Chy8G146460 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G146460
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Squalene monooxygenase
Location	chrH08: 1463249 .. 1464689 (+)
RNA-Seq Expression	Chy8G146460
Synteny	Chy8G146460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATCAATGCGCATTAGGATGGATCTTGGCCTCCGTTCTTAGAGTTTTGGCTTTATATTTATTGTTCGGCAAAAATAGCGGAGTTTCGAATGAACGGAGGTGTGAAAGCCTAAAGAATATAGTCACCACGAATGAAAAATGCAAATCGAGTAATCGCGACGACGACATTATCATTGTCGGAGCCGGTGTCATCGAATCCTCTCTTGCCTATACTCTCGCAAAGGTAATCCTATCCTTCTGTTCTCCAACGTTTTTCTCTAACTAAGCGCGCTCTCTTAGTTTCATGTTAAACGGCAGAGGATTTCTGAAAGTTTCACTTGAGAAATGTTAATGTGGAGAATCAGATTCGAGTGATTAAAAATTGTAGAAACTAAATTTCGTTATGACTTCCTTAGGTATTGTATGATTTATGTTCAACTGTCACTCAGTTTCTCTTTCTAGATGGCATTTTCGCGCTAGTTAGGTTGTTGTTCATGAAGGAAGTATCACATGGCGGTACGTTGTTAAGTCAGCATTTCTATTTTATACTCTGCTTTCGTGTATGAAATCACATGTTGAATGTACTTTTATTTGATTATTTTTTTCAAAACTCGAGCAGATTCTGATTTATGCACTGGAATTATGTAGAAATCTAATATAAATTTACTGTTCTGAAGACCAAATGTTTTCTATCGAAAGATATCTTGTTATTTTAGTTATGATTTAGAGTTTATACTCCCCGGATAAGCATTTCAGAATTATTAAGAATGTTATTTCTTAGAGGAGTTATCTTTTAATAGTGTTGTATTTTTCACAGTTGAATATAGGTGGAATTTGAATGATTTTTTCGTAAAGTTTGAGCATTCTTGTGTTTAATGTGCATATTTTAGTTTGGTTAATTAGATTATTGAGAATTTGAAATCTTGAAGTAAGAATAAATTATTCTTTAGTCTTGATATTTAATTGATTTTTTCAAGTTAAAATATGTTTATTTTTCTTCTCCGTGTAGGTAATCAATTTGTTAATAGGGTTATTCTTATTATGAGTTTACCTAAACTAAGAGAAACCGTGGGAGACTCTATATGAAAAGAAGCTAAAAGGTGCTGAAGTTTCATTCTAATTTTTTCCTCTTTTCTTCCTGTTCTTGAGTATCTTGCTACTTAGATTGTTTAGAAACCTAAAATAAACGGGATATTTAGATGTTAAATACATTCTCAAAACTTTTTTTTTCCTTTGTTGTAGGAACCTTCATGCATTGATATAGAGATGTTATGTATCGACAGTCTTTTTTGTAGAGATTACTTTGTTAGTTGAGCATATTTTCTTTTTCATAATGCTATTACTCTTGGTGATGTTCATATTGTCCTCTTCTCTTCTCTTAGATGTTGATTTTTTTGGTACTTCATATTACCAAATTGGAGATGCATTTGTATGTGAAAAGACAGGACTTGTTCATG

mRNA sequence

ATGGTGGATCAATGCGCATTAGGATGGATCTTGGCCTCCGTTCTTAGAGTTTTGGCTTTATATTTATTGTTCGGCAAAAATAGCGGAGTTTCGAATGAACGGAGGTGTGAAAGCCTAAAGAATATAGTCACCACGAATGAAAAATGCAAATCGAGTAATCGCGACGACGACATTATCATTGTCGGAGCCGGTGTCATCGAATCCTCTCTTGCCTATACTCTCGCAAAGATGTTGATTTTTTTGGTACTTCATATTACCAAATTGGAGATGCATTTGTATGTGAAAAGACAGGACTTGTTCATG

Coding sequence (CDS)

ATGGTGGATCAATGCGCATTAGGATGGATCTTGGCCTCCGTTCTTAGAGTTTTGGCTTTATATTTATTGTTCGGCAAAAATAGCGGAGTTTCGAATGAACGGAGGTGTGAAAGCCTAAAGAATATAGTCACCACGAATGAAAAATGCAAATCGAGTAATCGCGACGACGACATTATCATTGTCGGAGCCGGTGTCATCGAATCCTCTCTTGCCTATACTCTCGCAAAGATGTTGATTTTTTTGGTACTTCATATTACCAAATTGGAGATGCATTTGTATGTGAAAAGACAGGACTTGTTCATG

Protein sequence

MVDQCALGWILASVLRVLALYLLFGKNSGVSNERRCESLKNIVTTNEKCKSSNRDDDIIIVGAGVIESSLAYTLAKMLIFLVLHITKLEMHLYVKRQDLFM

Homology

[Close]

BLAST of Chy8G146460 vs. ExPASy TrEMBL
Match: A0A0A0L0L0 (Squalene monooxygenase OS=Cucumis sativus OX=3659 GN=Csa_4G645290 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.6e-22
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MVDQCALGWILASVLRVLALYLLFG-KNSGVSNERRCESLKNIVTTNEKCKSSNRDDDII 60
          MVDQCALGWILASVL   ALYLLFG KN GVSNERR ESLKNI TTN +CKSSN D DII
Sbjct: 1  MVDQCALGWILASVLGASALYLLFGKKNCGVSNERRRESLKNIATTNGECKSSNSDGDII 60

Query: 61 IVGAGVIESSLAYTLAK 77
          IVGAGV  S+LAYTLAK
Sbjct: 61 IVGAGVAGSALAYTLAK 77

[Close]

BLAST of Chy8G146460 vs. ExPASy TrEMBL
Match: A0A5D3D983 (Squalene monooxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002380 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 62/77 (80.52%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MVDQCALGWILASVLRVLALYLLFG-KNSGVSNERRCESLKNIVTTNEKCKSSNRDDDII 60
          MVDQCALGWILASVL   ALYLLFG KN GV NERR ESLKNI TTN +CKSSN D DII
Sbjct: 1  MVDQCALGWILASVLGASALYLLFGKKNCGVLNERRRESLKNIATTNGECKSSNSDGDII 60

Query: 61 IVGAGVIESSLAYTLAK 77
          IVGAGV  S+LAYTLAK
Sbjct: 61 IVGAGVAGSALAYTLAK 77

[Close]

BLAST of Chy8G146460 vs. ExPASy TrEMBL
Match: A0A1S4DZE1 (Squalene monooxygenase OS=Cucumis melo OX=3656 GN=LOC103493632 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 62/77 (80.52%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MVDQCALGWILASVLRVLALYLLFG-KNSGVSNERRCESLKNIVTTNEKCKSSNRDDDII 60
          MVDQCALGWILASVL   ALYLLFG KN GV NERR ESLKNI TTN +CKSSN D DII
Sbjct: 1  MVDQCALGWILASVLGASALYLLFGKKNCGVLNERRRESLKNIATTNGECKSSNSDGDII 60

Query: 61 IVGAGVIESSLAYTLAK 77
          IVGAGV  S+LAYTLAK
Sbjct: 61 IVGAGVAGSALAYTLAK 77

[Close]

BLAST of Chy8G146460 vs. ExPASy TrEMBL
Match: A0A345Z0V0 (Squalene monooxygenase OS=Cucurbita pepo OX=3663 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.9e-21
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MVDQCALGWILASVLRVLALYLLF-GKNSGVSNERRCESLKNIVTTNEKCKSSNRDDDII 60
          MVDQCALGWILASVL V+ALYL F GKN GVSN RR ESLKNI T N +CKSSN D DII
Sbjct: 1  MVDQCALGWILASVLGVVALYLFFGGKNCGVSNGRRRESLKNIATINGECKSSNSDADII 60

Query: 61 IVGAGVIESSLAYTLAK 77
          IVGAGV  S+LAYTLAK
Sbjct: 61 IVGAGVAGSALAYTLAK 77

[Close]

BLAST of Chy8G146460 vs. ExPASy TrEMBL
Match: A0A6J1IWD9 (Squalene monooxygenase OS=Cucurbita maxima OX=3661 GN=LOC111481205 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 60/77 (77.92%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MVDQCALGWILASVLRVLALYLLF-GKNSGVSNERRCESLKNIVTTNEKCKSSNRDDDII 60
          MVDQCALGWILASVL V+ALYL F GKN GVSN R+ ESLKNI T N +CKSSN D DII
Sbjct: 1  MVDQCALGWILASVLGVVALYLFFGGKNCGVSNGRKRESLKNIATINGECKSSNSDADII 60

Query: 61 IVGAGVIESSLAYTLAK 77
          IVGAGV  S+LAYTLAK
Sbjct: 61 IVGAGVAGSALAYTLAK 77

[Close]

BLAST of Chy8G146460 vs. NCBI nr
Match: XP_004141303.1 (squalene monooxygenase SE1 [Cucumis sativus] >KGN55303.1 hypothetical protein Csa_012944 [Cucumis sativus])

HSP 1 Score: 113 bits (282), Expect = 9.86e-27
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MVDQCALGWILASVLRVLALYLLFGK-NSGVSNERRCESLKNIVTTNEKCKSSNRDDDII 60
          MVDQCALGWILASVL   ALYLLFGK N GVSNERR ESLKNI TTN +CKSSN D DII
Sbjct: 1  MVDQCALGWILASVLGASALYLLFGKKNCGVSNERRRESLKNIATTNGECKSSNSDGDII 60

Query: 61 IVGAGVIESSLAYTLAK 76
          IVGAGV  S+LAYTLAK
Sbjct: 61 IVGAGVAGSALAYTLAK 77

[Close]

BLAST of Chy8G146460 vs. NCBI nr
Match: XP_016901349.1 (PREDICTED: squalene monooxygenase-like [Cucumis melo] >KAA0064475.1 squalene monooxygenase-like [Cucumis melo var. makuwa] >TYK20113.1 squalene monooxygenase-like [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 6.77e-26
Identity = 62/77 (80.52%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MVDQCALGWILASVLRVLALYLLFGK-NSGVSNERRCESLKNIVTTNEKCKSSNRDDDII 60
          MVDQCALGWILASVL   ALYLLFGK N GV NERR ESLKNI TTN +CKSSN D DII
Sbjct: 1  MVDQCALGWILASVLGASALYLLFGKKNCGVLNERRRESLKNIATTNGECKSSNSDGDII 60

Query: 61 IVGAGVIESSLAYTLAK 76
          IVGAGV  S+LAYTLAK
Sbjct: 61 IVGAGVAGSALAYTLAK 77

[Close]

BLAST of Chy8G146460 vs. NCBI nr
Match: XP_023524156.1 (squalene monooxygenase-like [Cucurbita pepo subsp. pepo] >AXK50229.1 squalene epoxidase 3 [Cucurbita pepo])

HSP 1 Score: 108 bits (271), Expect = 3.32e-25
Identity = 61/77 (79.22%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MVDQCALGWILASVLRVLALYLLFG-KNSGVSNERRCESLKNIVTTNEKCKSSNRDDDII 60
          MVDQCALGWILASVL V+ALYL FG KN GVSN RR ESLKNI T N +CKSSN D DII
Sbjct: 1  MVDQCALGWILASVLGVVALYLFFGGKNCGVSNGRRRESLKNIATINGECKSSNSDADII 60

Query: 61 IVGAGVIESSLAYTLAK 76
          IVGAGV  S+LAYTLAK
Sbjct: 61 IVGAGVAGSALAYTLAK 77

[Close]

BLAST of Chy8G146460 vs. NCBI nr
Match: XP_022982347.1 (squalene monooxygenase-like [Cucurbita maxima])

HSP 1 Score: 107 bits (268), Expect = 8.64e-25
Identity = 60/77 (77.92%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1  MVDQCALGWILASVLRVLALYLLFG-KNSGVSNERRCESLKNIVTTNEKCKSSNRDDDII 60
          MVDQCALGWILASVL V+ALYL FG KN GVSN R+ ESLKNI T N +CKSSN D DII
Sbjct: 1  MVDQCALGWILASVLGVVALYLFFGGKNCGVSNGRKRESLKNIATINGECKSSNSDADII 60

Query: 61 IVGAGVIESSLAYTLAK 76
          IVGAGV  S+LAYTLAK
Sbjct: 61 IVGAGVAGSALAYTLAK 77

[Close]

BLAST of Chy8G146460 vs. NCBI nr
Match: XP_023536393.1 (squalene monooxygenase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107 bits (268), Expect = 8.68e-25
Identity = 59/77 (76.62%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MVDQCALGWILASVLRVLALYLLFGK-NSGVSNERRCESLKNIVTTNEKCKSSNRDDDII 60
          MVDQCALGWILASV+   ALY LFGK N G SNERR ESLKNI TTN +CK SN D DII
Sbjct: 1  MVDQCALGWILASVIGAAALYFLFGKKNCGASNERRRESLKNIATTNGECKPSNSDGDII 60

Query: 61 IVGAGVIESSLAYTLAK 76
          IVGAGV  S+LAYTLAK
Sbjct: 61 IVGAGVAGSALAYTLAK 77

The following BLAST results are available for this feature:

BLAST of Chy8G146460 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G146460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0L0	3.6e-22	81.82	Squalene monooxygenase OS=Cucumis sativus OX=3659 GN=Csa_4G645290 PE=3 SV=1	[more]
A0A5D3D983	1.8e-21	80.52	Squalene monooxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S4DZE1	1.8e-21	80.52	Squalene monooxygenase OS=Cucumis melo OX=3656 GN=LOC103493632 PE=3 SV=1	[more]
A0A345Z0V0	6.9e-21	79.22	Squalene monooxygenase OS=Cucurbita pepo OX=3663 PE=2 SV=1	[more]
A0A6J1IWD9	1.5e-20	77.92	Squalene monooxygenase OS=Cucurbita maxima OX=3661 GN=LOC111481205 PE=3 SV=1	[more]

BLAST of Chy8G146460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141303.1	9.86e-27	81.82	squalene monooxygenase SE1 [Cucumis sativus] >KGN55303.1 hypothetical protein Cs...	[more]
XP_016901349.1	6.77e-26	80.52	PREDICTED: squalene monooxygenase-like [Cucumis melo] >KAA0064475.1 squalene mon...	[more]
XP_023524156.1	3.32e-25	79.22	squalene monooxygenase-like [Cucurbita pepo subsp. pepo] >AXK50229.1 squalene ep...	[more]
XP_022982347.1	8.64e-25	77.92	squalene monooxygenase-like [Cucurbita maxima]	[more]
XP_023536393.1	8.68e-25	76.62	squalene monooxygenase-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy8G146460 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G146460.1	Chy8G146460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016126	sterol biosynthetic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0004506	squalene monooxygenase activity