Chy8G146390 (gene) Cucumber (hystrix) v1

Overview
NameChy8G146390
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionNBS-LRR type resistance protein
LocationchrH08: 1163794 .. 1164389 (-)
RNA-Seq ExpressionChy8G146390
SyntenyChy8G146390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCGCTTTTTCGTGCTTGATTTTAACGATCAAGCACTTACTAGATTTGTTGAGCATCAAATGCTCACATCTTTTAAAGAGTTCAGGGGCGACTGTCACAGGCATTTCAAACGGTACAACGATCTAGAACAGACACGTGCCAACCCACCTAACATATTGGTAGGACGTAGGGAAGATTGGCAGTTCCTGTGCGATCACTACATGAGCCGTGCATGTCAGGTGAGATCTACGAATTGTAATGATATGTGTTATTTCACTTAATATTCTTAACGCACGTTTGTACTTTTAACAAACATTTTCATGCAGGAGCAATCACGGACGAACAAGGCTGCTAGGCAGAAGCAGCCTTACAGTCATAGTAGTGGGTCGAAGTCGTTTCTACAACGACAACCTGACCTCGCTGAAGAACGAGGTCTACCAGTCGACCGACTGGAATTATTCAAAGAAACCCACGCATGTTAGTTTAAACTTGATTTTGTCTAAATTATGTCCTTATACTTCTCCAATTCATAACTTACATAAAATTTTATTTGTTGTAGAGTAAAATGCTGGAACTTCAATCTCAGCCTACCCCAGAGGGTTCTCAGCCACTCTCTG

mRNA sequence

AGCGCTTTTTCGTGCTTGATTTTAACGATCAAGCACTTACTAGATTTGTTGAGCATCAAATGCTCACATCTTTTAAAGAGTTCAGGGGCGACTGTCACAGGCATTTCAAACGGTACAACGATCTAGAACAGACACGTGCCAACCCACCTAACATATTGGAGCAATCACGGACGAACAAGGCTGCTAGGCAGAAGCAGCCTTACAGTCATAGTAGTGGGTCGAAGTCGTTTCTACAACGACAACCTGACCTCGCTGAAGAACGAGGTCTACCAGTCGACCGACTGGAATTATTCAAAGAAACCCACGCATGTTAAGTAAAATGCTGGAACTTCAATCTCAGCCTACCCCAGAGGGTTCTCAGCCACTCTCTG

Coding sequence (CDS)

AGCGCTTTTTCGTGCTTGATTTTAACGATCAAGCACTTACTAGATTTGTTGAGCATCAAATGCTCACATCTTTTAAAGAGTTCAGGGGCGACTGTCACAGGCATTTCAAACGGTACAACGATCTAGAACAGACACGTGCCAACCCACCTAACATATTGGAGCAATCACGGACGAACAAGGCTGCTAGGCAGAAGCAGCCTTACAGTCATAGTAGTGGGTCGAAGTCGTTTCTACAACGACAACCTGACCTCGCTGAAGAACGAGGTCTACCAGTCGACCGACTGGAATTATTCAAAGAAACCCACGCATGTTAAGTAAAATGCTGGAACTTCAATCTCAGCCTACCCCAGAGGGTTCTCAGCCACTCTCTG

Protein sequence

SAFSCLILTIKHLLDLLSIKCSHLLKSSGATVTGISNGTTI*NRHVPTHLTYWSNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSLKNEVYQSTDWNYSKKPTHVK*NAGTSISAYPRGFSATLX
Homology
BLAST of Chy8G146390 vs. ExPASy TrEMBL
Match: A0A5A7T1N6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002030 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.1e-15
Identity = 55/109 (50.46%), Postives = 63/109 (57.80%), Query Frame = 0

Query: 14  LDLLSIKCSHLLKSSGATVTGISNGTTI*NRHVPTHLTYW-------------------- 73
           + LLSI+CS  LKSSG TV  IS       R VPTH T+W                    
Sbjct: 78  IGLLSIRCSRPLKSSGLTVIDISKSIATRRRLVPTHQTHWLDVMRIGTSSTTIISAVHSR 137

Query: 74  SNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSLKNEVYQSTDWNYSKKPT 103
           SNHGRTRLL RSSLT+IV G SRFYND+++SLK E  +S  WN S K T
Sbjct: 138 SNHGRTRLLDRSSLTIIVEGPSRFYNDSMSSLKEEGSRSIVWNCSGKHT 186

BLAST of Chy8G146390 vs. ExPASy TrEMBL
Match: A0A5D3DIR3 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003130 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.2e-12
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 45  HVPTHLTYWSNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSLKNEVYQSTDWNYSKKPT 103
           H+PTH TYW NHG TRLL RS+LT+I  GRSRFYNDN +SL  EV +S  W+ S K T
Sbjct: 107 HMPTHHTYWRNHGPTRLLNRSNLTIIATGRSRFYNDNTSSLSKEVSRSILWSCSSKHT 164

BLAST of Chy8G146390 vs. ExPASy TrEMBL
Match: A0A5A7SJB0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00210 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 26  KSSGATVTGISNGTTI*NRHVPTHLTYWSNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSL 85
           K   AT++G S  T    R VPTH TYW NHGRTRLL RSSLT+I   ++ FYND+++SL
Sbjct: 188 KEFQATISGTSKSTATSRRLVPTHHTYWRNHGRTRLLDRSSLTIIAAAQN-FYNDSMSSL 247

Query: 86  KNEVYQSTDWNYSKK 101
             E    T W+ S K
Sbjct: 248 SKEGNWWTVWSCSNK 261

BLAST of Chy8G146390 vs. ExPASy TrEMBL
Match: A0A5D3DTP7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2133G00270 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.7e-09
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 46  VPTHLTYWSNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSLKNEVYQST 94
           VPTH TYWSNHGRTRLL RSSL +I   +SRFYND+ +SL  E  QST
Sbjct: 190 VPTHHTYWSNHGRTRLLDRSSLIIIAASQSRFYNDSTSSLSKEGSQST 237

BLAST of Chy8G146390 vs. ExPASy TrEMBL
Match: A0A5A7VKG1 (Flocculation protein FLO1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00670 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 53   WSNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSLKNEVYQSTDWNYSKKPT 103
            W NHGRTRLL +S+L +IV G SR YN+N +SL+NE+ QST W+YS+K T
Sbjct: 1206 WKNHGRTRLLDKSNLIIIVAGPSRCYNNNTSSLRNEISQSTLWSYSEKHT 1255

BLAST of Chy8G146390 vs. NCBI nr
Match: KAA0036833.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYJ95900.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.11e-19
Identity = 55/109 (50.46%), Postives = 63/109 (57.80%), Query Frame = 0

Query: 14  LDLLSIKCSHLLKSSGATVTGISNGTTI*NRHVPTHLTYW-------------------- 73
           + LLSI+CS  LKSSG TV  IS       R VPTH T+W                    
Sbjct: 78  IGLLSIRCSRPLKSSGLTVIDISKSIATRRRLVPTHQTHWLDVMRIGTSSTTIISAVHSR 137

Query: 74  SNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSLKNEVYQSTDWNYSKKPT 102
           SNHGRTRLL RSSLT+IV G SRFYND+++SLK E  +S  WN S K T
Sbjct: 138 SNHGRTRLLDRSSLTIIVEGPSRFYNDSMSSLKEEGSRSIVWNCSGKHT 186

BLAST of Chy8G146390 vs. NCBI nr
Match: TYK23260.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.47e-15
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 45  HVPTHLTYWSNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSLKNEVYQSTDWNYSKKPT 102
           H+PTH TYW NHG TRLL RS+LT+I  GRSRFYNDN +SL  EV +S  W+ S K T
Sbjct: 107 HMPTHHTYWRNHGPTRLLNRSNLTIIATGRSRFYNDNTSSLSKEVSRSILWSCSSKHT 164

BLAST of Chy8G146390 vs. NCBI nr
Match: KAA0026290.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21486.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.19e-12
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 26  KSSGATVTGISNGTTI*NRHVPTHLTYWSNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSL 85
           K   AT++G S  T    R VPTH TYW NHGRTRLL RSSLT+I   ++ FYND+++SL
Sbjct: 188 KEFQATISGTSKSTATSRRLVPTHHTYWRNHGRTRLLDRSSLTIIAAAQN-FYNDSMSSL 247

Query: 86  KNEVYQSTDWNYSKK 100
             E    T W+ S K
Sbjct: 248 SKEGNWWTVWSCSNK 261

BLAST of Chy8G146390 vs. NCBI nr
Match: KAA0058377.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK26884.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.57e-11
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 46  VPTHLTYWSNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSLKNEVYQST 93
           VPTH TYWSNHGRTRLL RSSL +I   +SRFYND+ +SL  E  QST
Sbjct: 190 VPTHHTYWSNHGRTRLLDRSSLIIIAASQSRFYNDSTSSLSKEGSQST 237

BLAST of Chy8G146390 vs. NCBI nr
Match: TYJ96308.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 6.90e-11
Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 31  TVTGISNGTTI*NRHVPTHLTYWSNHGRTRLLGRSSLTVIVVGRSRFYNDNLTSLKNEV 89
           T  GIS  +   N+HVPT+ T WSN G  RLL R SLT  V G SR YNDN+TSL N V
Sbjct: 93  TTIGISRSSRTLNKHVPTYHTDWSNQGPIRLLERDSLTTTVAGPSRSYNDNMTSLNNVV 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T1N64.1e-1550.46NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DIR37.2e-1263.79NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7SJB05.1e-1052.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DTP75.7e-0968.75CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7VKG11.7e-0862.00Flocculation protein FLO1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
Match NameE-valueIdentityDescription
KAA0036833.16.11e-1950.46NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYJ95900.1 NBS-LRR t... [more]
TYK23260.11.47e-1563.79NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0026290.11.19e-1252.00CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21486.1 CACTA en-... [more]
KAA0058377.12.57e-1168.75CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK26884.1 CACTA en-... [more]
TYJ96308.16.90e-1157.63(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G146390.1Chy8G146390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane