Chy8G146890 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G146890
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	PMD domain-containing protein
Location	chrH08: 2057440 .. 2058578 (-)
RNA-Seq Expression	Chy8G146890
Synteny	Chy8G146890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTACGATAAGCCTGTTGCACGGAAGCAAAAGAAGGCATCACGCTCCAGATCTACTTAAAACCCTGATGGCTCGAAGGTCCAATATCGAGAATGGTCCTCTAGAGAAAACATGTTATTTACAAAACTTGGCATAAGAGACGATCTGAAGGATGCAACATATTTAGCTGCCTCTTCGTGTTTCTGCACAAGGGATCATTTCTTCGCCTTGGAGTGTTTAGGATTGCAAGCTCAATGGCTGACAAATCTATTTATAGTCTTGCAATCTCAGTTTTGGCCAACATTTATCATGGGCTAAGTTTAATGACTAAAGCCTCGAATTCAGTAGGACGCATGGACTTTCAATTTCTCATGGATTACGTCCATGGCTGGTTAGCTCATTATTTTGGCACTCATTACCCACTCCCGAAAGAAGTTCGAGGTCCCAAGATGGCTAACTTCTCTAACGAAGGTGGGTCTATTTATTTTGGAGAATATGAGGCGCGAGAACTGATTCATAATGGTGTAAGAATTCAGTGGCATGCGAGTCTTCAAAACCGAAATAAACATGAACGCATGATTGATACTCGTGATTCATCGTTTCTGCAGACTTCCTATTTTGCGAGCATGCGTTCCTGCTACGTGTAATCCCGCTGTGGGAATATTTGGATTGTAACATCATACATTCCGTATCGATTTGGGAGACAGTTTGACTTTTACCAGGATATCCCCAATGATATAAGGGGCATGTCACCTGTGATCTCACTGAATAATATATTACATCATTGGAGGTTGTGTGTGAGGCGTAACACTTCATCTGAGTTATACTTGTCTGTCCGTTCATTAGAGCCTTGCAAGCATGTTACGCAACGATTTAAAAATTGATGGGCCATAAAGCACGAGACCTATTTTGAGGACAACATACACCATTTGGTGAGCAGTGTCATTCCTCCCCCATCGAAACCAAAACTACCCAAGAACCGAGGGAGCAACCAGGGTGGTAAGAAAATTTGTTTGGTTGAAGTGATGACTCATATCCTTGAGAAAAATGTGGCAGAGCATAAAGAGGAGAGTGACAGCAGCAAAAGTGATCGTCATTGGAAAAGACCTTTGAAGCAAGCGAAGGTATCAGGTGATGACTCTTGCGGAAGGGGCTCGAGT

mRNA sequence

AGCTACGATAAGCCTGTTGCACGGAAGCAAAAGAAGGCATCACGCTCCAGATCTACTTAAAACCCTGATGGCTCGAAGGTCCAATATCGAGAATGGTCCTCTAGAGAAAACATGTTATTTACAAAACTTGGCATAAGAGACGATCTGAAGGATGCAACATATTTAGCTGCCTCTTCGTGTTTCTGCACAAGGGATCATTTCTTCGCCTTGGAGTGTTTAGGATTGCAAGCTCAATGGCTGACAAATCTATTTATAGTCTTGCAATCTCAGTTTTGGCCAACATTTATCATGGGCTAAGTTTAATGACTAAAGCCTCGAATTCAGTAGGACGCATGGACTTTCAATTTCTCATGGATTACGTCCATGGCTGGTTAGCTCATTATTTTGGCACTCATTACCCACTCCCGAAAGAAGTTCGAGGTCCCAAGATGGCTAACTTCTCTAACGAAGGTGGGTCTATTTATTTTGGAGAATATGAGGCGCGAGAACTGATTCATAATGGTGTAAGAATTCAGTGGCATGCGAGTCTTCAAAACCGAAATAAACATGAACGCATGATTGATACTCGTGATTCATCGTTTCTGCAGACTTCCTATTTTGCGAGCATGCGTTCCTGCTACGTGTAATCCCGCTGTGGGAATATTTGGATTGTAACATCATACATTCCGTATCGATTTGGGAGACAGTTTGACTTTTACCAGGATATCCCCAATGATATAAGGGGCATGTCACCTGTGATCTCACTGAATAATATATTACATCATTGGAGGTTGTGTGTGAGGCGTAACACTTCATCTGAGTTATACTTGTCTGTCCGTTCATTAGAGCCTTGCAAGCATGTTACGCAACGATTTAAAAATTGATGGGCCATAAAGCACGAGACCTATTTTGAGGACAACATACACCATTTGGTGAGCAGTGTCATTCCTCCCCCATCGAAACCAAAACTACCCAAGAACCGAGGGAGCAACCAGGGTGGTAAGAAAATTTGTTTGGTTGAAGTGATGACTCATATCCTTGAGAAAAATGTGGCAGAGCATAAAGAGGAGAGTGACAGCAGCAAAAGTGATCGTCATTGGAAAAGACCTTTGAAGCAAGCGAAGGTATCAGGTGATGACTCTTGCGGAAGGGGCTCGAGT

Coding sequence (CDS)

AGCTACGATAAGCCTGTTGCACGGAAGCAAAAGAAGGCATCACGCTCCAGATCTACTTAAAACCCTGATGGCTCGAAGGTCCAATATCGAGAATGGTCCTCTAGAGAAAACATGTTATTTACAAAACTTGGCATAAGAGACGATCTGAAGGATGCAACATATTTAGCTGCCTCTTCGTGTTTCTGCACAAGGGATCATTTCTTCGCCTTGGAGTGTTTAGGATTGCAAGCTCAATGGCTGACAAATCTATTTATAGTCTTGCAATCTCAGTTTTGGCCAACATTTATCATGGGCTAAGTTTAATGACTAAAGCCTCGAATTCAGTAGGACGCATGGACTTTCAATTTCTCATGGATTACGTCCATGGCTGGTTAGCTCATTATTTTGGCACTCATTACCCACTCCCGAAAGAAGTTCGAGGTCCCAAGATGGCTAACTTCTCTAACGAAGGTGGGTCTATTTATTTTGGAGAATATGAGGCGCGAGAACTGATTCATAATGGTGTAAGAATTCAGTGGCATGCGAGTCTTCAAAACCGAAATAAACATGAACGCATGATTGATACTCGTGATTCATCGTTTCTGCAGACTTCCTATTTTGCGAGCATGCGTTCCTGCTACGTGTAATCCCGCTGTGGGAATATTTGGATTGTAACATCATACATTCCGTATCGATTTGGGAGACAGTTTGACTTTTACCAGGATATCCCCAATGATATAAGGGGCATGTCACCTGTGATCTCACTGAATAATATATTACATCATTGGAGGTTGTGTGTGAGGCGTAACACTTCATCTGAGTTATACTTGTCTGTCCGTTCATTAGAGCCTTGCAAGCATGTTACGCAACGATTTAAAAATTGATGGGCCATAAAGCACGAGACCTATTTTGAGGACAACATACACCATTTGGTGAGCAGTGTCATTCCTCCCCCATCGAAACCAAAACTACCCAAGAACCGAGGGAGCAACCAGGGTGGTAAGAAAATTTGTTTGGTTGAAGTGATGACTCATATCCTTGAGAAAAATGTGGCAGAGCATAAAGAGGAGAGTGACAGCAGCAAAAGTGATCGTCATTGGAAAAGACCTTTGAAGCAAGCGAAGGTATCAGGTGATGACTCTTGCGGAAGGGGCTCGAGT

Protein sequence

SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAASSCFCTRDHFFALECLGLQAQWLTNLFIVLQSQFWPTFIMG*V**LKPRIQ*DAWTFNFSWITSMAG*LIILALITHSRKKFEVPRWLTSLTKVGLFILENMRREN*FIMV*EFSGMRVFKTEINMNA*LILVIHRFCRLPILRACVPATCNPAVGIFGL*HHTFRIDLGDSLTFTRISPMI*GACHL*SH*IIYYIIGGCV*GVTLHLSYTCLSVH*SLASMLRNDLKIDGP*STRPILRTTYTIW*AVSFLPHRNQNYPRTEGATRVVRKFVWLK**LISLRKMWQSIKRRVTAAKVIVIGKDL*SKRRYQVMTLAEGARX

Homology

[Close]

BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-16
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 58
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 269 SYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 325

[Close]

BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match: A0A5D3DCE5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18270G00010 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-16
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 58
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 230 SYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 286

[Close]

BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-16
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 58
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 93  SYDKPKTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 149

[Close]

BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match: A0A5A7TIV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002340 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-16
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA-SS 60
           SYDKP  RKQKK SRS+ST NPDGSK+Q REWSSRE+MLF +LGI+DDLKD TYLAA  S
Sbjct: 225 SYDKPTTRKQKKTSRSKSTQNPDGSKIQAREWSSRESMLFAELGIKDDLKDETYLAAFLS 284

Query: 61  C------FCTRDHFFALE 72
           C      F  +  FF LE
Sbjct: 285 CWLCLFVFPQKGSFFVLE 302

[Close]

BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match: A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-15
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 58
           SYDKP  RKQKKASRS+ST NP+GSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 230 SYDKPTTRKQKKASRSKSTQNPNGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 286

[Close]

BLAST of Chy8G146890 vs. NCBI nr
Match: TYK20969.1 (hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.01e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 57
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 230 SYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 286

[Close]

BLAST of Chy8G146890 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.04e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 57
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 269 SYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 325

[Close]

BLAST of Chy8G146890 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.05e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 57
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 93  SYDKPKTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 149

[Close]

BLAST of Chy8G146890 vs. NCBI nr
Match: KAA0043323.1 (hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.01e-16
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAAS-S 60
           SYDKP  RKQKK SRS+ST NPDGSK+Q REWSSRE+MLF +LGI+DDLKD TYLAA  S
Sbjct: 225 SYDKPTTRKQKKTSRSKSTQNPDGSKIQAREWSSRESMLFAELGIKDDLKDETYLAAFLS 284

Query: 61  C------FCTRDHFFALE 71
           C      F  +  FF LE
Sbjct: 285 CWLCLFVFPQKGSFFVLE 302

[Close]

BLAST of Chy8G146890 vs. NCBI nr
Match: KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.24e-16
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 57
           SYDKP  RKQKKASRS+ST NP+GSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 230 SYDKPTTRKQKKASRSKSTQNPNGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 286

The following BLAST results are available for this feature:

BLAST of Chy8G146890 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G146890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGW6	3.0e-16	82.46	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3DCE5	3.0e-16	82.46	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7UVI5	5.1e-16	82.46	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TIV2	5.1e-16	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U8X8	1.1e-15	80.70	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Chy8G146890 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20969.1	1.01e-17	82.46	hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]	[more]
KAA0053466.1	3.04e-17	82.46	hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	3.05e-17	82.46	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]
KAA0043323.1	1.01e-16	66.67	hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa]	[more]
KAA0052363.1	1.24e-16	80.70	hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]	[more]

BLAST of Chy8G146890 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G146890.1	Chy8G146890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane