPKHSWLTRRLEAASNRYGIKPGRHWDGVDRSN 533

Query: 61  G 62
           G
Sbjct: 534 G 534

[Close]

BLAST of Chy8G148010 vs. TAIR 10
Match: AT1G31870.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 5.6e-18
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   KRQSEMPLLDLVDNEKMKELGFMIPQDIPPDSWLKRELDAEPNRYGRRPGRHWDGVDRSN 60
           KR+ E  L+DL D+E+MK+ GF+IPQ +P  SWL R L+A  NRYG +PGRHWDGVDRSN
Sbjct: 474 KRKYETTLVDLGDDEEMKKSGFIIPQSVPKHSWLTRRLEAASNRYGIKPGRHWDGVDRSN 533

Query: 61  G 62
           G
Sbjct: 534 G 534

The following BLAST results are available for this feature:

BLAST of Chy8G148010 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G148010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CHR8	1.5e-21	86.89	BUD13 homolog OS=Cucumis melo OX=3656 GN=LOC103501110 PE=3 SV=1	[more]
A0A5A7VKV1	1.5e-21	86.89	BUD13-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G0...	[more]
A0A0A0LTH5	1.5e-21	86.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428990 PE=3 SV=1	[more]
A0A6J1KX65	1.6e-20	83.61	BUD13 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498375 PE=3 SV=1	[more]
A0A6J1F993	3.6e-20	81.97	BUD13 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443156 PE=3 SV=1	[more]

BLAST of Chy8G148010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522830.1	2.36e-29	81.97	pre-mRNA-splicing factor cwf26-like [Cucurbita pepo subsp. pepo]	[more]
XP_011650042.1	8.93e-28	86.89	BUD13 homolog [Cucumis sativus] >XP_031737093.1 BUD13 homolog [Cucumis sativus] ...	[more]
XP_008462822.1	8.97e-28	86.89	PREDICTED: BUD13 homolog [Cucumis melo] >XP_008462824.1 PREDICTED: BUD13 homolog...	[more]
XP_023005354.1	1.60e-26	83.61	BUD13 homolog [Cucurbita maxima] >XP_023005355.1 BUD13 homolog [Cucurbita maxima...	[more]
XP_022986527.1	2.26e-26	81.97	BUD13 homolog [Cucurbita maxima]	[more]

BLAST of Chy8G148010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31870.1	5.6e-18	63.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G31870.2	5.6e-18	63.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018609	Bud13	PFAM	PF09736	Bud13	coord: 34..61 e-value: 1.1E-9 score: 38.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G148010.1	Chy8G148010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0070274	RES complex
cellular_component	GO:0005684	U2-type spliceosomal complex