Chy8G147240 (gene) Cucumber (hystrix) v1

Overview
NameChy8G147240
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGag/pol protein
LocationchrH08: 2618150 .. 2622454 (-)
RNA-Seq ExpressionChy8G147240
SyntenyChy8G147240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATTAATAAATAAACAATTGCAATAGAGATCTATTCTAGGTTTACTGATTTAAGCGTATAGTAAAATTATGAAAAATAAATATATCAATGTATACTCCTATTAATCGTTCGTTTTCCGGTAGTATCGCCACAAATATTGTTTCATCCTCAATCCGATTTGTGGTTTAAATTAAGAGTGCTTAATTTTTTTTCTCTATATATATAAAGAGTTAATTTTACTCAATCTTCTTTTCTATAAAACCAAGCGGTTAACCATATATAAATTTGAACCATAACAAAAGAAAAAAAAAATAAGAAGAAATTGAAATTGAGAAAAATGAAATCAGTTGTAATTTGCTTGATTATCCTTAGCTTATTTGGTGGAGGATCCACATCAACCCTTAAGGATTCCCCTACGGATACCAACCATGTGCTTGATGCTCGTCAATTTTGCAACCTTGGTTGTGCCGCTTCTCTCTGCAGCAAAATTTCCACCCCGGGAAACCCGAGTGAGTTAATTTCTAGTACTCTTGGACTACCTATTTTATTCTTTTACATTGTTGGACCAAGTTAATATATCTATTTTAATCCTTTAAGTTTTTTGGATTTCTGATGTCTCAATCTAAATTCTATTATGAGGGACCTTTGGTCGGGTTCTTTTCTTCTAGGAGCTTCTATAATATTGTCCCTTTCACATGGTTGTTTTGACTATATCTGTGACGACCCGGACTTTTCGGACTGACCGTCTAAGTCGTCAATTTGACACAAAACCGTTTGTTGACACATAAACATAGCAAAATTTCCGTTGAACCATGAGAAAACGAAAGAAAATTTAATCGGGCCCTATTTCAAAATATGAAATTTTAAAGTACTGTTTACAAAACTTTAACTATTTGTAAATTCAGTTCAACAAAATGTTTATAAAACCGTCAGCGGAAGCAGTATAAAGGACAGTCTTCTATGGCCATTCACGAGTCCTTCTTGTCCCTCGTCGGTCTGCCCCTCGTGTTACCTTTGCCTTAAAAGTTAAACATAAAAAGGGTGAGTATTAATATACTCAGTAAGGGACCCACTACTGGTCCCGTTCGGGGAAAAATAAATTATTAGTATCCTATGGTGTACCCTACACAGTCACAGTCTAGTGCTCCCGAAGGATGCACATATCAGTCTAGTGCTCCCGAAGGATGCACATATAGGGGGTGATCCCGAAGGACACCCGCAGGGTAACTATCCACTAGGAAAACTAATAATTTATCCCCTCAGTCCATTCTATACATCTTAACAGTCAATTTACAACTCAATCAAATGTCCTCATCACGTGAACTTTCCCTTAACCTCAAACAACCTTTTTTATTCCAATTTAACCCAAGGACAGTCGACACATATCGCTACATCAGTCAGCCACATAAATAGCCCAGCAATCACGACATACGTTAGACAACAAGTTCGCATCAATCCAAACATTTAGATAAAATTGTATTCAGTCAACACAATATACATTAACACCTCATGATCGTTATTCCTCCTCAGTATATCAGTATAAATCATACAGCCAATACATCCAAATAATATTTATTGAGTCCAGTAGAAAGTCCCTTACCTTGGCGTTATTCTAAATTCTCGAACGAACTAAATCCAACGAACGAAACCAGGGTATTGGCGAACCAAACTCCAAAAATTCACAAATTTGTTGTGGATTCAAGGGACCCAGCGTTACTTTCAACACCTTCAAAATAAATTAACAATTTAGCCAATCCTTTCAACCATACCGCTTGAACAACCTTGAAACAAATTTCAATCCATATTAAATTCGTTACCAACAAAACCAATTCGACAATTTACCGTAAAACAGAGGCAGCGACACTCCACGGCGCACGGCTGCCGGTCCACGGAAACCCCACGTGTGGGTCGATCGGCGGTCGGCTGAGGGAGGCGTGCGCGGCTCGGATCTTGCGTGAAGACAGCACGACGACGGCTGGAAGATGGAGATCCGCTCGGCGGCTGGCTTTCACGGATGAACCCCGGCGCAGACGGACGGTTGGGCTTCGGCTTCAGGTGAACGGAAAAGGGGCAACGTGGCTCGGGCTTCGTCGGAAAGGCTGGGACGCGCGGCGGTTGGACCTCACGGATGGAACCCGGCGGCTTGGGACTCACGGGTGGCTTCCGCGGAGGCCGAACGGCAGAGGCGACGTCGCAGACGGCTGCGAATGGAGGAGTGGTGCAGCTGGGCAGTTGGACTTCGCCGGTCGGACGGAAGGAGGAGCGGATCTGGGCGGCTGGGCTTCGCGGCTGCGTGCGGTGGGGCTTCGCGAACAGAGGCGCGGCGCGGATGAAATAGTTGTGCGGCTGGCGGCGGCAGCGGCGGTGAGACTGGGCGGGGCTTCGTCGAAACGGAAGGGAGAAGAGGAAAGGAGGGTTGCGGCCGGCGGCTAAGATAAGGGGAAGGAGAAGAAAAAGGAAGAAGAAGAAGGGGGGGGCGTGCGTGAGGGAGAGAGAGGGAGGGAAACTTTTTTTTTTTGTTTGTTTTTTATTAATAATAATAATAATAATATAATAATAATAATAATAATAATAATAATAATTAATAATTAATAATAATAATATTTTTTTTTTATTTTTTTTTTAAGTGCGTTACAAAAACGATCTTTGAGTACATCTAAATGATATTGTCATTACATGTAAACTCTAAATCGATTAAGTAATAACATCTAAACGATCGTGTCGGAAAGACTAAACGTTCGTTTAGTTTAGTAAACAAAATAGGAATAACATTAAAATGATCTCCCAATAATTAATCTACACGATTGTTTAGTTAAATCAAAACAATTAAACCTAAAACTGTAAATGATGTTGTCACTACTTGTAAACGATTTTTTAATAACATGTAAATGATGGAAATGTTGAATTTAAACAAATTACATATAGTGTACTAAAAGCGATCATTTATGTAAGTAAACTATCAAAACTAAACAATCTTCTAAGAAAACCTAAACGAACGTTTATGTTCATTATTTTAAACGATTTTGTACAATATGTATGCGGTGTTGCTATACAAGTTAATCGATCATGTAGTTAATTCAAAACGACTAAATGTTAATTTTCAAAAAGTGTAAAATAGAGAAATATTCAACAATGTTTATACCTTTATTGTAAACGTTATTACATGTAAACTATATATCAAAAAAATGCAATTGTTTGTGGTAGAATCTAGATCTGGAAACTTGTAAAACTCTGGATGTTTTTTAAGCAGAAACTCGGGATTTTTTTAGCAGTCATGTTCTACTAGCAAACCCTTCGTCCAATCCTTTCCATTAGGAGAAGAAAGTCTGGAGTTTCCATCGGATCCTCCGTTCTTAAACCAACCTTCCATTCCCTTTCATATGGATTTGGAAGCTTGTAAATAAATGTTTTCGATGTTGGGGTTTATGTCCTAAAACTCGTAGATTATAAATATAATCCATTTACTCTTATTAATCAAATGTTACTATTATAATAAATGTTACTTATTATATTATTAGTTTTGTCTTAATAACCCAAATCCAATAAACTAACATCCTAAGTTGTTTGATAAGTCTTGAACAATATGTAGAGACATACAGGGATCAATGTTTGAGATCAGCTTAAAGGGACTATAGTATAGGGATAAGGTTGGATACGTTATCCTAGTAACACTATAGATACGACTCACTTAGTATTTGATACAAACGGATTGACCCAACGCGTTCGTGTAGGTGACATGCTAGTGAGGGTATCCTATGCAATGAGTTTGCATAAGACCAAACCACAAAATAGTAACCACTAGATGTTTCTTTGTAACTTAGTGGAGTGTTTTATGAGTTTTCTATTTCATTAGGATGACCTAGGGAACTTAGTCTTAATCCTAAGTGTATTATGAACTCCTGTTCGCCAGAGAATGTCCTTTGATTTGTATAGATGAGAGTGGCCAGATTACCGACTCAATATGCTTATCATTTTGGGAACAAGATCTAGTGGGAAGCTAGGAACATAATTACACAAGATGGTGTTCTCTTAAATGGTGTCTCTAGGTTTTGAACAAAGGGTCCTACCCTCCCTATGGCACGAGAGGGGTTTATGTTTATTGGTTGGACCATAAATGAGTTGTTCATTAAAGGAGCATTGGTATTTAAGGACTAGAGGTAACACAAGGGGTAAAATGGTAATTTGATCCAGTTGGTGTTACGAACACTCGTGAATGACTAACTTACTGTTATTGGTCTATATCTGTTAATACAAAAATATATCTATGGTGAGAAGAGTTCAGCTGTGAGTTTTAGTGGAGTGTACACACAGTTAACGAATATTGA

mRNA sequence

GGATATCGCTACATCAATGAGAGTGGCCAGATTACCGACTCAATATGCTTATCATTTTGGGAACAAGATCTAGTGGGAAGCTAGGAACATAATTACACAAGATGGTGTTCTCTTAAATGAGAAGAGTTCAGCTGTGAGTTTTAGTGGAGTGTACACACAGTTAACGAATATTGA

Coding sequence (CDS)

GGATATCGCTACATCAATGAGAGTGGCCAGATTACCGACTCAATATGCTTATCATTTTGGGAACAAGATCTAGTGGGAAGCTAGGAACATAATTACACAAGATGGTGTTCTCTTAAATGAGAAGAGTTCAGCTGTGAGTTTTAGTGGAGTGTACACACAGTTAACGAATATTGA

Protein sequence

GYRYINESGQITDSICLSFWEQDLVGS*EHNYTRWCSLK*EEFSCEF*WSVHTVNEY*
Homology
[Close]
BLAST of Chy8G147240 vs. ExPASy TrEMBL
Match: A0A5D3C3J6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002960 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 7   ESGQITDSICLSFWEQDLVGS*EHNYTRWCS 38
           ESGQI DSICLSFW QD VGS EHN+TRW S
Sbjct: 576 ESGQIVDSICLSFWGQDRVGSWEHNHTRWNS 606

[Close]
BLAST of Chy8G147240 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 4   YINESGQITDSICLSFWEQDLVGS*EHNYTRWCSL 39
           Y +ESGQI DS+ LSFW QD V S EHN+TRW SL
Sbjct: 461 YTSESGQIADSMFLSFWGQDRVESWEHNHTRWNSL 495

[Close]
BLAST of Chy8G147240 vs. ExPASy TrEMBL
Match: A0A5A7SPG1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 7   ESGQITDSICLSFWEQDLVGS*EHNYTRWCSL 39
           ESGQI DSICLSF  QD +GS EHNYTRW  L
Sbjct: 103 ESGQIVDSICLSFLGQDRLGSWEHNYTRWNKL 134

[Close]
BLAST of Chy8G147240 vs. NCBI nr
Match: TYK05792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.14e-07
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 7   ESGQITDSICLSFWEQDLVGS*EHNYTRWCS 37
           ESGQI DSICLSFW QD VGS EHN+TRW S
Sbjct: 576 ESGQIVDSICLSFWGQDRVGSWEHNHTRWNS 606

[Close]
BLAST of Chy8G147240 vs. NCBI nr
Match: KAA0047821.1 (uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 2.62e-06
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 4   YINESGQITDSICLSFWEQDLVGS*EHNYTRWCSL 38
           Y +ESGQI DS+ LSFW QD V S EHN+TRW SL
Sbjct: 461 YTSESGQIADSMFLSFWGQDRVESWEHNHTRWNSL 495

[Close]
BLAST of Chy8G147240 vs. NCBI nr
Match: KAA0026081.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 2.64e-06
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 7   ESGQITDSICLSFWEQDLVGS*EHNYTRWCSL 38
           ESGQI DSICLSF  QD +GS EHNYTRW  L
Sbjct: 103 ESGQIVDSICLSFLGQDRLGSWEHNYTRWNKL 134

The following BLAST results are available for this feature:
BLAST of Chy8G147240 vs.
Match NameE-valueIdentityDescription
BLAST of Chy8G147240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C3J61.4e-0580.65Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00296... [more]
A0A5A7U2P42.0e-0468.57Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7SPG12.6e-0475.00Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=... [more]
BLAST of Chy8G147240 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK05792.11.14e-0780.65gag/pol protein [Cucumis melo var. makuwa][more]
KAA0047821.12.62e-0668.57uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa][more]
KAA0026081.12.64e-0675.00pol protein [Cucumis melo var. makuwa][more]
BLAST of Chy8G147240 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G147240.1Chy8G147240.1mRNA