Chy8G146810 (gene) Cucumber (hystrix) v1

Overview
NameChy8G146810
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptiongirdin-like
LocationchrH08: 1990664 .. 1991758 (+)
RNA-Seq ExpressionChy8G146810
SyntenyChy8G146810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAACTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGACTATGACTTTTCATATAATCTTGAAGACTATCAAGGAAAAAAACATCGAGCAGTATGTGCATGGAAGTCTGTGAGGAAGATAAAAGACAAAGGACACTAAGAAGGGGTTACTAGTGGATATGAGGCATGGCAGACAAATGGAAGGAAGAATGTAATATATACCTTAAGGGAGGTAGTTGAAAGGTAGAAGAGACGACCTCTGAACAACCGGACCAGTAGGTTGAGAAGACCATTAAATTAGAAAAGAAAAATCGATTGTTAGAGCAAGAGAATGAGAAACTTCGAAAGGAGACGAGCCAATGGATGGATCATGCGACTATTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAAAAATTAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGCGAATGAATAAAGCGAATAGAAGCTTGAAAAATGAAAAGACAATATTACAGAGAACAGTAGAATCGCAAGATGAATATATTAAAGATTTAGAAAGTAGGAAGGAATATTCTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGTAAACGGGAAGCACATATAGTAGATTTGGAAGTACACAATCATTCTCTATGCCAAACTGTTGATAGCCTACATGTGAAGATGGTTGAGCACTCTGAAGAGTATAAGATACTAAAAAATTATGCTGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATAAGAATTATTGAAGACAGATTACATGCAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTTCAAGCATTAGTTGAACGTGTAGATCAAACAATTGGATTTCTCAGAATAGTGTCTAGAAGAGCAAATGGTTTTGCAGAATGGACAGCTGATTTATGGATTAATTTTTTCTCAATACAACCTCATGCAGATGATCTGAATAGATTCTTAAAGATGATATGCAGAGAACTTGGGCATTTTGGTCGTTTTCATTAAGCTGTTTATTTTGCTATTA

mRNA sequence

GTTAACTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGACTATGACTTTTCATATAATCTTGAAGACTATCAAGGAAAAAAACATCGAGCAGTATGTGCATGGAAGTCTGTGAGGAAGATAAAAGACAAAGGACACTAAGAAGGGGTTACTAGTGGATATGAGGCATGGCAGACAAATGGAAGGAAGAATGTAATATATACCTTAAGGGAGGTAGTTGAAAGGTAGAAGAGACGACCTCTGAACAACCGGACCAGTAGGTTGAGAAGACCATTAAATTAGAAAAGAAAAATCGATTGTTAGAGCAAGAGAATGAGAAACTTCGAAAGGAGACGAGCCAATGGATGGATCATGCGACTATTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAAAAATTAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGCGAATGAATAAAGCGAATAGAAGCTTGAAAAATGAAAAGACAATATTACAGAGAACAGTAGAATCGCAAGATGAATATATTAAAGATTTAGAAAGTAGGAAGGAATATTCTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGTAAACGGGAAGCACATATAGTAGATTTGGAAGTACACAATCATTCTCTATGCCAAACTGTTGATAGCCTACATGTGAAGATGGTTGAGCACTCTGAAGAGTATAAGATACTAAAAAATTATGCTGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATAAGAATTATTGAAGACAGATTACATGCAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTTCAAGCATTAGTTGAACGTGTAGATCAAACAATTGGATTTCTCAGAATAGTGTCTAGAAGAGCAAATGGTTTTGCAGAATGGACAGCTGATTTATGGATTAATTTTTTCTCAATACAACCTCATGCAGATGATCTGAATAGATTCTTAAAGATGATATGCAGAGAACTTGGGCATTTTGGTCGTTTTCATTAAGCTGTTTATTTTGCTATTA

Coding sequence (CDS)

GTTAACTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGACTATGACTTTTCATATAATCTTGAAGACTATCAAGGAAAAAAACATCGAGCAGTATGTGCATGGAAGTCTGTGAGGAAGATAAAAGACAAAGGACACTAAGAAGGGGTTACTAGTGGATATGAGGCATGGCAGACAAATGGAAGGAAGAATGTAATATATACCTTAAGGGAGGTAGTTGAAAGGTAGAAGAGACGACCTCTGAACAACCGGACCAGTAGGTTGAGAAGACCATTAAATTAGAAAAGAAAAATCGATTGTTAGAGCAAGAGAATGAGAAACTTCGAAAGGAGACGAGCCAATGGATGGATCATGCGACTATTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAAAAATTAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGCGAATGAATAAAGCGAATAGAAGCTTGAAAAATGAAAAGACAATATTACAGAGAACAGTAGAATCGCAAGATGAATATATTAAAGATTTAGAAAGTAGGAAGGAATATTCTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGTAAACGGGAAGCACATATAGTAGATTTGGAAGTACACAATCATTCTCTATGCCAAACTGTTGATAGCCTACATGTGAAGATGGTTGAGCACTCTGAAGAGTATAAGATACTAAAAAATTATGCTGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATAAGAATTATTGAAGACAGATTACATGCAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTTCAAGCATTAGTTGAACGTGTAGATCAAACAATTGGATTTCTCAGAATAGTGTCTAGAAGAGCAAATGGTTTTGCAGAATGGACAGCTGATTTATGGATTAATTTTTTCTCAATACAACCTCATGCAGATGATCTGAATAGATTCTTAAAGATGATATGCAGAGAACTTGGGCATTTTGGTCGTTTTCATTAAGCTGTTTATTTTGCTATTA

