Chy8G147160 (gene) Cucumber (hystrix) v1

Overview
NameChy8G147160
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH08: 2485174 .. 2486796 (-)
RNA-Seq ExpressionChy8G147160
SyntenyChy8G147160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCAGACACTTGTTTGGTTGCCAAGAAACAAAGCAGCCAAACCAAAAAAAAAATACACAAAAATTTCAGGTGGGTCAACCGGAAAACAATTGTATTTGGAACCCATTTCCAGTTTCGACGACTTCCCGAGGAATTTGGAAGTTCTCAGGTCAGTCTAGCACCTCAATATTTCTATACCTAATTTTTCACATGGGTCTGGAAGAAGGAGATGTTTTCCTTTTTTTTTTCTCTAACCTCCATTTGATTATGATTTCTAGAAAATGGAACAGCCTAGTATTTTAGAAGGGATCAAATTTGTTCCTTATAACTGCTGATTATTAGTTGTAAATCCTCAATAATATGTTTCTGCTGTTTATTTGATTGATATACAAAGGATCAAGCCTTACCATTCTATGAACCCTATTAAATTTATGTATTCAACTGCTTTGAGGGAACAGAAACCATGACTTGTGGATGGATTTGGTTATATCTTAATGTAACCTAACAATCTTTGGAATTTCAATAACTTTTCCACCAACCCTTTTATTTCTCTGTAAACTATTGAACCTGTCAACTAACCCGTATGGATGTATGATTATGAAGATTGTGCCCTGAGATCGAGGCTATGGAATTTGGACCAGGCCATGAGATCCGTTCTAGGACCAATTGGACCAGGATTCACCAATCTTGGGTGCTGTGGGACTCCATGGTTAGATATCATTACTTCCCCTGTGTTCTGAGATGATATTATTTTATTGATTCTTTGATATTTTCCTTGTTTCTGCTGTATCTTATGAACACATGTCAAAATGTTTTGGTAATAAAAAAAGAATAAAACAATAATGGTTCTCTTTAGTCATAGCTCACAGTCATTTCAAGTTCTTTACCATATTTCTATGCTTTTACTTTTCTCCTCCTCCTCCTACCTATCTACCCTTTGGTTCTTTTTTTACATAATCATAACTTGGAGTAAACCTTGTCTTTTTCATAAAGGAAAAACCAATGAATTTCTTCTTTTCTCCTATATTTAAATGAAACTTGTTGTATTCTGTCTCATCTCCAGGAGCCACCTCCTTCTCAACCTGCCATAACCTGTGAAACTTTGTTAGCTTCTGAAAGAAAGGCCCACCTTTTTCCTTTCTTCTTATTGCTATTTAAGGTTTGAAAACTGTTCCCCTCTGCTTATGTTTATTTAACTATTTTGTTGAAATGGTAGTTTCTTCAGTGTCTGGGTTTCGAGGTAGAACTGTCTTGCTGGATTCTGAAAAACACCGCTGTTGAAATATAGACCCTTTTCTTTATCAGTTCAATTTCAACAGAACTGTTCAATTTGTACCTCCCTCCATTGTGATTGTTTGAGTACTCGAGTGGACCTGACACTTTGATACAATTCATGTCTGCTTGCCATGATTGAGATTTGAGAAAAGAGCTAGATGCTGTTAAGATTTTTCCGTTTGAGTCTTGTTATTTGGTGTTCTAATCTTGTGTAAATTTCTGAACCGAGAAATTTTGGTTGGGGAACTTTCCACATCATGTTTAGTTTAGTTCATGTAAGATAAAATATTCGGTAGATTTTGAAGGGTAGTTTCGTTTTTGCACATGGACCCCAAAGGATGATGGCCAAGAAAACGGGCTAA

mRNA sequence

ATGGAGAAGCAGACACTTGTTTGGTTGCCAAGAAACAAAGCAGCCAAACCAAAAAAAAAATACACAAAAATTTCAGGTGGGTCAACCGGAAAACAATTGTATTTGGAACCCATTTCCAGTTTCGACGACTTCCCGAGGAATTTGGAAGTTCTCAGATTGTGCCCTGAGATCGAGGCTATGGAATTTGGACCAGGCCATGAGATCCGTTCTAGGACCAATTGGACCAGGATTCACCAATCTTGGGTGCTGTGGGACTCCATGGAGCCACCTCCTTCTCAACCTGCCATAACCTGTGAAACTTTGTTAGCTTCTGAAAGAAAGGCCCACCTTTTTCCTTTCTTCTTATTGCTATTTAAGGGTAGTTTCGTTTTTGCACATGGACCCCAAAGGATGATGGCCAAGAAAACGGGCTAA

Coding sequence (CDS)

ATGGAGAAGCAGACACTTGTTTGGTTGCCAAGAAACAAAGCAGCCAAACCAAAAAAAAAATACACAAAAATTTCAGGTGGGTCAACCGGAAAACAATTGTATTTGGAACCCATTTCCAGTTTCGACGACTTCCCGAGGAATTTGGAAGTTCTCAGATTGTGCCCTGAGATCGAGGCTATGGAATTTGGACCAGGCCATGAGATCCGTTCTAGGACCAATTGGACCAGGATTCACCAATCTTGGGTGCTGTGGGACTCCATGGAGCCACCTCCTTCTCAACCTGCCATAACCTGTGAAACTTTGTTAGCTTCTGAAAGAAAGGCCCACCTTTTTCCTTTCTTCTTATTGCTATTTAAGGGTAGTTTCGTTTTTGCACATGGACCCCAAAGGATGATGGCCAAGAAAACGGGCTAA

Protein sequence

MEKQTLVWLPRNKAAKPKKKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCPEIEAMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCETLLASERKAHLFPFFLLLFKGSFVFAHGPQRMMAKKTG*
Homology
[Close]
BLAST of Chy8G147160 vs. ExPASy TrEMBL
Match: A0A0A0KZ13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G598020 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.3e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MEKQTLVWLPRNKAAKPKKKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCPEIEAM 60
          MEKQTLVWLPRNKAA PK+KYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLC EIE M
Sbjct: 1  MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM 60

Query: 61 EFGPGHEIRSRTNWTRIHQSWVLWDSME 89
          EFGPGHEIRSRTNWTRIHQSWVLWDSM+
Sbjct: 61 EFGPGHEIRSRTNWTRIHQSWVLWDSMD 88

[Close]
BLAST of Chy8G147160 vs. NCBI nr
Match: KAE8649779.1 (hypothetical protein Csa_012265 [Cucumis sativus])

HSP 1 Score: 205 bits (521), Expect = 7.26e-66
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MEKQTLVWLPRNKAAKPKKKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCPEIEAM 60
           MEKQTLVWLPRNKAA PK+KYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLC EIE M
Sbjct: 1   MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM 60

Query: 61  EFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCET 100
           EFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCET
Sbjct: 61  EFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCET 100

[Close]
BLAST of Chy8G147160 vs. NCBI nr
Match: KAG7010553.1 (hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.0 bits (245), Expect = 3.00e-24
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 51  LRLCPEIEAMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCETLLASERKAHL 110
           ++  PE+E MEFGPG E RS T WTRIH SWVLW S EPPPS+P+I CET LA+E K HL
Sbjct: 1   MKTYPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETSLAAEGKPHL 60

Query: 111 FPF 113
           FPF
Sbjct: 61  FPF 63

[Close]
BLAST of Chy8G147160 vs. NCBI nr
Match: KAG6570707.1 (Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 5.34e-15
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 55  PEIEAMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCET 100
           PE+E MEFGPG E RS T WTRIH SWVLW S EPPPS+P+I CET
Sbjct: 31  PEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACET 76

[Close]
BLAST of Chy8G147160 vs. NCBI nr
Match: KGN47177.2 (hypothetical protein Csa_020828 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 8.21e-09
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 38 ISSFDDFPRNLEVLRLCPEIEAMEFGPGHEIRSRTNWTRIHQSWVLWDS 86
          + SFDDF R LEVLR  PE+E MEFGPG E  + T  TRI Q WVLW S
Sbjct: 50 LKSFDDFARKLEVLRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVS 98

The following BLAST results are available for this feature:
BLAST of Chy8G147160 vs.
Match NameE-valueIdentityDescription
BLAST of Chy8G147160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ134.3e-4294.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G598020 PE=4 SV=1[more]
BLAST of Chy8G147160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649779.17.26e-6696.00hypothetical protein Csa_012265 [Cucumis sativus][more]
KAG7010553.13.00e-2468.25hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6570707.15.34e-1573.91Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia][more]
KGN47177.28.21e-0963.27hypothetical protein Csa_020828 [Cucumis sativus][more]
BLAST of Chy8G147160 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G147160.1Chy8G147160.1mRNA