Chy8G147340 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G147340
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	CACTA en-spm transposon protein
Location	chrH08: 2762286 .. 2763029 (-)
RNA-Seq Expression	Chy8G147340
Synteny	Chy8G147340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTGGCTATCCTGCAGTTATGGTAACCTTTTGTATAGGTTGAACTTAGCTTTCAAATAAAAGAGAGGGATGATTTGCCATAACTTATTCATGGAGTAATTAAGTTTAGGGTTTGATAGGGATTAATAATATATAGAACTAATGATCAAACAGTTTCATGTTTTAGGTGTTTAACGATGGATAAGAGTTGGATGAAACTTAGGAATAAGTTATCGGTTGAGTATAGAGAGGGTGTGTCCCAATTTTTAGAGATTGCCAAGTTGCACGTCGATGCTTACGGACGAATAATGTGTCCATGTAAGAGATGTATGAACTCAAACTGGTACTCATTAGAGGGTGTAGAGCGACATCTATTGACCATCAGAATATCCCCCTCCTATACAAAATGGTTGTATCATGGAGATGTAGTGAACTTACATAGGGGTATTGAAAGGTTTGATGAAGGAACTAGTAGTAACCCTTTTGATGAATGAACTAGTAGTAACCCTTTTGATAAAGGAACTAGTAGTAACCCTATTGATGAAGCAACTATTAGTAATCCTTTTGATGAAGAAGATGAAATGTTTGATATGCTTAATGATTTACAAGCTCCCATTGAAAACGAACGGGAAATAGAAGCTCCAATTGGTGTAGACATAGAAGAAGAAACATCAAACATATTTCATGACTTATTGAATGAAGCTCGTAGTGAGTTATACCCCGGTTGTCCCGAATACTCTTCCCTAAAGTTTTTGGTTAAGATGA

mRNA sequence

TTCTGGCTATCCTGCAGTTATGGTGTTTAACGATGGATAAGAGTTGGATGAAACTTAGGAATAAGTTATCGGTTGAGTATAGAGAGGGTGTGTCCCAATTTTTAGAGATTGCCAAGTTGCACGTCGATGCTTACGGACGAATAATGTGTCCATGTAAGAGATGTATGAACTCAAACTGGTACTCATTAGAGGGTGTAGAGCGACATCTATTGACCATCAGAATATCCCCCTCCTATACAAAATGGTTGTATCATGGAGATTAGTAACCCTTTTGATGAATGAACTAGTAGTAACCCTTTTGATAAAGGAACTAGTAAAGATGAAATGTTTGATATGCTTAATGATTTACAAGCTCCCATTGAAAACGAACGGGAAATAGAAGCTCCAATTGGTGTAGACATAGAAGAAGAAACATCAAACATATTTCATGACTTATTGAATGAAGCTCGTAGTGAGTTATACCCCGGTTGTCCCGAATACTCTTCCCTAAAGTTTTTGGTTAAGATGA

Coding sequence (CDS)

TTCTGGCTATCCTGCAGTTATGGTGTTTAACGATGGATAAGAGTTGGATGAAACTTAGGAATAAGTTATCGGTTGAGTATAGAGAGGGTGTGTCCCAATTTTTAGAGATTGCCAAGTTGCACGTCGATGCTTACGGACGAATAATGTGTCCATGTAAGAGATGTATGAACTCAAACTGGTACTCATTAGAGGGTGTAGAGCGACATCTATTGACCATCAGAATATCCCCCTCCTATACAAAATGGTTGTATCATGGAGATTAGTAACCCTTTTGATGAATGAACTAGTAGTAACCCTTTTGATAAAGGAACTAGTAAAGATGAAATGTTTGATATGCTTAATGATTTACAAGCTCCCATTGAAAACGAACGGGAAATAGAAGCTCCAATTGGTGTAGACATAGAAGAAGAAACATCAAACATATTTCATGACTTATTGAATGAAGCTCGTAGTGAGTTATACCCCGGTTGTCCCGAATACTCTTCCCTAAAGTTTTTGGTTAAGATGA

Protein sequence

FWLSCSYGV*RWIRVG*NLGISYRLSIERVCPNF*RLPSCTSMLTDE*CVHVRDV*TQTGTH*RV*SDIY*PSEYPPPIQNGCIMEISNPFDE*TSSNPFDKGTSKDEMFDMLNDLQAPIENEREIEAPIGVDIEEETSNIFHDLLNEARSELYPGCPEYSSLKFLVKMX

Homology

[Close]

BLAST of Chy8G147340 vs. ExPASy TrEMBL
Match: A0A5D3CIW6 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00980 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.4e-18
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 91  FDE*TSSNPFDKGTS------KDEMFDMLNDLQAPIENEREIE---------APIGVDIE 150
           F+E TSSNPF +GTS      +DEMF MLNDLQAP+E+E EIE           +GVDI+
Sbjct: 249 FEEGTSSNPFGEGTSSRQFNEEDEMFGMLNDLQAPVEHEEEIELCRLEDEMAMNVGVDID 308

Query: 151 EE-TSNIFHDLLNEARSELYPGCPEYSSLKFLVKM 170
           E+ T+NI+ DLLNEAR+ELYPGC E+SSL  LVK+
Sbjct: 309 EDRTNNIYQDLLNEARNELYPGCSEFSSLNLLVKL 343

[Close]

BLAST of Chy8G147340 vs. ExPASy TrEMBL
Match: A0A5D3D5X7 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00580 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.5e-17
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 91  FDE*TSSNPFDKGTS------KDEMFDMLNDLQAPIENEREIE---------APIGVDIE 150
           F+E TSSNPF++GTS      + ++F MLNDLQAPIE+E EIE           +GV+I+
Sbjct: 160 FEEGTSSNPFNEGTSSTQFNEEGDIFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNID 219

Query: 151 EE-TSNIFHDLLNEARSELYPGCPEYSSLKFLVKM 170
           E+ T+NIF DLLN+AR+ELYPGC E+SSL FLVK+
Sbjct: 220 EDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL 254

[Close]

BLAST of Chy8G147340 vs. ExPASy TrEMBL
Match: A0A5A7UMP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001050 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.5e-17
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 91  FDE*TSSNPFDKGTS------KDEMFDMLNDLQAPIENEREIE---------APIGVDIE 150
           F+E TSSNPF++GTS      + ++F MLNDLQAPIE+E EIE           +GV+I+
Sbjct: 86  FEEGTSSNPFNEGTSSTQFNEEGDIFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNID 145

Query: 151 EE-TSNIFHDLLNEARSELYPGCPEYSSLKFLVKM 170
           E+ T+NIF DLLN+AR+ELYPGC E+SSL FLVK+
Sbjct: 146 EDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL 180

[Close]

BLAST of Chy8G147340 vs. ExPASy TrEMBL
Match: A0A5D3CN32 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00140 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.9e-17
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 91  FDE*TSSNPFDKGTS------KDEMFDMLNDLQAPIENEREIE---------APIGVDIE 150
           F+E TSSNPFD+ TS      +D+MF M+NDLQAPIE+E E E           IGVDI+
Sbjct: 777 FEEGTSSNPFDERTSSRQFNEEDDMFSMMNDLQAPIEHEEETEELRLKDEMTRNIGVDID 836

Query: 151 EETSNIFHDLLNEARSELYPGCPEYSSLKFLVKM 170
           E+T+NIF DLLNEA +ELY GC E+SS  FLVK+
Sbjct: 837 EDTTNIFKDLLNEACNELYHGCFEFSSFNFLVKL 870

[Close]

BLAST of Chy8G147340 vs. ExPASy TrEMBL
Match: A0A5A7V8R2 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00160 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.9e-17
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 91  FDE*TSSNPFDKGTS------KDEMFDMLNDLQAPIENEREIE---------APIGVDIE 150
           F+E TSSNPFD+ TS      +D+MF M+NDLQAPIE+E E E           IGVDI+
Sbjct: 711 FEEGTSSNPFDERTSSRQFNEEDDMFSMMNDLQAPIEHEEETEELRLKDEMTRNIGVDID 770

Query: 151 EETSNIFHDLLNEARSELYPGCPEYSSLKFLVKM 170
           E+T+NIF DLLNEA +ELY GC E+SS  FLVK+
Sbjct: 771 EDTTNIFKDLLNEACNELYHGCFEFSSFNFLVKL 804

[Close]

BLAST of Chy8G147340 vs. NCBI nr
Match: TYK11771.1 (uncharacterized protein E5676_scaffold304G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.21e-20
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 91  FDE*TSSNPFDKGTS------KDEMFDMLNDLQAPIENEREIEA---------PIGVDIE 150
           F+E TSSNPF +GTS      +DEMF MLNDLQAP+E+E EIE           +GVDI+
Sbjct: 249 FEEGTSSNPFGEGTSSRQFNEEDEMFGMLNDLQAPVEHEEEIELCRLEDEMAMNVGVDID 308

Query: 151 EE-TSNIFHDLLNEARSELYPGCPEYSSLKFLVKM 169
           E+ T+NI+ DLLNEAR+ELYPGC E+SSL  LVK+
Sbjct: 309 EDRTNNIYQDLLNEARNELYPGCSEFSSLNLLVKL 343

[Close]

BLAST of Chy8G147340 vs. NCBI nr
Match: TYK16767.1 (transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 8.35e-20
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 91  FDE*TSSNPFDKGTSKDEMFDMLNDLQAPIENEREIEAP---------IGVDIEEETSNI 150
           FDE TSS  F +   +D+MF MLNDL+APIE E EIE           IGVD++E+T+NI
Sbjct: 15  FDEGTSSRQFHE---EDDMFGMLNDLEAPIEQEEEIEEGRLEDEMSRNIGVDLDEDTTNI 74

Query: 151 FHDLLNEARSELYPGCPEYSSLKFLVKM 169
           F DLLNE R++LYPGC E+ SL FLVK+
Sbjct: 75  FQDLLNETRNKLYPGCSEFFSLNFLVKL 99

[Close]

BLAST of Chy8G147340 vs. NCBI nr
Match: TYK18968.1 (uncharacterized protein E5676_scaffold418G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.05e-19
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 91  FDE*TSSNPFDKGTS------KDEMFDMLNDLQAPIENEREIEA---------PIGVDIE 150
           F+E TSSNPF++GTS      + ++F MLNDLQAPIE+E EIE           +GV+I+
Sbjct: 160 FEEGTSSNPFNEGTSSTQFNEEGDIFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNID 219

Query: 151 EETSN-IFHDLLNEARSELYPGCPEYSSLKFLVKM 169
           E+T+N IF DLLN+AR+ELYPGC E+SSL FLVK+
Sbjct: 220 EDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL 254

[Close]

BLAST of Chy8G147340 vs. NCBI nr
Match: KAA0063387.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.09e-19
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 82  GCIMEISNPFDE*TSSNPFDKGTS------KDEMFDMLNDLQAPIENEREIEA------- 141
           G +    N F+E TSSNPFD+ TS      +D+MF M+NDLQAPIE+E E E        
Sbjct: 703 GTLRGTKN-FEEGTSSNPFDERTSSRQFNEEDDMFSMMNDLQAPIEHEEETEELRLKDEM 762

Query: 142 --PIGVDIEEETSNIFHDLLNEARSELYPGCPEYSSLKFLVKM 169
              IGVDI+E+T+NIF DLLNEA +ELY GC E+SS  FLVK+
Sbjct: 763 TRNIGVDIDEDTTNIFKDLLNEACNELYHGCFEFSSFNFLVKL 804

[Close]

BLAST of Chy8G147340 vs. NCBI nr
Match: KAA0056368.1 (uncharacterized protein E6C27_scaffold186G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.13e-19
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 91  FDE*TSSNPFDKGTS------KDEMFDMLNDLQAPIENEREIEA---------PIGVDIE 150
           F+E TSSNPF++GTS      + ++F MLNDLQAPIE+E EIE           +GV+I+
Sbjct: 86  FEEGTSSNPFNEGTSSTQFNEEGDIFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNID 145

Query: 151 EETSN-IFHDLLNEARSELYPGCPEYSSLKFLVKM 169
           E+T+N IF DLLN+AR+ELYPGC E+SSL FLVK+
Sbjct: 146 EDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL 180

The following BLAST results are available for this feature:

BLAST of Chy8G147340 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G147340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CIW6	2.4e-18	58.95	DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3D5X7	3.5e-17	56.84	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UMP4	3.5e-17	56.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CN32	5.9e-17	57.45	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7V8R2	5.9e-17	57.45	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Chy8G147340 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11771.1	1.21e-20	58.95	uncharacterized protein E5676_scaffold304G00980 [Cucumis melo var. makuwa]	[more]
TYK16767.1	8.35e-20	56.82	transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo v...	[more]
TYK18968.1	3.05e-19	56.84	uncharacterized protein E5676_scaffold418G00580 [Cucumis melo var. makuwa]	[more]
KAA0063387.1	3.09e-19	54.37	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0056368.1	3.13e-19	56.84	uncharacterized protein E6C27_scaffold186G001050 [Cucumis melo var. makuwa]	[more]

BLAST of Chy8G147340 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G147340.1	Chy8G147340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0005488	binding