Protein sequence

VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*EGVTSGYEAWQTNGRKNVIYTLREVVER*KRRPLNNRTSRLRRPLN*KRKIDC*SKRMRNFERRRANGWIMRLFCRKSLKRPRVS*KIKIS*KRILRC*IKR*GE*IKRIEA*KMKRQYYREQ*NRKMNILKI*KVGRNILSSLSMI*IHQLVNGKHI**IWKYTIILYAKLLIAYM*RWLSTLKSIRY*KIMLIPYTINLLHFKIQVRG*CKNKNY*RQITCK*RLIMICKGEIFKH*LNV*IKQLDFSE*CLEEQMVLQNGQLIYGLIFSQYNLMQMI*IDS*R*YAENLGILVVFIKLFILLL
Homology
[Close]
BLAST of Chy8G146810 vs. ExPASy TrEMBL
Match: A0A5A7VFL0 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-33
Identity = 72/90 (80.00%), Postives = 79/90 (87.78%), Query Frame = 0 

Query: 1   VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*E 60
           VNYTPLLVL QVWLKQFIPPTHNLQ++DFSY+ ED QGKK +AVCAWKS+RKIKDKGH E
Sbjct: 237 VNYTPLLVLHQVWLKQFIPPTHNLQEFDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYE 296

Query: 61  GVTSGYEAWQTNGRKNVIYTLREVVER*KR 91
           GVTSGYEAWQ N RKN+I   REVVER K+
Sbjct: 297 GVTSGYEAWQANRRKNIIDISREVVERGKK 326

[Close]
BLAST of Chy8G146810 vs. ExPASy TrEMBL
Match: A0A5D3CZ50 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-33
Identity = 73/89 (82.02%), Postives = 78/89 (87.64%), Query Frame = 0 

Query: 1   VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*E 60
           VNYTPLLVLRQVWLKQFIPPTHNLQ+ DFSY+ ED QGKK +AVCAWKS+RKIKDKGH E
Sbjct: 57  VNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYE 116

Query: 61  GVTSGYEAWQTNGRKNVIYTLREVVER*K 90
           GVTSGYEAWQ N RKN+I   REVVER K
Sbjct: 117 GVTSGYEAWQANRRKNIIDISREVVERGK 145

[Close]
BLAST of Chy8G146810 vs. ExPASy TrEMBL
Match: A0A5A7TNJ1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-33
Identity = 73/89 (82.02%), Postives = 78/89 (87.64%), Query Frame = 0 

Query: 1   VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*E 60
           VNYTPLLVLRQVWLKQFIPPTHNLQ+ DFSY+ ED QGKK +AVCAWKS+RKIKDKGH E
Sbjct: 166 VNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYE 225

Query: 61  GVTSGYEAWQTNGRKNVIYTLREVVER*K 90
           GVTSGYEAWQ N RKN+I   REVVER K
Sbjct: 226 GVTSGYEAWQANRRKNIIDISREVVERGK 254

[Close]
BLAST of Chy8G146810 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.7e-33
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 1   VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*E 60
           VNYTPLLVLRQVWLKQFIPPTHNLQ+ DFSY+ ED QGKK +AVCAWKS+RKIKDKGH E
Sbjct: 322 VNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYE 381

Query: 61  GVTSGYEAWQTNGRKNVIYTLREVVE 87
           GVTSGYEAWQ N RKN+I   REVVE
Sbjct: 382 GVTSGYEAWQANRRKNIIDISREVVE 407

[Close]
BLAST of Chy8G146810 vs. ExPASy TrEMBL
Match: A0A5D3DK34 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.7e-33
Identity = 74/109 (67.89%), Postives = 84/109 (77.06%), Query Frame = 0 

Query: 1   VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*E 60
           VNY PLLVLRQVWLKQFIPPTHNLQ+ DFSY+LED QGKK +AVCAWKS+RKIKDKGH E
Sbjct: 99  VNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDCQGKKRQAVCAWKSIRKIKDKGHYE 158

Query: 61  GVTSGYEAWQTNGRKNVIYTLREVVER*KRRPLNNRTSRLRRPLN*KRK 110
           GVTSGYEAWQ N RKN+I   REVVER K          +++ +  + K
Sbjct: 159 GVTSGYEAWQANRRKNIIDISREVVERGKETSFEQPNQWIKKSIELEEK 207

[Close]
BLAST of Chy8G146810 vs. NCBI nr
Match: XP_031740432.1 (uncharacterized protein LOC116403430 [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 1.96e-44
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1   VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*E 60
           VNYTPLLVLRQVWLKQFIPPTHNLQD DF+Y+ ED Q KKHRAVCAWKSVRKIKDKGH E
Sbjct: 171 VNYTPLLVLRQVWLKQFIPPTHNLQDSDFAYDHEDCQRKKHRAVCAWKSVRKIKDKGHYE 230

Query: 61  GVTSGYEAWQTNGRKNVIYTLREVVER 87
           GVTSGYEAWQTN RKNVIYTLREVVER
Sbjct: 231 GVTSGYEAWQTNRRKNVIYTLREVVER 257

[Close]
BLAST of Chy8G146810 vs. NCBI nr
Match: XP_031739496.1 (uncharacterized protein LOC116403043 [Cucumis sativus])

HSP 1 Score: 165 bits (417), Expect = 7.56e-44
Identity = 77/87 (88.51%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1   VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*E 60
           VNYTPLLVLRQVWLKQFIPPTHNLQD DF+Y+ ED Q KKHRAVCAWKSVRKIKDKGH E
Sbjct: 172 VNYTPLLVLRQVWLKQFIPPTHNLQDSDFAYDHEDCQRKKHRAVCAWKSVRKIKDKGHYE 231

Query: 61  GVTSGYEAWQTNGRKNVIYTLREVVER 87
           GVTSGYEAWQTN RKNVIYTL++VVER
Sbjct: 232 GVTSGYEAWQTNRRKNVIYTLKDVVER 258

[Close]
BLAST of Chy8G146810 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 1.48e-41
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1   VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*E 60
           VNYTPLLVLRQVWLKQFIPPTHNLQD DF+Y+ ED Q KKHRAVCAWKSVRKIKDKGH E
Sbjct: 26  VNYTPLLVLRQVWLKQFIPPTHNLQDSDFAYDHEDCQRKKHRAVCAWKSVRKIKDKGHYE 85

Query: 61  GVTSGYEAWQTNGRKNVIYTLREVVER 87
           GVTSGYEAWQTN RKNVIYTLREVVER
Sbjct: 86  GVTSGYEAWQTNRRKNVIYTLREVVER 112

[Close]
BLAST of Chy8G146810 vs. NCBI nr
Match: TYK16558.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (389), Expect = 7.85e-41
Identity = 72/87 (82.76%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 1   VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*E 60
           VNYTPLLVLRQVWLKQFIPPTHNLQ+ DFSY+ ED QGKK +AVCAWKS+RKIKDKGH E
Sbjct: 57  VNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYE 116

Query: 61  GVTSGYEAWQTNGRKNVIYTLREVVER 87
           GVTSGYEAWQ N RKN+I   REVVER
Sbjct: 117 GVTSGYEAWQANRRKNIIDISREVVER 143

[Close]
BLAST of Chy8G146810 vs. NCBI nr
Match: TYK21787.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (381), Expect = 3.79e-40
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 0 

Query: 1   VNYTPLLVLRQVWLKQFIPPTHNLQDYDFSYNLEDYQGKKHRAVCAWKSVRKIKDKGH*E 60
           VNYTPLLVLRQVWLKQFIPPTHNLQ+ DFSY+LED QG+K +AVCAWKS+RKIKDKGH E
Sbjct: 67  VNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDCQGQKRQAVCAWKSIRKIKDKGHYE 126

Query: 61  GVTSGYEAWQTNGRKNVIYTLREVVER 87
           GVT+GYEAWQ N  KN+I   REVVE+
Sbjct: 127 GVTNGYEAWQANRMKNIINISREVVEK 153

The following BLAST results are available for this feature:
BLAST of Chy8G146810 vs.
Match NameE-valueIdentityDescription
BLAST of Chy8G146810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VFL01.5e-3380.00Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=... [more]
A0A5D3CZ502.0e-3382.02Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE... [more]
A0A5A7TNJ12.0e-3382.02Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE... [more]
A0A5A7T5S75.7e-3382.56Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=... [more]
A0A5D3DK345.7e-3367.89Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE... [more]
BLAST of Chy8G146810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031740432.11.96e-4490.80uncharacterized protein LOC116403430 [Cucumis sativus][more]
XP_031739496.17.56e-4488.51uncharacterized protein LOC116403043 [Cucumis sativus][more]
XP_031738551.11.48e-4190.80LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus][more]
TYK16558.17.85e-4182.76girdin-like [Cucumis melo var. makuwa][more]
TYK21787.13.79e-4079.31girdin-like [Cucumis melo var. makuwa][more]
BLAST of Chy8G146810 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G146810.1Chy8G146810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding