Chy8G146440 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G146440
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH08: 1425615 .. 1426787 (-)
RNA-Seq Expression	Chy8G146440
Synteny	Chy8G146440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAGGCAGCAGATGCACCTAGCAACGTCCCGACGACGGGCAAAGTAGCGGAAGCAGCGCTAGATGGGCCGGGTGCTGGGGATGCTGCTTCATCAGAGGCCAAAACCATGCTCAGGGAGGCGGCAACAGTGATGAAGGCGGCGCAGGCAAAGTTCTTCATTCCCATGATGAAAGTATGAGGGGAGAAAGAGTTTAGAGAAAGACCTGCTTGAAAACGAGAGGGAAAGTTCCCTTTTTTAGTTATTTTATTTTATTTTATTTTTTTGGTTTTTTTGGGGGTTTTTTTTTATTCTTTTATTCTTTTGTTGGTAAGTAGTAATGAAATGCAGGTCTCAAGAAAAAGAGGAGGGTGAGAAGAGATTTATAGGGTGGATTTTGGTCTATTTTTGGGTGTAAACAGCATTTTGAGAACGATAATGGGGATTTTGTTAGTCATAAACTAAATGAGTGGTTGGGCGTAGTGTGAGGATTGTTACTTTGAATTTAACTATATTTAATTTTGTTGGAAAATTTGTGGTATACTAATTTTAAATTTGTGTTTTTATTTTTATTTTTTTGTCATTGTTTTTTTTAGAAAAAGGATTAACAAATGGTTAAGAATAAGCATCCTCCTTTCTCTTCCATTAACAAAAAAAAAAAAAAAAAAAATCCACACCTTTCTTCCATTGCATGTTCTTAAAAAAATTAACTAACTATTTATACTCCATAGAGCAAAACTATAATTTATTACTTTTGATTTTGAAGTATAAATATTTTAACAAAGGTTCTATTTCTGTTTTGGTTATGAAATTTAGTAAAGTTAAAAAATAAGGGATGCATTTTACTTTTTATGTATTATTGATATATGTCTATCTCAATTTAGTGCTTTATGTCTTCTATAAAAAGTATTTTTTTTAATATTTATAATATTTTTCAATAATTTTGATAATTTAAAAGGTTTCCTTGAAAATAAAATAACCCTTGAACACTTGATTTCTTAAAGCCTCAACATTTTAGAAGATGATTTATTATTTTTCATAGAAATTAGATAGGAGCGGATACAGTCTACTCTTCCTGGTGTGAATATTCTGACTATGGTTTTGTGTCGGCTTTTTCAAGCGGTTGTCCTCAATCAAGTAATTAATGGAGGTGTTTTAGGAGATACTTGTGTGAAATCTGACTTGAAATAG

mRNA sequence

ATGAGAGAGGCAGCAGATGCACCTAGCAACGTCCCGACGACGGGCAAAGTAGCGGAAGCAGCGCTAGATGGGCCGGGTGCTGGGGATGCTGCTTCATCAGAGGCCAAAACCATGCTCAGGGAGGCGGCAACAGTGATGAAGGCGGCGCAGGCAAAGTTCTTCATTCCCATGATGAAAGAGCGGATACAGTCTACTCTTCCTGGTGTGAATATTCTGACTATGGTTTTGTGTCGGCTTTTTCAAGCGGTTGTCCTCAATCAAGTAATTAATGGAGGTGTTTTAGGAGATACTTGTGTGAAATCTGACTTGAAATAG

Coding sequence (CDS)

ATGAGAGAGGCAGCAGATGCACCTAGCAACGTCCCGACGACGGGCAAAGTAGCGGAAGCAGCGCTAGATGGGCCGGGTGCTGGGGATGCTGCTTCATCAGAGGCCAAAACCATGCTCAGGGAGGCGGCAACAGTGATGAAGGCGGCGCAGGCAAAGTTCTTCATTCCCATGATGAAAGAGCGGATACAGTCTACTCTTCCTGGTGTGAATATTCTGACTATGGTTTTGTGTCGGCTTTTTCAAGCGGTTGTCCTCAATCAAGTAATTAATGGAGGTGTTTTAGGAGATACTTGTGTGAAATCTGACTTGAAATAG

Protein sequence

MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFIPMMKERIQSTLPGVNILTMVLCRLFQAVVLNQVINGGVLGDTCVKSDLK*

Homology

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BLAST of Chy8G146440 vs. ExPASy TrEMBL
Match: A0A0A0L2P9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572270 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFIPMMK 60
          MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFI MMK
Sbjct: 1  MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFISMMK 59

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BLAST of Chy8G146440 vs. NCBI nr
Match: KAG6595645.1 (Serine/threonine-protein kinase Nek6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 3.58e-14
Identity = 47/58 (81.03%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1   MREAADAPSNVPTTGKVAEAALDGPGAGD-AASSEAKTMLREAATVMKAAQAKFFIPM 57
           MREAADAPSNVPTTGKVAEAALDGPGAGD AAS  AKTM REAAT  K A A  FI M
Sbjct: 672 MREAADAPSNVPTTGKVAEAALDGPGAGDVAASLVAKTMFREAATATKVATANVFISM 729

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BLAST of Chy8G146440 vs. NCBI nr
Match: KYP59486.1 (hypothetical protein KK1_014921, partial [Cajanus cajan])

HSP 1 Score: 46.6 bits (109), Expect = 2.72e-04
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 2  REAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFIPMM 58
          +E  +APS  PT GKVAEA L GPGAG   S  A T L E AT M+  Q  FF+ MM
Sbjct: 1  KETTEAPSKEPTRGKVAEAPLLGPGAGVGTSVAATTTLMEVAT-MRIMQVTFFMSMM 56

[Close]

BLAST of Chy8G146440 vs. NCBI nr
Match: KAF2319422.1 (hypothetical protein GH714_015720 [Hevea brasiliensis])

HSP 1 Score: 48.9 bits (115), Expect = 6.35e-04
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1  MREAADAPSNVPTTGKVAEAALDGPGAGDAASSEAKTMLREAATVMKAAQAKFFI 55
          M +A +AP+N PTTGK+A AAL G GAG+AASS A T L EAA V + AQA FFI
Sbjct: 1  MNDAREAPTNDPTTGKLAVAALVGSGAGEAASS-AITALMEAA-VKRIAQAIFFI 53

The following BLAST results are available for this feature:

BLAST of Chy8G146440 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G146440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2P9	1.0e-19	98.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572270 PE=4 SV=1	[more]

BLAST of Chy8G146440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595645.1	3.58e-14	81.03	Serine/threonine-protein kinase Nek6, partial [Cucurbita argyrosperma subsp. sor...	[more]
KYP59486.1	2.72e-04	54.39	hypothetical protein KK1_014921, partial [Cajanus cajan]	[more]
KAF2319422.1	6.35e-04	63.64	hypothetical protein GH714_015720 [Hevea brasiliensis]	[more]

BLAST of Chy8G146440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G146440.1	Chy8G146440.1	mRNA