Chy8G146890 (gene) Cucumber (hystrix) v1

Overview
NameChy8G146890
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPMD domain-containing protein
LocationchrH08: 2057440 .. 2058578 (-)
RNA-Seq ExpressionChy8G146890
SyntenyChy8G146890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTACGATAAGCCTGTTGCACGGAAGCAAAAGAAGGCATCACGCTCCAGATCTACTTAAAACCCTGATGGCTCGAAGGTCCAATATCGAGAATGGTCCTCTAGAGAAAACATGTTATTTACAAAACTTGGCATAAGAGACGATCTGAAGGATGCAACATATTTAGCTGCCTCTTCGTGTTTCTGCACAAGGGATCATTTCTTCGCCTTGGAGTGTTTAGGATTGCAAGCTCAATGGCTGACAAATCTATTTATAGTCTTGCAATCTCAGTTTTGGCCAACATTTATCATGGGCTAAGTTTAATGACTAAAGCCTCGAATTCAGTAGGACGCATGGACTTTCAATTTCTCATGGATTACGTCCATGGCTGGTTAGCTCATTATTTTGGCACTCATTACCCACTCCCGAAAGAAGTTCGAGGTCCCAAGATGGCTAACTTCTCTAACGAAGGTGGGTCTATTTATTTTGGAGAATATGAGGCGCGAGAACTGATTCATAATGGTGTAAGAATTCAGTGGCATGCGAGTCTTCAAAACCGAAATAAACATGAACGCATGATTGATACTCGTGATTCATCGTTTCTGCAGACTTCCTATTTTGCGAGCATGCGTTCCTGCTACGTGTAATCCCGCTGTGGGAATATTTGGATTGTAACATCATACATTCCGTATCGATTTGGGAGACAGTTTGACTTTTACCAGGATATCCCCAATGATATAAGGGGCATGTCACCTGTGATCTCACTGAATAATATATTACATCATTGGAGGTTGTGTGTGAGGCGTAACACTTCATCTGAGTTATACTTGTCTGTCCGTTCATTAGAGCCTTGCAAGCATGTTACGCAACGATTTAAAAATTGATGGGCCATAAAGCACGAGACCTATTTTGAGGACAACATACACCATTTGGTGAGCAGTGTCATTCCTCCCCCATCGAAACCAAAACTACCCAAGAACCGAGGGAGCAACCAGGGTGGTAAGAAAATTTGTTTGGTTGAAGTGATGACTCATATCCTTGAGAAAAATGTGGCAGAGCATAAAGAGGAGAGTGACAGCAGCAAAAGTGATCGTCATTGGAAAAGACCTTTGAAGCAAGCGAAGGTATCAGGTGATGACTCTTGCGGAAGGGGCTCGAGT

mRNA sequence

AGCTACGATAAGCCTGTTGCACGGAAGCAAAAGAAGGCATCACGCTCCAGATCTACTTAAAACCCTGATGGCTCGAAGGTCCAATATCGAGAATGGTCCTCTAGAGAAAACATGTTATTTACAAAACTTGGCATAAGAGACGATCTGAAGGATGCAACATATTTAGCTGCCTCTTCGTGTTTCTGCACAAGGGATCATTTCTTCGCCTTGGAGTGTTTAGGATTGCAAGCTCAATGGCTGACAAATCTATTTATAGTCTTGCAATCTCAGTTTTGGCCAACATTTATCATGGGCTAAGTTTAATGACTAAAGCCTCGAATTCAGTAGGACGCATGGACTTTCAATTTCTCATGGATTACGTCCATGGCTGGTTAGCTCATTATTTTGGCACTCATTACCCACTCCCGAAAGAAGTTCGAGGTCCCAAGATGGCTAACTTCTCTAACGAAGGTGGGTCTATTTATTTTGGAGAATATGAGGCGCGAGAACTGATTCATAATGGTGTAAGAATTCAGTGGCATGCGAGTCTTCAAAACCGAAATAAACATGAACGCATGATTGATACTCGTGATTCATCGTTTCTGCAGACTTCCTATTTTGCGAGCATGCGTTCCTGCTACGTGTAATCCCGCTGTGGGAATATTTGGATTGTAACATCATACATTCCGTATCGATTTGGGAGACAGTTTGACTTTTACCAGGATATCCCCAATGATATAAGGGGCATGTCACCTGTGATCTCACTGAATAATATATTACATCATTGGAGGTTGTGTGTGAGGCGTAACACTTCATCTGAGTTATACTTGTCTGTCCGTTCATTAGAGCCTTGCAAGCATGTTACGCAACGATTTAAAAATTGATGGGCCATAAAGCACGAGACCTATTTTGAGGACAACATACACCATTTGGTGAGCAGTGTCATTCCTCCCCCATCGAAACCAAAACTACCCAAGAACCGAGGGAGCAACCAGGGTGGTAAGAAAATTTGTTTGGTTGAAGTGATGACTCATATCCTTGAGAAAAATGTGGCAGAGCATAAAGAGGAGAGTGACAGCAGCAAAAGTGATCGTCATTGGAAAAGACCTTTGAAGCAAGCGAAGGTATCAGGTGATGACTCTTGCGGAAGGGGCTCGAGT

Coding sequence (CDS)

AGCTACGATAAGCCTGTTGCACGGAAGCAAAAGAAGGCATCACGCTCCAGATCTACTTAAAACCCTGATGGCTCGAAGGTCCAATATCGAGAATGGTCCTCTAGAGAAAACATGTTATTTACAAAACTTGGCATAAGAGACGATCTGAAGGATGCAACATATTTAGCTGCCTCTTCGTGTTTCTGCACAAGGGATCATTTCTTCGCCTTGGAGTGTTTAGGATTGCAAGCTCAATGGCTGACAAATCTATTTATAGTCTTGCAATCTCAGTTTTGGCCAACATTTATCATGGGCTAAGTTTAATGACTAAAGCCTCGAATTCAGTAGGACGCATGGACTTTCAATTTCTCATGGATTACGTCCATGGCTGGTTAGCTCATTATTTTGGCACTCATTACCCACTCCCGAAAGAAGTTCGAGGTCCCAAGATGGCTAACTTCTCTAACGAAGGTGGGTCTATTTATTTTGGAGAATATGAGGCGCGAGAACTGATTCATAATGGTGTAAGAATTCAGTGGCATGCGAGTCTTCAAAACCGAAATAAACATGAACGCATGATTGATACTCGTGATTCATCGTTTCTGCAGACTTCCTATTTTGCGAGCATGCGTTCCTGCTACGTGTAATCCCGCTGTGGGAATATTTGGATTGTAACATCATACATTCCGTATCGATTTGGGAGACAGTTTGACTTTTACCAGGATATCCCCAATGATATAAGGGGCATGTCACCTGTGATCTCACTGAATAATATATTACATCATTGGAGGTTGTGTGTGAGGCGTAACACTTCATCTGAGTTATACTTGTCTGTCCGTTCATTAGAGCCTTGCAAGCATGTTACGCAACGATTTAAAAATTGATGGGCCATAAAGCACGAGACCTATTTTGAGGACAACATACACCATTTGGTGAGCAGTGTCATTCCTCCCCCATCGAAACCAAAACTACCCAAGAACCGAGGGAGCAACCAGGGTGGTAAGAAAATTTGTTTGGTTGAAGTGATGACTCATATCCTTGAGAAAAATGTGGCAGAGCATAAAGAGGAGAGTGACAGCAGCAAAAGTGATCGTCATTGGAAAAGACCTTTGAAGCAAGCGAAGGTATCAGGTGATGACTCTTGCGGAAGGGGCTCGAGT

Protein sequence

SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAASSCFCTRDHFFALECLGLQAQWLTNLFIVLQSQFWPTFIMG*V**LKPRIQ*DAWTFNFSWITSMAG*LIILALITHSRKKFEVPRWLTSLTKVGLFILENMRREN*FIMV*EFSGMRVFKTEINMNA*LILVIHRFCRLPILRACVPATCNPAVGIFGL*HHTFRIDLGDSLTFTRISPMI*GACHL*SH*IIYYIIGGCV*GVTLHLSYTCLSVH*SLASMLRNDLKIDGP*STRPILRTTYTIW*AVSFLPHRNQNYPRTEGATRVVRKFVWLK**LISLRKMWQSIKRRVTAAKVIVIGKDL*SKRRYQVMTLAEGARX
Homology
[Close]
BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-16
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 58
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 269 SYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 325

[Close]
BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match: A0A5D3DCE5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18270G00010 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-16
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 58
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 230 SYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 286

[Close]
BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-16
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 58
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 93  SYDKPKTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 149

[Close]
BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match: A0A5A7TIV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002340 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.1e-16
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 0 

Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA-SS 60
           SYDKP  RKQKK SRS+ST NPDGSK+Q REWSSRE+MLF +LGI+DDLKD TYLAA  S
Sbjct: 225 SYDKPTTRKQKKTSRSKSTQNPDGSKIQAREWSSRESMLFAELGIKDDLKDETYLAAFLS 284

Query: 61  C------FCTRDHFFALE 72
           C      F  +  FF LE
Sbjct: 285 CWLCLFVFPQKGSFFVLE 302

[Close]
BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match: A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-15
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 58
           SYDKP  RKQKKASRS+ST NP+GSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 230 SYDKPTTRKQKKASRSKSTQNPNGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 286

[Close]
BLAST of Chy8G146890 vs. NCBI nr
Match: TYK20969.1 (hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.01e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 57
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 230 SYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 286

[Close]
BLAST of Chy8G146890 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.04e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 57
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 269 SYDKPTTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 325

[Close]
BLAST of Chy8G146890 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.05e-17
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 57
           SYDKP  RKQKKASRS+ST NPDGSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 93  SYDKPKTRKQKKASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 149

[Close]
BLAST of Chy8G146890 vs. NCBI nr
Match: KAA0043323.1 (hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.01e-16
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 0 

Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAAS-S 60
           SYDKP  RKQKK SRS+ST NPDGSK+Q REWSSRE+MLF +LGI+DDLKD TYLAA  S
Sbjct: 225 SYDKPTTRKQKKTSRSKSTQNPDGSKIQAREWSSRESMLFAELGIKDDLKDETYLAAFLS 284

Query: 61  C------FCTRDHFFALE 71
           C      F  +  FF LE
Sbjct: 285 CWLCLFVFPQKGSFFVLE 302

[Close]
BLAST of Chy8G146890 vs. NCBI nr
Match: KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.24e-16
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1   SYDKPVARKQKKASRSRST*NPDGSKVQYREWSSRENMLFTKLGIRDDLKDATYLAA 57
           SYDKP  RKQKKASRS+ST NP+GSK+Q REWSSRE+MLF +LGIRDDLKD TYLAA
Sbjct: 230 SYDKPTTRKQKKASRSKSTQNPNGSKIQAREWSSRESMLFAELGIRDDLKDETYLAA 286

The following BLAST results are available for this feature:
BLAST of Chy8G146890 vs.
Match NameE-valueIdentityDescription
BLAST of Chy8G146890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UGW63.0e-1682.46PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3DCE53.0e-1682.46PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7UVI55.1e-1682.46PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7TIV25.1e-1666.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U8X81.1e-1580.70PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
BLAST of Chy8G146890 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK20969.11.01e-1782.46hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa][more]
KAA0053466.13.04e-1782.46hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa][more]
KAA0057575.13.05e-1782.46hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa][more]
KAA0043323.11.01e-1666.67hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa][more]
KAA0052363.11.24e-1680.70hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa][more]
BLAST of Chy8G146890 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G146890.1Chy8G146890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane