Chy8G146380 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G146380
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	CACTA en-spm transposon protein
Location	chrH08: 1163778 .. 1164348 (-)
RNA-Seq Expression	Chy8G146380
Synteny	Chy8G146380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATTTGTTGAGCATCAAATGCTCACATCTTTTAAAGAGTTCAGGGGCGACTGTCACAGGCATTTCAAACGGTACAACGATCTAGAACAGACACGTGCCAACCCACCTAACATATTGGTAGGACGTAGGGAAGATTGGCAGTTCCTGTGCGATCACTACATGAGCCGTGCATGTCAGGTGAGATCTACGAATTGTAATGATATGTGTTATTTCACTTAATATTCTTAACGCACGTTTGTACTTTTAACAAACATTTTCATGCAGGAGCAATCACGGACGAACAAGGCTGCTAGGCAGAAGCAGCCTTACAGTCATAGTAGTGGGTCGAAGTCGTTTCTACAACGACAACCTGACCTCGCTGAAGAACGAGGTCTACCAGTCGACCGACTGGAATTATTCAAAGAAACCCACGCATGTTAGTTTAAACTTGATTTTGTCTAAATTATGTCCTTATACTTCTCCAATTCATAACTTACATAAAATTTTATTTGTTGTAGAGTAAAATGCTGGAACTTCAATCTCAGCCTACCCCAGAGGGTTCTCAGCCACTCTCTGACGATGATATTTGCGA

mRNA sequence

AGATTTGTTGAGCATCAAATGCTCACATCTTTTAAAGAGTTCAGGGGCGACTGTCACAGGCATTTCAAACGGTACAACGATCTAGAACAGACACGTGCCAACCCACCTAACATATTGGAGCAATCACGGACGAACAAGGCTGCTAGGCAGAAGCAGCCTTACAGTCATAGTAGTGGGTCGAAGTCGTTTCTACAACGACAACCTGACCTCGCTGAAGAACGAGGTCTACCAGTCGACCGACTGGAATTATTCAAAGAAACCCACGCATAGTAAAATGCTGGAACTTCAATCTCAGCCTACCCCAGAGGGTTCTCAGCCACTCTCTGACGATGATATTTGCGA

Coding sequence (CDS)

AGATTTGTTGAGCATCAAATGCTCACATCTTTTAAAGAGTTCAGGGGCGACTGTCACAGGCATTTCAAACGGTACAACGATCTAGAACAGACACGTGCCAACCCACCTAACATATTGGAGCAATCACGGACGAACAAGGCTGCTAGGCAGAAGCAGCCTTACAGTCATAGTAGTGGGTCGAAGTCGTTTCTACAACGACAACCTGACCTCGCTGAAGAACGAGGTCTACCAGTCGACCGACTGGAATTATTCAAAGAAACCCACGCATAGTAAAATGCTGGAACTTCAATCTCAGCCTACCCCAGAGGGTTCTCAGCCACTCTCTGACGATGATATTTGCGA

Protein sequence

RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGSKSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSISAYPRGFSATL*R*YLR

Homology

[Close]

BLAST of Chy8G146380 vs. ExPASy TrEMBL
Match: A0A5A7T2L6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001270 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.2e-35
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1   RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGS 60
           RFVEHQMLT+FKEFR DC+RHFK+Y+D E+TRANPPN LEQSRTNKAARQKQPY+HSSGS
Sbjct: 130 RFVEHQMLTTFKEFRADCYRHFKKYSDPEETRANPPNALEQSRTNKAARQKQPYNHSSGS 189

Query: 61  KSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSIS 99
           KSFLQRQ +LAE RG P+DR+ELF+ETH    AGT +S
Sbjct: 190 KSFLQRQYELAERRGQPIDRVELFRETHV--RAGTFVS 225

[Close]

BLAST of Chy8G146380 vs. ExPASy TrEMBL
Match: A0A5D3CQY3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00370 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.5e-35
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1   RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGS 60
           RFVEHQMLT+FKEFR DCHRHFK+Y+D E+ RANPPN LEQSRTNKAARQKQPY+HSSGS
Sbjct: 123 RFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALEQSRTNKAARQKQPYNHSSGS 182

Query: 61  KSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSIS 99
           KSFLQRQ +LAE +G PVDR+ELF+ETH    AGT +S
Sbjct: 183 KSFLQRQYELAERKGQPVDRVELFRETHV--RAGTFVS 218

[Close]

BLAST of Chy8G146380 vs. ExPASy TrEMBL
Match: A0A5D3C2U8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00580 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.4e-35
Identity = 78/102 (76.47%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGS 60
           RFVEHQMLT+FKEFR DCHRHFK+Y+D E+ RANPPN LEQSRTNKAARQKQPY+HSSGS
Sbjct: 116 RFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALEQSRTNKAARQKQPYNHSSGS 175

Query: 61  KSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSISAYPR 103
           KSFLQRQ +LAE RG PVDR+ELF ETH    AG S    PR
Sbjct: 176 KSFLQRQYELAERRGQPVDRVELFWETHV--RAGHSCHRPPR 215

[Close]

BLAST of Chy8G146380 vs. ExPASy TrEMBL
Match: A0A5A7U1J7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00820 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.4e-35
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1   RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGS 60
           RFVEHQMLT+FKEFR DCH+HFK+Y+D E+ RANPPN LEQSRTNKAARQKQPY+HSSGS
Sbjct: 115 RFVEHQMLTTFKEFRTDCHKHFKKYSDPEEVRANPPNALEQSRTNKAARQKQPYNHSSGS 174

Query: 61  KSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSIS 99
           KSFLQRQ +LAE RG PVDR+ELF+ETH    AGT +S
Sbjct: 175 KSFLQRQYELAERRGQPVDRVELFRETHV--RAGTFVS 210

[Close]

BLAST of Chy8G146380 vs. ExPASy TrEMBL
Match: A0A5A7TG53 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G007110 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.1e-34
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1   RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGS 60
           RFVEHQMLT+FKEF+ DCHRHFK+Y+D E+ RANPPN LEQSRTNKAARQKQPY+HSSGS
Sbjct: 109 RFVEHQMLTTFKEFQADCHRHFKKYSDPEEARANPPNALEQSRTNKAARQKQPYNHSSGS 168

Query: 61  KSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSIS 99
           KSFLQRQ +LAE +G PVDR+ELF+ETH    AGT +S
Sbjct: 169 KSFLQRQYELAERKGEPVDRVELFRETHV--RAGTFVS 204

[Close]

BLAST of Chy8G146380 vs. NCBI nr
Match: KAA0037213.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 7.14e-44
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1   RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGS 60
           RFVEHQMLT+FKEFR DC+RHFK+Y+D E+TRANPPN LEQSRTNKAARQKQPY+HSSGS
Sbjct: 130 RFVEHQMLTTFKEFRADCYRHFKKYSDPEETRANPPNALEQSRTNKAARQKQPYNHSSGS 189

Query: 61  KSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSIS 98
           KSFLQRQ +LAE RG P+DR+ELF+ETH    AGT +S
Sbjct: 190 KSFLQRQYELAERRGQPIDRVELFRETHV--RAGTFVS 225

[Close]

BLAST of Chy8G146380 vs. NCBI nr
Match: KAA0025427.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK04756.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (388), Expect = 1.49e-43
Identity = 78/102 (76.47%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGS 60
           RFVEHQMLT+FKEFR DCHRHFK+Y+D E+ RANPPN LEQSRTNKAARQKQPY+HSSGS
Sbjct: 116 RFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALEQSRTNKAARQKQPYNHSSGS 175

Query: 61  KSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSISAYPR 102
           KSFLQRQ +LAE RG PVDR+ELF ETH    AG S    PR
Sbjct: 176 KSFLQRQYELAERRGQPVDRVELFWETHV--RAGHSCHRPPR 215

[Close]

BLAST of Chy8G146380 vs. NCBI nr
Match: KAA0049733.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (389), Expect = 2.61e-43
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1   RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGS 60
           RFVEHQMLT+FKEFR DCH+HFK+Y+D E+ RANPPN LEQSRTNKAARQKQPY+HSSGS
Sbjct: 115 RFVEHQMLTTFKEFRTDCHKHFKKYSDPEEVRANPPNALEQSRTNKAARQKQPYNHSSGS 174

Query: 61  KSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSIS 98
           KSFLQRQ +LAE RG PVDR+ELF+ETH    AGT +S
Sbjct: 175 KSFLQRQYELAERRGQPVDRVELFRETHV--RAGTFVS 210

[Close]

BLAST of Chy8G146380 vs. NCBI nr
Match: KAA0051663.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (382), Expect = 2.62e-43
Identity = 74/98 (75.51%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1   RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGS 60
           +F+EHQMLT+FKEFR DCHRHFK+Y+D E+ RANPPN LEQSRTNKAARQKQPY+HSSGS
Sbjct: 30  QFIEHQMLTTFKEFRTDCHRHFKKYSDPEEARANPPNTLEQSRTNKAARQKQPYNHSSGS 89

Query: 61  KSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSIS 98
           KSFLQRQ +LAE RG PVDR++LF+ETH    AGT +S
Sbjct: 90  KSFLQRQYELAERRGQPVDRVKLFQETHV--RAGTFVS 125

[Close]

BLAST of Chy8G146380 vs. NCBI nr
Match: KAA0042203.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 6.37e-43
Identity = 75/98 (76.53%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1   RFVEHQMLTSFKEFRGDCHRHFKRYNDLEQTRANPPNILEQSRTNKAARQKQPYSHSSGS 60
           RFVEHQMLT+FKEF+ DCHRHFK+Y+D E+ RANPPN LEQSRTNKAARQKQPY+HSSGS
Sbjct: 109 RFVEHQMLTTFKEFQADCHRHFKKYSDPEEARANPPNALEQSRTNKAARQKQPYNHSSGS 168

Query: 61  KSFLQRQPDLAEERGLPVDRLELFKETHA**NAGTSIS 98
           KSFLQRQ +LAE +G PVDR+ELF+ETH    AGT +S
Sbjct: 169 KSFLQRQYELAERKGEPVDRVELFRETHV--RAGTFVS 204

The following BLAST results are available for this feature:

BLAST of Chy8G146380 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G146380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T2L6	4.2e-35	77.55	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CQY3	5.5e-35	77.55	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3C2U8	9.4e-35	76.47	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7U1J7	9.4e-35	77.55	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TG53	2.1e-34	76.53	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Chy8G146380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037213.1	7.14e-44	77.55	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0025427.1	1.49e-43	76.47	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK04756.1 CACTA en-...	[more]
KAA0049733.1	2.61e-43	77.55	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0051663.1	2.62e-43	75.51	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0042203.1	6.37e-43	76.53	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Chy8G146380 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 38..90 e-value: 3.5E-12 score: 46.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G146380.1	Chy8G146380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane